BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg941403

Length=2023
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G18740.1 | Symbols:  | Domain of unknown function (DUF3444) ...   265    1e-69


> AT5G18740.1 | Symbols:  | Domain of unknown function (DUF3444) 
| chr5:6249727-6252042 FORWARD LENGTH=2099
Length=2099

 Score =  265 bits (143),  Expect = 1e-69
 Identities = 305/381 (80%), Gaps = 20/381 (5%)
 Strand=Plus/Plus

Query  558   GTCATTTCATTGTTTCCCCATTA-A-AAGGCGAGACTTGGGCTCTGTTCAAGAACTGGGA  615
             ||||||| | ||| |||||  || | |||||||||| ||||| || ||||||||||||||
Sbjct  973   GTCATTTTAGTGTATCCCC--TAGAGAAGGCGAGACATGGGCGCTTTTCAAGAACTGGGA  1030

Query  616   CATTAACTGGTCTTCAGAGCCAGATTCTCACCGCAAATTTGAGTATGACTTTGTTGAGAT  675
              ||||| ||||||||||||||||||||||||||||||| |||||| || ||||| |||||
Sbjct  1031  TATTAAGTGGTCTTCAGAGCCAGATTCTCACCGCAAATATGAGTACGAATTTGTCGAGAT  1090

Query  676   TTTGTCAAATTACACTGATGGAGCTGGTGTATCTGTTGCGTTTTTGCATAAAGCAAAAGG  735
             | ||||| ||||| |||||| ||||||||||| |||||| |  || ||||||||||||||
Sbjct  1091  TCTGTCAGATTACGCTGATGAAGCTGGTGTATATGTTGCATACTTACATAAAGCAAAAGG  1150

Query  736   GTTTGCAAGTGTCTTCTTTCGGATGGGAACTGGTGATGCACACATATCTCGGATTCCGCC  795
              ||||| ||||| ||| | || |||||||||||| ||| |   |||| ||| |||   ||
Sbjct  1151  ATTTGCTAGTGTGTTCCTCCGAATGGGAACTGGTTATGAAGGTATATTTCGTATTTTACC  1210

Query  796   T-GACGGTTTATATCGGTTCTCCCACAGGATTCCTTCCTTCAAACTCACTGAAATG---G  851
             | | | |||| |||||||||||||| ||| | |||||||||||||| || | | ||   |
Sbjct  1211  TCG-CAGTTTGTATCGGTTCTCCCATAGGGTCCCTTCCTTCAAACTGACAGGAGTGAAAG  1269

Query  852   GA---G----G--AAAATATGCTTACGAGCTGGACCAAGCTGCATTACCTGAAACTATCA  902
             ||   |    |  |||| ||||||| ||||| ||||||||||| ||||| ||||| ||  
Sbjct  1270  GAAAAGATATGCCAAAAGATGCTTATGAGCTAGACCAAGCTGCCTTACCAGAAACAATTG  1329

Query  903   AAGAG-TCAATCGTCCCTTCA  922
             ||||| ||| | || ||||||
Sbjct  1330  AAGAGATCATT-GTGCCTTCA  1349



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 100250488365


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5