BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg941403 Length=2023 Score E Sequences producing significant alignments: (Bits) Value AT5G18740.1 | Symbols: | Domain of unknown function (DUF3444) ... 265 1e-69 > AT5G18740.1 | Symbols: | Domain of unknown function (DUF3444) | chr5:6249727-6252042 FORWARD LENGTH=2099 Length=2099 Score = 265 bits (143), Expect = 1e-69 Identities = 305/381 (80%), Gaps = 20/381 (5%) Strand=Plus/Plus Query 558 GTCATTTCATTGTTTCCCCATTA-A-AAGGCGAGACTTGGGCTCTGTTCAAGAACTGGGA 615 ||||||| | ||| ||||| || | |||||||||| ||||| || |||||||||||||| Sbjct 973 GTCATTTTAGTGTATCCCC--TAGAGAAGGCGAGACATGGGCGCTTTTCAAGAACTGGGA 1030 Query 616 CATTAACTGGTCTTCAGAGCCAGATTCTCACCGCAAATTTGAGTATGACTTTGTTGAGAT 675 ||||| ||||||||||||||||||||||||||||||| |||||| || ||||| ||||| Sbjct 1031 TATTAAGTGGTCTTCAGAGCCAGATTCTCACCGCAAATATGAGTACGAATTTGTCGAGAT 1090 Query 676 TTTGTCAAATTACACTGATGGAGCTGGTGTATCTGTTGCGTTTTTGCATAAAGCAAAAGG 735 | ||||| ||||| |||||| ||||||||||| |||||| | || |||||||||||||| Sbjct 1091 TCTGTCAGATTACGCTGATGAAGCTGGTGTATATGTTGCATACTTACATAAAGCAAAAGG 1150 Query 736 GTTTGCAAGTGTCTTCTTTCGGATGGGAACTGGTGATGCACACATATCTCGGATTCCGCC 795 ||||| ||||| ||| | || |||||||||||| ||| | |||| ||| ||| || Sbjct 1151 ATTTGCTAGTGTGTTCCTCCGAATGGGAACTGGTTATGAAGGTATATTTCGTATTTTACC 1210 Query 796 T-GACGGTTTATATCGGTTCTCCCACAGGATTCCTTCCTTCAAACTCACTGAAATG---G 851 | | | |||| |||||||||||||| ||| | |||||||||||||| || | | || | Sbjct 1211 TCG-CAGTTTGTATCGGTTCTCCCATAGGGTCCCTTCCTTCAAACTGACAGGAGTGAAAG 1269 Query 852 GA---G----G--AAAATATGCTTACGAGCTGGACCAAGCTGCATTACCTGAAACTATCA 902 || | | |||| ||||||| ||||| ||||||||||| ||||| ||||| || Sbjct 1270 GAAAAGATATGCCAAAAGATGCTTATGAGCTAGACCAAGCTGCCTTACCAGAAACAATTG 1329 Query 903 AAGAG-TCAATCGTCCCTTCA 922 ||||| ||| | || |||||| Sbjct 1330 AAGAGATCATT-GTGCCTTCA 1349 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 100250488365 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5