BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg941401 Length=1768 Score E Sequences producing significant alignments: (Bits) Value AT5G18740.1 | Symbols: | Domain of unknown function (DUF3444) ... 555 7e-157 AT5G18720.1 | Symbols: | Domain of unknown function (DUF3444) ... 429 4e-119 AT5G18730.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Molecular... 307 2e-82 AT5G18710.1 | Symbols: | Domain of unknown function (DUF3444) ... 172 8e-42 > AT5G18740.1 | Symbols: | Domain of unknown function (DUF3444) | chr5:6249727-6252042 FORWARD LENGTH=2099 Length=2099 Score = 555 bits (300), Expect = 7e-157 Identities = 691/876 (79%), Gaps = 42/876 (5%) Strand=Plus/Plus Query 614 CCCAAGAAAAGGTGAGACGTGGGCTCTGTTCAAGAACTGGGACATTAACTGGTCTTCAGA 673 ||| ||| |||| ||||| ||||| || |||||||||||||| ||||| ||||||||||| Sbjct 989 CCCTAGAGAAGGCGAGACATGGGCGCTTTTCAAGAACTGGGATATTAAGTGGTCTTCAGA 1048 Query 674 GCCAGATTCTCACCGCAAATTTGAGTATGAGTTTGTTGAGATTTTGTCAGATTACGCTGA 733 |||||||||||||||||||| |||||| || ||||| |||||| |||||||||||||||| Sbjct 1049 GCCAGATTCTCACCGCAAATATGAGTACGAATTTGTCGAGATTCTGTCAGATTACGCTGA 1108 Query 734 TGGAA-CTGGTGTATCTCTTGCATTCTTGCATAAAGCAAAAGGGTTTGCAAGTGTCTTCT 792 || || ||||||||| | |||||| ||| |||||||||||||| ||||| ||||| ||| Sbjct 1109 TG-AAGCTGGTGTATATGTTGCATACTTACATAAAGCAAAAGGATTTGCTAGTGTGTTCC 1167 Query 793 TTCGGATGGGAACTGGTGATGCAGAAATATCTCGAATTCCGCCTCATGGTTTATATCGGT 852 | || |||||||||||| ||| || |||| ||| ||| |||| |||| ||||||| Sbjct 1168 TCCGAATGGGAACTGGTTATGAAGGTATATTTCGTATTTTACCTCGCAGTTTGTATCGGT 1227 Query 853 TCTCCCACAGGATTCCTTCCTTCAAACTGACTGGAATTGAA-GGAAAAGGTTTGCCAAAA 911 ||||||| ||| | ||||||||||||||||| ||| | ||| ||||||| | |||||||| Sbjct 1228 TCTCCCATAGGGTCCCTTCCTTCAAACTGACAGGAGT-GAAAGGAAAAGATATGCCAAAA 1286 Query 912 GACGCATACGAGCTGGACCAAGTTGTATTACCTGAAACTATCAAAGAGATAATTGTCCCT 971 || || || ||||| ||||||| || ||||| ||||| || ||||||| ||||| ||| Sbjct 1287 GATGCTTATGAGCTAGACCAAGCTGCCTTACCAGAAACAATTGAAGAGATCATTGTGCCT 1346 Query 972 TTTTATCTATTAGCAGTGCGTACCGCTTTGAAGTCTAAAC-CAGAAGCTC-TCTGCTTTG 1029 | | || | || || | | | | |||||||||| | |||| | ||| | ||| Sbjct 1347 TCAAA-CTCTGAG-AG--CA-A----TATAAAGTCTAAACGCC-AAGC-CATCTACATTG 1395 Query 1030 CTAATAAGGGAAAGGTTTTTAAAACTGGGCAGATTTGGTC-TTATTATAG-GCTATACAA 1087 ||| |||||| |||||||| | ||||| ||||| ||||| || ||| || | | || | Sbjct 1396 CTAGCAAGGGATAGGTTTTTCAGACTGGCCAGATCTGGTCATT-TTACAGTGGT-TATGA 1453 Query 1088 ACGCTTC-CCTCGGTACTACGGTAGAATTGAAAAGATCACTTTAACTCAGGCATTCGAGC 1146 | || |||| |||||| ||||| ||| | ||||||||||| ||||||||||| ||| Sbjct 1454 T-GATTTGCCTCTGTACTATGGTAGGATTCAGAAGATCACTTTTACTCAGGCATTTAAGC 1512 Query 1147 AGGATGCAGTA-TGTACACTACACATAAGTCGGTTAAAGGCCACTCCTTTCCC-TGAGGA 1204 |||| | ||| | || |||||||||| ||||| ||||||| || || ||||| | |||| Sbjct 1513 AGGACCCTGTAAT-TAAACTACACATAGGTCGGCTAAAGGCTAC-CCATTCCCCTAAGGA 1570 Query 1205 TGTCGTCAAGTGGGATGACAAT-AGAATGCCTGTTGGTTGTGGAACTTTCTTGGTGATGA 1263 ||| || | ||||| |||| | ||||||||||||||||||||| |||| | | || Sbjct 1571 TGTTATCGACTGGGAAGACAGGCA-AATGCCTGTTGGTTGTGGAACATTCTAC-TCAAGA 1628 Query 1264 AAGGTATC--GAAAGACTCACGCCTTATGAGGTTTCACATCAGATAGTGCCTCAAACCTC 1321 || || || |||| | |||| || ||||||||||||||||| |||| ||||||||||| Sbjct 1629 AACGT-TCTAGAAATAATCACCCCAAATGAGGTTTCACATCAGGTAGTTCCTCAAACCTC 1687 Query 1322 CATGGATGGAAAGGAATATACCATTCTTCCCAAGATTGGCGATCTTTGGGCCATATACAG 1381 |||||||| | |||||||| ||||| ||||||||||| || |||| || |||||||| Sbjct 1688 AATGGATGGCATTGAATATACTATTCTACCCAAGATTGGTGAACTTTAGGTGATATACAG 1747 Query 1382 ATCCTGGTCTCCTCACT-TTGAAGTTGATGG-CTTGGAAAGAT-GGTATGACTATGACGT 1438 || |||| | || | |||| ||||| || |||||| | | ||| | |||||| | Sbjct 1748 ATACTGGAGTAGTCT-TATTGATGTTGA-GGACTTGGA--GTTTGGTCTT--TATGACAT 1801 Query 1439 TGTGGAAGTTCTTGATGACACCTTGGACTATAAGGT 1474 || ||||||||||||||||| |||||||||||||| Sbjct 1802 GGTTGAAGTTCTTGATGACACTTTGGACTATAAGGT 1837 Score = 335 bits (181), Expect = 1e-90 Identities = 284/335 (85%), Gaps = 2/335 (1%) Strand=Plus/Plus Query 262 TACAACCAAAGATTTCTGAATTTGTTGGTCCCAAGTTTAATGACTTTGGTAATCTGAGGG 321 ||| || ||||||||||| ||||| |||| || ||||| ||||||| ||| ||||||| Sbjct 601 TACCACAAAAGATTTCTGGATTTGCTGGTTTGAAATTTAACGACTTTGATAAGCTGAGGG 660 Query 322 AAGAAGTTAACTTTGCGGTTGGCCAGACCTGGGCTCTTTATGATACAACAGATGGGATGC 381 ||||||| ||||| | ||||| |||||||||||| ||| |||| || ||||| |||| Sbjct 661 AAGAAGTAAACTTCGAAGTTGGGCAGACCTGGGCTATTTTTGATCCAGTGGATGGAATGC 720 Query 382 CTAGATTGTATGCTCAGATCAGAAAAGTTTCAGCTCCTTCTTTCGGGCTTAGGATCACAT 441 |||||||||||||| |||||| ||||||||||||||||| ||| || |||||||| |||| Sbjct 721 CTAGATTGTATGCTAAGATCATAAAAGTTTCAGCTCCTTGTTTTGGTCTTAGGATTACAT 780 Query 442 ATCTAGAGCCAGATCCTGATGATGAGAAAGAGCTCCAGTGGTTTGAAGAAGACTTGCCTG 501 |||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||| Sbjct 781 ATCTAGAGCCAGATCCAGATGGTGAGAAAGAGCTCCAATGGTTTGAAGAAGACTTGCCTG 840 Query 502 TTTCTGTTGGTAAGTTCAGGCTTGGCCAAAGTCAGAACACGA-AAGATCGTTCCAGATTC 560 ||||||||||||| ||||||||||| ||| | || ||| | |||||||||| | ||| Sbjct 841 TTTCTGTTGGTAACTTCAGGCTTGGGGAAAATAAGTGCAC-ACAAGATCGTTCAATATTT 899 Query 561 TCTCATCTTATCCAATGCAATGAAGGAAGCAACAC 595 || ||| | || || ||||||||| ||||||||| Sbjct 900 TCACATGTGATTCATTGCAATGAATTAAGCAACAC 934 > AT5G18720.1 | Symbols: | Domain of unknown function (DUF3444) | chr5:6244005-6246227 FORWARD LENGTH=1838 Length=1838 Score = 429 bits (232), Expect = 4e-119 Identities = 411/496 (83%), Gaps = 17/496 (3%) Strand=Plus/Plus Query 118 CTTGTGCTGTGATTGTTGGTGAGAAGAGAAAGATGAACGAATATGGTGGA-AGTAGTAAT 176 ||||||||| || ||||||| |||||||||||| |||||| |||| | || ||| | | | Sbjct 143 CTTGTGCTGAGAGTGTTGGTAAGAAGAGAAAGAGGAACGAGTATGAT-GATAGTTGCATT 201 Query 177 ACTGGAAATCGCGGTGTTGTACA-TACCAATAGAAGAGGGTCAAATGATGATGGAGATAC 235 || || || ||||| |||| | || ||||||||||||||| | ||| |||||||| | Sbjct 202 GCTAGATATATCGGTGCTGTA-AGTAACAATAGAAGAGGGTCTAGTGACAATGGAGATGC 260 Query 236 A-GAAAGGGGAGAAGAGTCGGTACAAATACAACCAAAGATTTCTGAA--T-TTGTTGGTC 291 | | | ||||||||||||| | |||| |||| ||||||||| | ||||||||| Sbjct 261 ATG-CATAGGAGAAGAGTCGG--C----ACAAGCAAACATTTCTGAATGTGTTGTTGGTC 313 Query 292 CCAAGTTTAATGACTTTGGTAATCTGAGGGAAGAAGTTAACTTTGCGGTTGGCCAGACCT 351 | |||||||| |||||| |||| ||||||||||||| |||||| ||||| ||||||| Sbjct 314 CAAAGTTTAACGACTTTAGTAAGCTGAGGGAAGAAGCAAACTTTAAAGTTGGTCAGACCT 373 Query 352 GGGCTCTTTATGATACAACAGATGGGATGCCTAGATTGTATGCTCAGATCAGAAAAGTTT 411 |||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||||| Sbjct 374 GGGCGCTTTATGATACAATGGATGGGATGCCTAGATTGTATGCTCAGATCAGGAAAGTTT 433 Query 412 CAGCTCCTTCTTTCGGGCTTAGGATCACATATCTAGAGCCAGATCCTGATGATGAGAAAG 471 ||||||||| ||| || |||| ||| |||||||||||||||||| | |||||||||||| Sbjct 434 CAGCTCCTTGTTTTGGTCTTATGATTACATATCTAGAGCCAGATTCAAATGATGAGAAAG 493 Query 472 AGCTCCAGTGGTTTGAAGAAGACTTGCCTGTTTCTGTTGGTAAGTTCAGGCTTGGCCAAA 531 ||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||| ||| Sbjct 494 AGCTCCAATGGTTTGAAAAAGACTTGCCTGTTTCTGTTGGTAACTTCAGGCTTGGGGAAA 553 Query 532 GTCAGAACACGAAAGATCGTTCCAGATTCTCTCATCTTATCCAATGCAATGAA-GGAAGC 590 | ||| ||| ||||||||||| | ||| || ||| |||| || ||||||||| ||| || Sbjct 554 ATAAGAGCACAAAAGATCGTTCAATATTTTCACATGTTATTCATTGCAATGAACGGA-GC 612 Query 591 AACACAAGTCGTCTCA 606 ||| | ||| || ||| Sbjct 613 AACGCTAGTTGTTTCA 628 > AT5G18730.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF3444) (TAIR:AT5G18740.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:6246763-6249405 FORWARD LENGTH=2405 Length=2405 Score = 307 bits (166), Expect = 2e-82 Identities = 293/353 (83%), Gaps = 13/353 (4%) Strand=Plus/Plus Query 262 TACAACCAAAGATTTCTGAATTTGTTGGTCCCAAGTTTAATGACTTTGGTAATCTGAGGG 321 ||| || ||||||||||| || || |||| || ||||||||||||| || ||||||| Sbjct 705 TACCACAAAAGATTTCTGGATGTGCTGGTTTGAAATTTAATGACTTTGATAGGCTGAGGG 764 Query 322 AAGAAGTTAACTTTGCGGTTGGCCAGACCTGGGCTCTTTATGATACA-ACAGATGG---- 376 ||| ||| || |||| | ||| || ||||||||| ||||| ||| | || | ||| Sbjct 765 AAGGAGTAAAGTTTGAAGCTGGTCAAACCTGGGCTATTTATAATA-ATAC-GGTGGATCA 822 Query 377 GATGCCTAGATTGTATGCTCAGATCAGAAAAGTTTCAGCTCCTTCTTTCGGGCTTAGGAT 436 |||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||| Sbjct 823 GATGCCTAGATTGTATGCTCAGATCAGAAAAGTTTCAGCTCCTTGTTTTAGTCTTAGGAT 882 Query 437 CACATATCTAGAGCCAGATCCTGATGATGAGAAAGAG-CTCCAGTGGTTTGAAGAAGACT 495 |||||||||||||||||||| |||| |||||||||| | ||| |||||||| ||||||| Sbjct 883 TACATATCTAGAGCCAGATCCAGATGGTGAGAAAGAGAC-CCAATGGTTTGAGGAAGACT 941 Query 496 TGCCTGTTTCTGTTGGTAAGTTCAGGCTTGGCCAAAGTCAGAACACGA-AAGATCGTTCC 554 ||||||||||||||||||| ||||||||||| ||| | ||| ||| | ||||||||||| Sbjct 942 TGCCTGTTTCTGTTGGTAAATTCAGGCTTGGGGAAAATAAGAGCAC-ACAAGATCGTTCC 1000 Query 555 AGATTCTCTCATCTTATCCAATGCAATGAA-GGAAGCAACACAAGTCGTCTCA 606 | ||| || ||| |||| || ||||||||| ||| ||||||| ||| || ||| Sbjct 1001 ATATTTTCACATGTTATTCATTGCAATGAACGGA-GCAACACTAGTTGTTTCA 1052 > AT5G18710.1 | Symbols: | Domain of unknown function (DUF3444) | chr5:6241134-6243479 FORWARD LENGTH=1918 Length=1918 Score = 172 bits (93), Expect = 8e-42 Identities = 278/364 (76%), Gaps = 25/364 (7%) Strand=Plus/Plus Query 297 TTT-AATGACTTTGGTAATCTGAGGGAAGAAGTTA-ACTTTGCGGTTGGCCAGACCTGGG 354 ||| |||||||||| ||| ||||||||||||| || |||||| |||||||||||||||| Sbjct 474 TTTCAATGACTTTGATAAGCTGAGGGAAGAAG-TACACTTTGAAGTTGGCCAGACCTGGG 532 Query 355 CTCTTTATGATACAACAGATGGGATGCCTAGATTGTATGCTCAGATCAGAA-AAGTTTCA 413 |||||||||||||| ||||||||||||||||||||||||||||||| || |||||| Sbjct 533 CTCTTTATGATACAGTGGATGGGATGCCTAGATTGTATGCTCAGATCA-AAGAAGTTTTT 591 Query 414 GCTCCTTCTTTCGG-GCTTAG-GATCACATATCTAGAGCCAGATCC-TGATGATGAGAAA 470 | | || ||| | ||| | |||| | || ||||| ||||| | |||| ||| || Sbjct 592 GTTTCTGGTTTTAATG-TTACTG-TCACGTGGCTTGAGCCTGATCCAT-ATGACGAGGAA 648 Query 471 G-AGCTCCAGTGGTTTGAAGAAGACTTGCCTGTTTCTGTTGGTAAGTTCAGGCTTGGCCA 529 | | ||| ||| |||| |||||||||||||||||||||||| ||| | ||||| | Sbjct 649 CCAA-TACAGAGGTATGAAAAAGACTTGCCTGTTTCTGTTGGTAGGTTTAAACTTGGA-A 706 Query 530 AAG-TCAGAAC-ACGAAAGATCGTTCCAGATTCTCTCATCTTA-TCCAATGCAATGAAGG 586 ||| | ||| | | ||||||| | || || ||||| ||| | || |||||| |||| Sbjct 707 AAGATGAGA-CTATTAAAGATCACACAAGGTTTTCTCA-CTTGGTTCATTGCAATAAAGG 764 Query 587 AAGCAACACAAGTCG-TCTCACTGTTT-T-CCCAAGAAAAGGTGAGACGTGGGCTCTGTT 643 ||| | | | || | || ||| | | |||||||| ||| ||||| |||||| | || Sbjct 765 AAGTAGCGCGGGTAAAT-TC--TGTATATACCCAAGAATAGGAGAGACATGGGCTATCTT 821 Query 644 CAAG 647 |||| Sbjct 822 CAAG 825 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 87449349390 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5