BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941400
Length=1757
Score E
Sequences producing significant alignments: (Bits) Value
AT5G18720.1 | Symbols: | Domain of unknown function (DUF3444) ... 1546 0.0
AT5G18740.1 | Symbols: | Domain of unknown function (DUF3444) ... 1437 0.0
AT5G18730.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Molecular... 1395 0.0
AT5G18710.1 | Symbols: | Domain of unknown function (DUF3444) ... 152 1e-35
> AT5G18720.1 | Symbols: | Domain of unknown function (DUF3444)
| chr5:6244005-6246227 FORWARD LENGTH=1838
Length=1838
Score = 1546 bits (837), Expect = 0.0
Identities = 1225/1409 (87%), Gaps = 39/1409 (3%)
Strand=Plus/Plus
Query 64 CTTGTGCTGTGTGTGTTGGCGAGAAGAGAAAGAGGAACCAGTATGGTGATAGTTGCAATG 123
||||||||| | ||||||| ||||||||||||||||| |||||| ||||||||||| ||
Sbjct 143 CTTGTGCTGAGAGTGTTGGTAAGAAGAGAAAGAGGAACGAGTATGATGATAGTTGCATTG 202
Query 124 ATAGAAATCA-CGGTCCTGTAAGTAACAATAGAAGAGGATCTAATGATAATGGAGATACA 182
|||| || | |||| |||||||||||||||||||||| |||| ||| ||||||||| ||
Sbjct 203 CTAGATAT-ATCGGTGCTGTAAGTAACAATAGAAGAGGGTCTAGTGACAATGGAGATGCA 261
Query 183 -GAAAGGGGAGAAGAGTCGGTACAAATACAACCAAAGATTTCTGAA--T-CTGTTGGTCC 238
| | ||||||||||||| | |||| |||| ||||||||| | |||||||||
Sbjct 262 TG-CATAGGAGAAGAGTCGG--C----ACAAGCAAACATTTCTGAATGTGTTGTTGGTCC 314
Query 239 AAAGTTTAACGACTTTGGTAAGCTGAGGGAAGAAGTAAACTTTGCGGTTGGTCAGACCTG 298
|||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||
Sbjct 315 AAAGTTTAACGACTTTAGTAAGCTGAGGGAAGAAGCAAACTTTAAAGTTGGTCAGACCTG 374
Query 299 GGCTCTTTATGATACAA---CTGGGATGCCTAGATTGTATGCTCAGATCAGGAAAGTTTC 355
||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 375 GGCGCTTTATGATACAATGGATGGGATGCCTAGATTGTATGCTCAGATCAGGAAAGTTTC 434
Query 356 AGCTCCTTGTTTTGGTCTTAGGATTACATATCTAGAGCCAGATCCAAATGGTGAGAAAGA 415
|||||||||||||||||||| |||||||||||||||||||||| |||||| |||||||||
Sbjct 435 AGCTCCTTGTTTTGGTCTTATGATTACATATCTAGAGCCAGATTCAAATGATGAGAAAGA 494
Query 416 GCTCCAATGGTTTGAAGAAGACTTGCCTGTTTCTGTTGGTATGTTCAGGCTTGGGGAAAA 475
|||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct 495 GCTCCAATGGTTTGAAAAAGACTTGCCTGTTTCTGTTGGTAACTTCAGGCTTGGGGAAAA 554
Query 476 TAAGAGCACACAAGATCGGTCAATATTTTCACATGTTATTCATTGCAGTGAACGAAGCAA 535
|||||||||| ||||||| |||||||||||||||||||||||||||| |||||| |||||
Sbjct 555 TAAGAGCACAAAAGATCGTTCAATATTTTCACATGTTATTCATTGCAATGAACGGAGCAA 614
Query 536 CACTCTTTGTTTCAGCGTCACTTGTCGTTTCATCAACACTTGTCATTTTAGTGTATCCCC 595
| || |||||||||| |||||||||||||||||| |||| ||||||||||||||||||
Sbjct 615 CGCTAGTTGTTTCAGCATCACTTGTCGTTTCATCAGTACTTATCATTTTAGTGTATCCCC 674
Query 596 TAGAAAAG-ACGAGACTTGGGCGCTTTTCAAGAACTGGGATATTAAGTGGTCTTCAGAGC 654
|||||| | | ||||||||||||||||||||||||||||||||||||||||||| | | |
Sbjct 675 TAGAAATGGA-GAGACTTGGGCGCTTTTCAAGAACTGGGATATTAAGTGGTCTTTAAAAC 733
Query 655 CAGATTCTCACCGCAAATTTGAGTATGAATTTGTCGAGATTCTGTCAGATTACGCGGATG 714
|||||||||||||||||| |||||||||||||||| ||||||||||||||||||| ||||
Sbjct 734 CAGATTCTCACCGCAAATATGAGTATGAATTTGTCAAGATTCTGTCAGATTACGCTGATG 793
Query 715 AAGCTGGTGTATATGTTGCATACTTGCATAAAGCAAAAGGATTTGCTAGTGTGTTCTTCC 774
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 794 AAACTGGTGTATATGTTGCATACTTGCATAAAGCAAAAGGATTTGCTAGTGTGTTCTTTC 853
Query 775 GAATGGGAACTGGTTATGAAGGTATATTTCGTATTTTACCTCACAGTTTGTATCGGTTCT 834
||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 854 GAATGGGAAGAGGTTATGAAGGTATATTTCGTATTTTACCTCAGAGTTTGTATCGGTTCT 913
Query 835 CCCATAGGGTTCCTTCCTTCAAACTGACTGGAATTGAAGGAAAAGGTGTGCCAAAAGATG 894
|||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 914 CCCATAGGATTCCTTCCTT-----TGACTGGAATTGAAGGAAAAGGTGTGCCAAAAGATG 968
Query 895 CTTACGAGCTGGACCAAGCTGCGTTACCAGAATCAATCGAAGAGATCATCGTGCCGTCAA 954
|||||||||||||| ||||||||||||||||| ||||||||||| |||||||||| | |
Sbjct 969 CTTACGAGCTGGACAAAGCTGCGTTACCAGAAACAATCGAAGAGTTCATCGTGCCTTTAG 1028
Query 955 ACTCTGAGAGTGATTTAAAGTCTAAACGTCAAGCCATCTACTTTGCTAGGAAGGGGAAGG 1014
||||||||||| || ||||||||||||| |||| || ||||||||||| ||||| || |
Sbjct 1029 ACTCTGAGAGTAATATAAAGTCTAAACGCCAAGATATATACTTTGCTAGCAAGGGTAATG 1088
Query 1015 TTTTTCAAATTGGCCAGATTTGGTCATTTTGCGGTCTTTATCAAGAGTTT-CCTCTGTAC 1073
|||||| | |||||||||||||||||||| | || | || | ||| |||||||||
Sbjct 1089 TTTTTCTGACTGGCCAGATTTGGTCATTTTACTGTGGTGATGATTC-TTTGCCTCTGTAC 1147
Query 1074 TACGGTAGGATTCAGAAGATCACTTTTACTCAGGTACACGA-GCAGAAGGCAGTATATAA 1132
||||||||||||||||||||||||||||| |||| | | |||| | | |||| |||
Sbjct 1148 TACGGTAGGATTCAGAAGATCACTTTTACCCAGGCATTT-ATGCAGGATCCTGTATGTAA 1206
Query 1133 ATTACATGTAAGTCCTTTAAAGGCTACTCGTTTTCCTTTGGATGTGATCGAGTATGAAGA 1192
||||||| || ||| |||||||||||||||| ||| |||||| ||||| | ||| |
Sbjct 1207 ATTACATATAGGTCGGCTAAAGGCTACTCGTTTCCCTGCGGATGTTATCGACTGGGAAAA 1266
Query 1193 CAAGAAGAT-GCCTGTTGGTTGTGGAACTTTCTACGCGAGAAAAGTTCTCGAAATAATCA 1251
|||| || ||||||||||||||||||||||||||| ||||||| ||| ||||||||||
Sbjct 1267 CAAGG-GAACGCCTGTTGGTTGTGGAACTTTCTACGCAAGAAAAGCTCTAGAAATAATCA 1325
Query 1252 GTCCA-GATGATGTTTCACAACAGATAG-TGCCTCAAATCTCCATGGATGGAAATGAATA 1309
||| | ||| ||||||| |||||| | ||||||| ||| || ||||| | ||||||
Sbjct 1326 CCCCAAG-TGAGGTTTCACTTCAGATAACT-CCTCAAACCTCTATTGATGGCATTGAATA 1383
Query 1310 TACCATTCTGCCTAAGATTGGGGAAGTTTGGGTGATATACAGATTCTGGAGT-GAATACA 1368
||||||||| || |||||||| ||||||||||||||||||| || ||||||| | |||
Sbjct 1384 TACCATTCTCCCCAAGATTGGCGAAGTTTGGGTGATATACAAATACTGGAGTCGTG-ACA 1442
Query 1369 GGGAATTC-GACAAGGTTGGTTTATGCAGCT-ATGATATTGTTGAAATTCTTGATGACAC 1426
||| | | || | || |||| ||| || || | |||||||||||||||||||||||
Sbjct 1443 TGGA-TGCAGAGGACTTTAGTTT-TGCTTCTTATAACATTGTTGAAATTCTTGATGACAC 1500
Query 1427 ATTGGACTATAAGGTCCAACTGCTGGAGC 1455
||||| |||||||||||| ||||| |||
Sbjct 1501 CTTGGAGTATAAGGTCCAATTGCTGAAGC 1529
> AT5G18740.1 | Symbols: | Domain of unknown function (DUF3444)
| chr5:6249727-6252042 FORWARD LENGTH=2099
Length=2099
Score = 1437 bits (778), Expect = 0.0
Identities = 1136/1307 (87%), Gaps = 31/1307 (2%)
Strand=Plus/Plus
Query 208 TACAACCAAAGATTTCTGAATCTGTTGG-TCCAAAGTTTAACGACTTTGGTAAGCTGAGG 266
||| || ||||||||||| || || ||| | ||| ||||||||||||| ||||||||||
Sbjct 601 TACCACAAAAGATTTCTGGATTTGCTGGTTTGAAA-TTTAACGACTTTGATAAGCTGAGG 659
Query 267 GAAGAAGTAAACTTTGCGGTTGGTCAGACCTGGGCTCTTTATGATACAACT-G--GG-AT 322
|||||||||||||| | ||||| |||||||||||| ||| |||| | | | | || ||
Sbjct 660 GAAGAAGTAAACTTCGAAGTTGGGCAGACCTGGGCTATTTTTGAT-CCAGTGGATGGAAT 718
Query 323 GCCTAGATTGTATGCTCAGATCAGGAAAGTTTCAGCTCCTTGTTTTGGTCTTAGGATTAC 382
|||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 719 GCCTAGATTGTATGCTAAGATCATAAAAGTTTCAGCTCCTTGTTTTGGTCTTAGGATTAC 778
Query 383 ATATCTAGAGCCAGATCCAAATGGTGAGAAAGAGCTCCAATGGTTTGAAGAAGACTTGCC 442
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 779 ATATCTAGAGCCAGATCCAGATGGTGAGAAAGAGCTCCAATGGTTTGAAGAAGACTTGCC 838
Query 443 TGTTTCTGTTGGTATGTTCAGGCTTGGGGAAAATAAGAGCACACAAGATCGGTCAATATT 502
|||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 839 TGTTTCTGTTGGTAACTTCAGGCTTGGGGAAAATAAGTGCACACAAGATCGTTCAATATT 898
Query 503 TTCACATGTTATTCATTGCAGTGAACGAAGCAACACTCTTTGTTTCAGCGTCACTTGTCG 562
||||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 899 TTCACATGTGATTCATTGCAATGAATTAAGCAACACTCTTTGTTTCAGCGTCACTTGTCG 958
Query 563 TTTCATCAACACTTGTCATTTTAGTGTATCCCCTAGAAAAGACGAGACTTGGGCGCTTTT 622
||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||
Sbjct 959 TTTCATCAACACTTGTCATTTTAGTGTATCCCCTAGAGAAGGCGAGACATGGGCGCTTTT 1018
Query 623 CAAGAACTGGGATATTAAGTGGTCTTCAGAGCCAGATTCTCACCGCAAATTTGAGTATGA 682
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 1019 CAAGAACTGGGATATTAAGTGGTCTTCAGAGCCAGATTCTCACCGCAAATATGAGTACGA 1078
Query 683 ATTTGTCGAGATTCTGTCAGATTACGCGGATGAAGCTGGTGTATATGTTGCATACTTGCA 742
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1079 ATTTGTCGAGATTCTGTCAGATTACGCTGATGAAGCTGGTGTATATGTTGCATACTTACA 1138
Query 743 TAAAGCAAAAGGATTTGCTAGTGTGTTCTTCCGAATGGGAACTGGTTATGAAGGTATATT 802
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1139 TAAAGCAAAAGGATTTGCTAGTGTGTTCCTCCGAATGGGAACTGGTTATGAAGGTATATT 1198
Query 803 TCGTATTTTACCTCACAGTTTGTATCGGTTCTCCCATAGGGTTCCTTCCTTCAAACTGAC 862
|||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1199 TCGTATTTTACCTCGCAGTTTGTATCGGTTCTCCCATAGGGTCCCTTCCTTCAAACTGAC 1258
Query 863 TGGAATTGAA-GGAAAAGGTGTGCCAAAAGATGCTTACGAGCTGGACCAAGCTGCGTTAC 921
||| | ||| ||||||| | |||||||||||||||| ||||| ||||||||||| ||||
Sbjct 1259 AGGAGT-GAAAGGAAAAGATATGCCAAAAGATGCTTATGAGCTAGACCAAGCTGCCTTAC 1317
Query 922 CAGAATCAATCGAAGAGATCATCGTGCCGTCAAACTCTGAGAGTGATTTAAAGTCTAAAC 981
||||| |||| ||||||||||| ||||| |||||||||||||| || ||||||||||||
Sbjct 1318 CAGAAACAATTGAAGAGATCATTGTGCCTTCAAACTCTGAGAGCAATATAAAGTCTAAAC 1377
Query 982 GTCAAGCCATCTACTTTGCTAGGAAGGGGA-AGGTTTTTCAAATTGGCCAGATTTGGTCA 1040
| |||||||||||| ||||||| ||||| | |||||||||| | ||||||||| ||||||
Sbjct 1378 GCCAAGCCATCTACATTGCTAGCAAGGG-ATAGGTTTTTCAGACTGGCCAGATCTGGTCA 1436
Query 1041 TTTTGCGGTCTTTATCAAGAGTTT-CCTCTGTACTACGGTAGGATTCAGAAGATCACTTT 1099
|||| | || |||| | || ||| ||||||||||| |||||||||||||||||||||||
Sbjct 1437 TTTTACAGTGGTTATGATGA-TTTGCCTCTGTACTATGGTAGGATTCAGAAGATCACTTT 1495
Query 1100 TACTCAGGTACACGAGCAGAAGGCAGTATAT-AAATTACATGTAAGTCCTTTAAAGGCTA 1158
|||||||| | ||||| | | ||| || ||| |||| || ||| |||||||||
Sbjct 1496 TACTCAGGCATTTAAGCAGGACCCTGTA-ATTAAACTACACATAGGTCGGCTAAAGGCTA 1554
Query 1159 CTCGTTTTCCTTTGGATGTGATCGAGTATGAAGACAAG-AAGATGCCTGTTGGTTGTGGA 1217
| | || ||| |||||| ||||| | ||||||| | || ||||||||||||||||||
Sbjct 1555 CCCATTCCCCTAAGGATGTTATCGACTGGGAAGACAGGCAA-ATGCCTGTTGGTTGTGGA 1613
Query 1218 ACTTTCTACGCGAGAAAAGTTCTCGAAATAATCAGTCCAGATGATGTTTCACAACAGATA 1277
|| |||||| | ||||| ||||| |||||||||| ||| |||| |||||||| ||| ||
Sbjct 1614 ACATTCTACTCAAGAAACGTTCTAGAAATAATCACCCCAAATGAGGTTTCACATCAGGTA 1673
Query 1278 GTGCCTCAAATCTCCATGGATGGAAATGAATATACCATTCTGCCTAAGATTGGGGAAGTT 1337
|| ||||||| ||| |||||||| | ||||||||| ||||| || |||||||| ||| ||
Sbjct 1674 GTTCCTCAAACCTCAATGGATGGCATTGAATATACTATTCTACCCAAGATTGGTGAACTT 1733
Query 1338 TGGGTGATATACAGATTCTGGAGT-GAATACAGGGAA-TTCGACAAGGTTGGT-TTATGC 1394
| |||||||||||||| ||||||| | | | || || || | |||| || ||
Sbjct 1734 TAGGTGATATACAGATACTGGAGTAGTCTT-ATTGATGTT-GAGGAC-TTGGAGTT-TGG 1789
Query 1395 AGCT--ATGATATTGTTGAAATTCTTGATGACACATTGGACTATAAGGTCCAACTGCTGG 1452
|| |||| || |||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 1790 T-CTTTATGACATGGTTGAAGTTCTTGATGACACTTTGGACTATAAGGTCCAACTGCTGG 1848
Query 1453 AGCGCCAC-CACGGTCCTGATGAAT-ATGAAGATGAAGATGAATATG 1497
|| | | | || || |||||| | |||| ||||| |||||| |||
Sbjct 1849 AGTACGAATC-CGTTCATGATGA-TGATGATGATGACGATGAAAATG 1893
> AT5G18730.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Molecular
chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609);
BEST Arabidopsis thaliana protein match is: Domain of
unknown function (DUF3444) (TAIR:AT5G18740.1); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12; Bacteria
- 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037;
Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). |
chr5:6246763-6249405 FORWARD LENGTH=2405
Length=2405
Score = 1395 bits (755), Expect = 0.0
Identities = 1104/1268 (87%), Gaps = 42/1268 (3%)
Strand=Plus/Plus
Query 208 TACAACCAAAGATTTCTGAATCTGTTGG-TCCAAAGTTTAACGACTTTGGTAAGCTGAGG 266
||| || ||||||||||| || || ||| | ||| ||||| ||||||| || |||||||
Sbjct 705 TACCACAAAAGATTTCTGGATGTGCTGGTTTGAAA-TTTAATGACTTTGATAGGCTGAGG 763
Query 267 GAAGAAGTAAACTTTGCGGTTGGTCAGACCTGGGCTCTTTATGATACA-AC--TGG---- 319
|||| |||||| |||| | |||||| ||||||||| ||||| ||| | || |||
Sbjct 764 GAAGGAGTAAAGTTTGAAGCTGGTCAAACCTGGGCTATTTATAATA-ATACGGTGGATCA 822
Query 320 GATGCCTAGATTGTATGCTCAGATCAGGAAAGTTTCAGCTCCTTGTTTTGGTCTTAGGAT 379
||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 823 GATGCCTAGATTGTATGCTCAGATCAGAAAAGTTTCAGCTCCTTGTTTTAGTCTTAGGAT 882
Query 380 TACATATCTAGAGCCAGATCCAAATGGTGAGAAAGAG-CTCCAATGGTTTGAAGAAGACT 438
|||||||||||||||||||||| |||||||||||||| | |||||||||||| |||||||
Sbjct 883 TACATATCTAGAGCCAGATCCAGATGGTGAGAAAGAGAC-CCAATGGTTTGAGGAAGACT 941
Query 439 TGCCTGTTTCTGTTGGTATGTTCAGGCTTGGGGAAAATAAGAGCACACAAGATCGGTCAA 498
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |
Sbjct 942 TGCCTGTTTCTGTTGGTAAATTCAGGCTTGGGGAAAATAAGAGCACACAAGATCGTTCCA 1001
Query 499 TATTTTCACATGTTATTCATTGCAGTGAACGAAGCAACACTCTTTGTTTCAGCGTCACTT 558
|||||||||||||||||||||||| |||||| ||||||||| |||||||||| ||||||
Sbjct 1002 TATTTTCACATGTTATTCATTGCAATGAACGGAGCAACACTAGTTGTTTCAGCATCACTT 1061
Query 559 GTCGTTTCATCAACACTTGTCATTTTAGTGTATCCCCTAGAAAAGACGAGACTTGGGCGC 618
||||||||||| ||||||| |||||||||||||| |||||||||| |||||| |||||||
Sbjct 1062 GTCGTTTCATCGACACTTGCCATTTTAGTGTATCACCTAGAAAAGGCGAGACATGGGCGC 1121
Query 619 TTTTCAAGAACTGGGATATTAAGTGGTCTTCAGAGCCAGATTCTCACCGCAAATTTGAGT 678
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 1122 TTTTCAAGAACTGGGATATTAAGTGGTCTTCAGAGCTAGATTCTCACCGCAAATATGAGT 1181
Query 679 ATGAATTTGTCGAGATTCTGTCAGATTACGCGGATGAAGCTGGTGTATATGTTGCATACT 738
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1182 ATGAATTTGTCGAGATTCTGTCAGATTACGCGGATGAAGCTGGTGTATATGTTGCATACT 1241
Query 739 TGCATAAAGCAAAAGGATTTGCTAGTGTGTTCTTCCGAATGGGAACTGGTTATGAAGGTA 798
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1242 TGCATAAAGCAAAAGGGTTTGCTAGTGTGTTCTTCCGAATGGGAACTGGTTATGAAGGTA 1301
Query 799 TATTTCGTATTTTACCTCACAGTTTGTATCGGTTCTCCCATAGGGTTCCTTCCTTCAAAC 858
|||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 1302 TATTTCGTATTTTACCTCGCAGTTTGTATCGGTTCTCTCATAGGGTTCCTTCCTTCAAAT 1361
Query 859 TGACTGGA-ATTGAAGGAAAAGGTGTGCCAAAAGATGCTTACGAGCTGGACCAAGCTGCG 917
|||||||| | |||||||| |||||| |||| |||||||| |||||||| ||||||||
Sbjct 1362 TGACTGGAGAC-GAAGGAAACGGTGTGGCAAAGGATGCTTATGAGCTGGATGAAGCTGCG 1420
Query 918 TTACCAGAATCAATCGAAGAGATCATCGTGCCGTCAAACTCTGAGAGTGATTTAAAGTCT 977
||||| ||| ||||||||||| ||||| |||| ||||||||||||||||| |||||||
Sbjct 1421 TTACCTGAAACAATCGAAGAGTTCATCATGCCTTCAAACTCTGAGAGTGAAACAAAGTCT 1480
Query 978 AAACGTCAAGCCATCTACTTTGCTAG-GAAGGGGAAGGTTTTTCAAATTGGCCAGATTTG 1036
||| |||||||||||||||||||| || ||| ||||| ||||||| ||||||||| ||
Sbjct 1481 GAACACCAAGCCATCTACTTTGCTAGTGA-GGGAAAGGTCTTTCAAACTGGCCAGATCTG 1539
Query 1037 GTCATTTTGCGGTCTTTATCAAGAGTTT-CCTCTGTACTACGGTAGGATTCAGAAGATCA 1095
||||||| | || |||| | || ||| ||||| ||||| |||||||||||||||||||
Sbjct 1540 GTCATTTCACAGTGGTTATGATGA-TTTGCCTCTATACTATGGTAGGATTCAGAAGATCA 1598
Query 1096 CTTTTACTCAGGTACACGAGCAGAAGGCAGTATAT-AAATTACATGTAAGTCCTT-TAAA 1153
|||||||||||| | ||||| | | ||| || ||| |||| |||| || ||||
Sbjct 1599 CTTTTACTCAGGCATTTAAGCAGGATCCGGTA-ATTAAACTACACATAAG-CCGGCTAAA 1656
Query 1154 GGCTACTCGTTTTCCTTTGGATGTGATCGAGTATGAAG-ACAAGAAGA-TGCCTGTTGGT 1211
|||||||||||| ||| ||||| ||| | | |||| || | || |||||||||||
Sbjct 1657 GGCTACTCGTTTCCCTGAAGATGTTATCAACTG-GAAGTACGGGG-GAATGCCTGTTGGT 1714
Query 1212 TGTGGAACTTTCTACGCGAGAAAAGTTCTCGAAATAATCAGTCC-AGATGATGTTTCACA 1270
|||||||| ||||||||||||||||||| |||||||||| || || ||| ||||||||
Sbjct 1715 TGTGGAACATTCTACGCGAGAAAAGTTCAAGAAATAATCACCCCGAG-TGAGGTTTCACA 1773
Query 1271 ACAGATAGTGCCTCAAATCTCCATGGATGGAAATGAATATACCATTCTGCCTAAGATTGG 1330
|||||| ||||||||| |||||||||||| | ||||||||||||||| || ||||||||
Sbjct 1774 TCAGATAATGCCTCAAACCTCCATGGATGGCATTGAATATACCATTCTCCCCAAGATTGG 1833
Query 1331 GGAAGTTTGGGTGATATACAGATTCTGGAGT-GAATACAGGGAAT-TCGA-CAAGGTTGG 1387
|||||||||| ||||||||||| ||||||| | |||| || | |||| | | ||||
Sbjct 1834 TGAAGTTTGGGCGATATACAGATACTGGAGTCGT-TACATTGA-TGTCGATC--GCTTGG 1889
Query 1388 TTTATGCAG-CT--ATGATATTGTTGAAATTCTTGATGACACAT-TGGACTATAAGGTCC 1443
| | | | || |||| ||||||||||||||||||||||| | |||||||||||||||
Sbjct 1890 AAT-T-CGGTCTTTATGACATTGTTGAAATTCTTGATGACAC-TCTGGACTATAAGGTCC 1946
Query 1444 AACTGCTG 1451
||||||||
Sbjct 1947 AACTGCTG 1954
> AT5G18710.1 | Symbols: | Domain of unknown function (DUF3444)
| chr5:6241134-6243479 FORWARD LENGTH=1918
Length=1918
Score = 152 bits (82), Expect = 1e-35
Identities = 181/227 (80%), Gaps = 14/227 (6%)
Strand=Plus/Plus
Query 243 TTT-AACGACTTTGGTAAGCTGAGGGAAGAAGTAAACTTTGCGGTTGGTCAGACCTGGGC 301
||| || ||||||| ||||||||||||||||||| |||||| ||||| |||||||||||
Sbjct 474 TTTCAATGACTTTGATAAGCTGAGGGAAGAAGTACACTTTGAAGTTGGCCAGACCTGGGC 533
Query 302 TCTTTATGATACA----ACTGGGATGCCTAGATTGTATGCTCAGATCAG-GAAAGTTTCA 356
||||||||||||| | ||||||||||||||||||||||||||||| ||| ||||
Sbjct 534 TCTTTATGATACAGTGGA-TGGGATGCCTAGATTGTATGCTCAGATCAAAGAA-GTTTTT 591
Query 357 GCTCCTTGTTTTGGTCTTAG-GATTACATATCTAGAGCCAGATCCAAATGGTGAGAAAG- 414
| | || ||||| | ||| | | || | || ||||| |||||| ||| ||| ||
Sbjct 592 GTTTCTGGTTTTAATGTTACTG-TCACGTGGCTTGAGCCTGATCCATATGACGAGGAACC 650
Query 415 AGCTCCA-ATGGTTTGAAGAAGACTTGCCTGTTTCTGTTGGTATGTT 460
| | || | ||| |||| |||||||||||||||||||||||| |||
Sbjct 651 AA-TACAGA-GGTATGAAAAAGACTTGCCTGTTTCTGTTGGTAGGTT 695
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86897143395
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5