BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941401
Length=1768
Score E
Sequences producing significant alignments: (Bits) Value
AT5G18740.1 | Symbols: | Domain of unknown function (DUF3444) ... 555 7e-157
AT5G18720.1 | Symbols: | Domain of unknown function (DUF3444) ... 429 4e-119
AT5G18730.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Molecular... 307 2e-82
AT5G18710.1 | Symbols: | Domain of unknown function (DUF3444) ... 172 8e-42
> AT5G18740.1 | Symbols: | Domain of unknown function (DUF3444)
| chr5:6249727-6252042 FORWARD LENGTH=2099
Length=2099
Score = 555 bits (300), Expect = 7e-157
Identities = 691/876 (79%), Gaps = 42/876 (5%)
Strand=Plus/Plus
Query 614 CCCAAGAAAAGGTGAGACGTGGGCTCTGTTCAAGAACTGGGACATTAACTGGTCTTCAGA 673
||| ||| |||| ||||| ||||| || |||||||||||||| ||||| |||||||||||
Sbjct 989 CCCTAGAGAAGGCGAGACATGGGCGCTTTTCAAGAACTGGGATATTAAGTGGTCTTCAGA 1048
Query 674 GCCAGATTCTCACCGCAAATTTGAGTATGAGTTTGTTGAGATTTTGTCAGATTACGCTGA 733
|||||||||||||||||||| |||||| || ||||| |||||| ||||||||||||||||
Sbjct 1049 GCCAGATTCTCACCGCAAATATGAGTACGAATTTGTCGAGATTCTGTCAGATTACGCTGA 1108
Query 734 TGGAA-CTGGTGTATCTCTTGCATTCTTGCATAAAGCAAAAGGGTTTGCAAGTGTCTTCT 792
|| || ||||||||| | |||||| ||| |||||||||||||| ||||| ||||| |||
Sbjct 1109 TG-AAGCTGGTGTATATGTTGCATACTTACATAAAGCAAAAGGATTTGCTAGTGTGTTCC 1167
Query 793 TTCGGATGGGAACTGGTGATGCAGAAATATCTCGAATTCCGCCTCATGGTTTATATCGGT 852
| || |||||||||||| ||| || |||| ||| ||| |||| |||| |||||||
Sbjct 1168 TCCGAATGGGAACTGGTTATGAAGGTATATTTCGTATTTTACCTCGCAGTTTGTATCGGT 1227
Query 853 TCTCCCACAGGATTCCTTCCTTCAAACTGACTGGAATTGAA-GGAAAAGGTTTGCCAAAA 911
||||||| ||| | ||||||||||||||||| ||| | ||| ||||||| | ||||||||
Sbjct 1228 TCTCCCATAGGGTCCCTTCCTTCAAACTGACAGGAGT-GAAAGGAAAAGATATGCCAAAA 1286
Query 912 GACGCATACGAGCTGGACCAAGTTGTATTACCTGAAACTATCAAAGAGATAATTGTCCCT 971
|| || || ||||| ||||||| || ||||| ||||| || ||||||| ||||| |||
Sbjct 1287 GATGCTTATGAGCTAGACCAAGCTGCCTTACCAGAAACAATTGAAGAGATCATTGTGCCT 1346
Query 972 TTTTATCTATTAGCAGTGCGTACCGCTTTGAAGTCTAAAC-CAGAAGCTC-TCTGCTTTG 1029
| | || | || || | | | | |||||||||| | |||| | ||| | |||
Sbjct 1347 TCAAA-CTCTGAG-AG--CA-A----TATAAAGTCTAAACGCC-AAGC-CATCTACATTG 1395
Query 1030 CTAATAAGGGAAAGGTTTTTAAAACTGGGCAGATTTGGTC-TTATTATAG-GCTATACAA 1087
||| |||||| |||||||| | ||||| ||||| ||||| || ||| || | | || |
Sbjct 1396 CTAGCAAGGGATAGGTTTTTCAGACTGGCCAGATCTGGTCATT-TTACAGTGGT-TATGA 1453
Query 1088 ACGCTTC-CCTCGGTACTACGGTAGAATTGAAAAGATCACTTTAACTCAGGCATTCGAGC 1146
| || |||| |||||| ||||| ||| | ||||||||||| ||||||||||| |||
Sbjct 1454 T-GATTTGCCTCTGTACTATGGTAGGATTCAGAAGATCACTTTTACTCAGGCATTTAAGC 1512
Query 1147 AGGATGCAGTA-TGTACACTACACATAAGTCGGTTAAAGGCCACTCCTTTCCC-TGAGGA 1204
|||| | ||| | || |||||||||| ||||| ||||||| || || ||||| | ||||
Sbjct 1513 AGGACCCTGTAAT-TAAACTACACATAGGTCGGCTAAAGGCTAC-CCATTCCCCTAAGGA 1570
Query 1205 TGTCGTCAAGTGGGATGACAAT-AGAATGCCTGTTGGTTGTGGAACTTTCTTGGTGATGA 1263
||| || | ||||| |||| | ||||||||||||||||||||| |||| | | ||
Sbjct 1571 TGTTATCGACTGGGAAGACAGGCA-AATGCCTGTTGGTTGTGGAACATTCTAC-TCAAGA 1628
Query 1264 AAGGTATC--GAAAGACTCACGCCTTATGAGGTTTCACATCAGATAGTGCCTCAAACCTC 1321
|| || || |||| | |||| || ||||||||||||||||| |||| |||||||||||
Sbjct 1629 AACGT-TCTAGAAATAATCACCCCAAATGAGGTTTCACATCAGGTAGTTCCTCAAACCTC 1687
Query 1322 CATGGATGGAAAGGAATATACCATTCTTCCCAAGATTGGCGATCTTTGGGCCATATACAG 1381
|||||||| | |||||||| ||||| ||||||||||| || |||| || ||||||||
Sbjct 1688 AATGGATGGCATTGAATATACTATTCTACCCAAGATTGGTGAACTTTAGGTGATATACAG 1747
Query 1382 ATCCTGGTCTCCTCACT-TTGAAGTTGATGG-CTTGGAAAGAT-GGTATGACTATGACGT 1438
|| |||| | || | |||| ||||| || |||||| | | ||| | |||||| |
Sbjct 1748 ATACTGGAGTAGTCT-TATTGATGTTGA-GGACTTGGA--GTTTGGTCTT--TATGACAT 1801
Query 1439 TGTGGAAGTTCTTGATGACACCTTGGACTATAAGGT 1474
|| ||||||||||||||||| ||||||||||||||
Sbjct 1802 GGTTGAAGTTCTTGATGACACTTTGGACTATAAGGT 1837
Score = 335 bits (181), Expect = 1e-90
Identities = 284/335 (85%), Gaps = 2/335 (1%)
Strand=Plus/Plus
Query 262 TACAACCAAAGATTTCTGAATTTGTTGGTCCCAAGTTTAATGACTTTGGTAATCTGAGGG 321
||| || ||||||||||| ||||| |||| || ||||| ||||||| ||| |||||||
Sbjct 601 TACCACAAAAGATTTCTGGATTTGCTGGTTTGAAATTTAACGACTTTGATAAGCTGAGGG 660
Query 322 AAGAAGTTAACTTTGCGGTTGGCCAGACCTGGGCTCTTTATGATACAACAGATGGGATGC 381
||||||| ||||| | ||||| |||||||||||| ||| |||| || ||||| ||||
Sbjct 661 AAGAAGTAAACTTCGAAGTTGGGCAGACCTGGGCTATTTTTGATCCAGTGGATGGAATGC 720
Query 382 CTAGATTGTATGCTCAGATCAGAAAAGTTTCAGCTCCTTCTTTCGGGCTTAGGATCACAT 441
|||||||||||||| |||||| ||||||||||||||||| ||| || |||||||| ||||
Sbjct 721 CTAGATTGTATGCTAAGATCATAAAAGTTTCAGCTCCTTGTTTTGGTCTTAGGATTACAT 780
Query 442 ATCTAGAGCCAGATCCTGATGATGAGAAAGAGCTCCAGTGGTTTGAAGAAGACTTGCCTG 501
|||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 781 ATCTAGAGCCAGATCCAGATGGTGAGAAAGAGCTCCAATGGTTTGAAGAAGACTTGCCTG 840
Query 502 TTTCTGTTGGTAAGTTCAGGCTTGGCCAAAGTCAGAACACGA-AAGATCGTTCCAGATTC 560
||||||||||||| ||||||||||| ||| | || ||| | |||||||||| | |||
Sbjct 841 TTTCTGTTGGTAACTTCAGGCTTGGGGAAAATAAGTGCAC-ACAAGATCGTTCAATATTT 899
Query 561 TCTCATCTTATCCAATGCAATGAAGGAAGCAACAC 595
|| ||| | || || ||||||||| |||||||||
Sbjct 900 TCACATGTGATTCATTGCAATGAATTAAGCAACAC 934
> AT5G18720.1 | Symbols: | Domain of unknown function (DUF3444)
| chr5:6244005-6246227 FORWARD LENGTH=1838
Length=1838
Score = 429 bits (232), Expect = 4e-119
Identities = 411/496 (83%), Gaps = 17/496 (3%)
Strand=Plus/Plus
Query 118 CTTGTGCTGTGATTGTTGGTGAGAAGAGAAAGATGAACGAATATGGTGGA-AGTAGTAAT 176
||||||||| || ||||||| |||||||||||| |||||| |||| | || ||| | | |
Sbjct 143 CTTGTGCTGAGAGTGTTGGTAAGAAGAGAAAGAGGAACGAGTATGAT-GATAGTTGCATT 201
Query 177 ACTGGAAATCGCGGTGTTGTACA-TACCAATAGAAGAGGGTCAAATGATGATGGAGATAC 235
|| || || ||||| |||| | || ||||||||||||||| | ||| |||||||| |
Sbjct 202 GCTAGATATATCGGTGCTGTA-AGTAACAATAGAAGAGGGTCTAGTGACAATGGAGATGC 260
Query 236 A-GAAAGGGGAGAAGAGTCGGTACAAATACAACCAAAGATTTCTGAA--T-TTGTTGGTC 291
| | | ||||||||||||| | |||| |||| ||||||||| | |||||||||
Sbjct 261 ATG-CATAGGAGAAGAGTCGG--C----ACAAGCAAACATTTCTGAATGTGTTGTTGGTC 313
Query 292 CCAAGTTTAATGACTTTGGTAATCTGAGGGAAGAAGTTAACTTTGCGGTTGGCCAGACCT 351
| |||||||| |||||| |||| ||||||||||||| |||||| ||||| |||||||
Sbjct 314 CAAAGTTTAACGACTTTAGTAAGCTGAGGGAAGAAGCAAACTTTAAAGTTGGTCAGACCT 373
Query 352 GGGCTCTTTATGATACAACAGATGGGATGCCTAGATTGTATGCTCAGATCAGAAAAGTTT 411
|||| ||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 374 GGGCGCTTTATGATACAATGGATGGGATGCCTAGATTGTATGCTCAGATCAGGAAAGTTT 433
Query 412 CAGCTCCTTCTTTCGGGCTTAGGATCACATATCTAGAGCCAGATCCTGATGATGAGAAAG 471
||||||||| ||| || |||| ||| |||||||||||||||||| | ||||||||||||
Sbjct 434 CAGCTCCTTGTTTTGGTCTTATGATTACATATCTAGAGCCAGATTCAAATGATGAGAAAG 493
Query 472 AGCTCCAGTGGTTTGAAGAAGACTTGCCTGTTTCTGTTGGTAAGTTCAGGCTTGGCCAAA 531
||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||| |||
Sbjct 494 AGCTCCAATGGTTTGAAAAAGACTTGCCTGTTTCTGTTGGTAACTTCAGGCTTGGGGAAA 553
Query 532 GTCAGAACACGAAAGATCGTTCCAGATTCTCTCATCTTATCCAATGCAATGAA-GGAAGC 590
| ||| ||| ||||||||||| | ||| || ||| |||| || ||||||||| ||| ||
Sbjct 554 ATAAGAGCACAAAAGATCGTTCAATATTTTCACATGTTATTCATTGCAATGAACGGA-GC 612
Query 591 AACACAAGTCGTCTCA 606
||| | ||| || |||
Sbjct 613 AACGCTAGTTGTTTCA 628
> AT5G18730.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Molecular
chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609);
BEST Arabidopsis thaliana protein match is: Domain of
unknown function (DUF3444) (TAIR:AT5G18740.1); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12; Bacteria
- 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037;
Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). |
chr5:6246763-6249405 FORWARD LENGTH=2405
Length=2405
Score = 307 bits (166), Expect = 2e-82
Identities = 293/353 (83%), Gaps = 13/353 (4%)
Strand=Plus/Plus
Query 262 TACAACCAAAGATTTCTGAATTTGTTGGTCCCAAGTTTAATGACTTTGGTAATCTGAGGG 321
||| || ||||||||||| || || |||| || ||||||||||||| || |||||||
Sbjct 705 TACCACAAAAGATTTCTGGATGTGCTGGTTTGAAATTTAATGACTTTGATAGGCTGAGGG 764
Query 322 AAGAAGTTAACTTTGCGGTTGGCCAGACCTGGGCTCTTTATGATACA-ACAGATGG---- 376
||| ||| || |||| | ||| || ||||||||| ||||| ||| | || | |||
Sbjct 765 AAGGAGTAAAGTTTGAAGCTGGTCAAACCTGGGCTATTTATAATA-ATAC-GGTGGATCA 822
Query 377 GATGCCTAGATTGTATGCTCAGATCAGAAAAGTTTCAGCTCCTTCTTTCGGGCTTAGGAT 436
|||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||
Sbjct 823 GATGCCTAGATTGTATGCTCAGATCAGAAAAGTTTCAGCTCCTTGTTTTAGTCTTAGGAT 882
Query 437 CACATATCTAGAGCCAGATCCTGATGATGAGAAAGAG-CTCCAGTGGTTTGAAGAAGACT 495
|||||||||||||||||||| |||| |||||||||| | ||| |||||||| |||||||
Sbjct 883 TACATATCTAGAGCCAGATCCAGATGGTGAGAAAGAGAC-CCAATGGTTTGAGGAAGACT 941
Query 496 TGCCTGTTTCTGTTGGTAAGTTCAGGCTTGGCCAAAGTCAGAACACGA-AAGATCGTTCC 554
||||||||||||||||||| ||||||||||| ||| | ||| ||| | |||||||||||
Sbjct 942 TGCCTGTTTCTGTTGGTAAATTCAGGCTTGGGGAAAATAAGAGCAC-ACAAGATCGTTCC 1000
Query 555 AGATTCTCTCATCTTATCCAATGCAATGAA-GGAAGCAACACAAGTCGTCTCA 606
| ||| || ||| |||| || ||||||||| ||| ||||||| ||| || |||
Sbjct 1001 ATATTTTCACATGTTATTCATTGCAATGAACGGA-GCAACACTAGTTGTTTCA 1052
> AT5G18710.1 | Symbols: | Domain of unknown function (DUF3444)
| chr5:6241134-6243479 FORWARD LENGTH=1918
Length=1918
Score = 172 bits (93), Expect = 8e-42
Identities = 278/364 (76%), Gaps = 25/364 (7%)
Strand=Plus/Plus
Query 297 TTT-AATGACTTTGGTAATCTGAGGGAAGAAGTTA-ACTTTGCGGTTGGCCAGACCTGGG 354
||| |||||||||| ||| ||||||||||||| || |||||| ||||||||||||||||
Sbjct 474 TTTCAATGACTTTGATAAGCTGAGGGAAGAAG-TACACTTTGAAGTTGGCCAGACCTGGG 532
Query 355 CTCTTTATGATACAACAGATGGGATGCCTAGATTGTATGCTCAGATCAGAA-AAGTTTCA 413
|||||||||||||| ||||||||||||||||||||||||||||||| || ||||||
Sbjct 533 CTCTTTATGATACAGTGGATGGGATGCCTAGATTGTATGCTCAGATCA-AAGAAGTTTTT 591
Query 414 GCTCCTTCTTTCGG-GCTTAG-GATCACATATCTAGAGCCAGATCC-TGATGATGAGAAA 470
| | || ||| | ||| | |||| | || ||||| ||||| | |||| ||| ||
Sbjct 592 GTTTCTGGTTTTAATG-TTACTG-TCACGTGGCTTGAGCCTGATCCAT-ATGACGAGGAA 648
Query 471 G-AGCTCCAGTGGTTTGAAGAAGACTTGCCTGTTTCTGTTGGTAAGTTCAGGCTTGGCCA 529
| | ||| ||| |||| |||||||||||||||||||||||| ||| | ||||| |
Sbjct 649 CCAA-TACAGAGGTATGAAAAAGACTTGCCTGTTTCTGTTGGTAGGTTTAAACTTGGA-A 706
Query 530 AAG-TCAGAAC-ACGAAAGATCGTTCCAGATTCTCTCATCTTA-TCCAATGCAATGAAGG 586
||| | ||| | | ||||||| | || || ||||| ||| | || |||||| ||||
Sbjct 707 AAGATGAGA-CTATTAAAGATCACACAAGGTTTTCTCA-CTTGGTTCATTGCAATAAAGG 764
Query 587 AAGCAACACAAGTCG-TCTCACTGTTT-T-CCCAAGAAAAGGTGAGACGTGGGCTCTGTT 643
||| | | | || | || ||| | | |||||||| ||| ||||| |||||| | ||
Sbjct 765 AAGTAGCGCGGGTAAAT-TC--TGTATATACCCAAGAATAGGAGAGACATGGGCTATCTT 821
Query 644 CAAG 647
||||
Sbjct 822 CAAG 825
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87449349390
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5