BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941405
Length=1763
Score E
Sequences producing significant alignments: (Bits) Value
AT5G18730.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Molecular... 1050 0.0
AT5G18740.1 | Symbols: | Domain of unknown function (DUF3444) ... 950 0.0
AT5G18720.1 | Symbols: | Domain of unknown function (DUF3444) ... 822 0.0
AT5G18710.1 | Symbols: | Domain of unknown function (DUF3444) ... 176 6e-43
> AT5G18730.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Molecular
chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609);
BEST Arabidopsis thaliana protein match is: Domain of
unknown function (DUF3444) (TAIR:AT5G18740.1); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12; Bacteria
- 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037;
Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). |
chr5:6246763-6249405 FORWARD LENGTH=2405
Length=2405
Score = 1050 bits (568), Expect = 0.0
Identities = 661/706 (94%), Gaps = 6/706 (1%)
Strand=Plus/Plus
Query 618 TGAACGAAGCAACACTCGTTGTTTCAGCATCACTTGTCGTTTCATCAACACTTGTCATTT 677
|||||| ||||||||| ||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 1027 TGAACGGAGCAACACTAGTTGTTTCAGCATCACTTGTCGTTTCATCGACACTTGCCATTT 1086
Query 678 TAGTGTTTCCCCTAGACAAGGCGAGACATGGGCGCTTTTCAAGAATTGGGATATTAAGTG 737
|||||| || |||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1087 TAGTGTATCACCTAGAAAAGGCGAGACATGGGCGCTTTTCAAGAACTGGGATATTAAGTG 1146
Query 738 GTCTTCAGAGCCAGATTCTCACCGCAAATTTGAGTACGAAATTGTCGAGATTCTGTCAGA 797
||||||||||| ||||||||||||||||| |||||| ||| |||||||||||||||||||
Sbjct 1147 GTCTTCAGAGCTAGATTCTCACCGCAAATATGAGTATGAATTTGTCGAGATTCTGTCAGA 1206
Query 798 TTACTCTGATGAAGGTGGTGTATATGTTGCATACTTGCACAAAGCAAAAGGGTTTGCTAG 857
|||| | ||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1207 TTACGCGGATGAAGCTGGTGTATATGTTGCATACTTGCATAAAGCAAAAGGGTTTGCTAG 1266
Query 858 TGTGTTCTTCCGAATGGGAACCT-TTTATGAAGGTATATTTCGTATTTTACCTCACAGTT 916
|||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||
Sbjct 1267 TGTGTTCTTCCGAATGGGAA-CTGGTTATGAAGGTATATTTCGTATTTTACCTCGCAGTT 1325
Query 917 TGTATCGGTTCTCCCATAGGGTTCCTTCCTTCAAACTGACTGGA-ATTGAAGGAAAAGGT 975
||||||||||||| ||||||||||||||||||||| |||||||| | |||||||| |||
Sbjct 1326 TGTATCGGTTCTCTCATAGGGTTCCTTCCTTCAAATTGACTGGAGA-CGAAGGAAACGGT 1384
Query 976 GTGCCAAAGGATGCTTATGAGCTGGATGAAGCTGCGTTACCAGAAACAATCGAAGAGATT 1035
||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 1385 GTGGCAAAGGATGCTTATGAGCTGGATGAAGCTGCGTTACCTGAAACAATCGAAGAG-TT 1443
Query 1036 -GTTGTGCCTTCAAACTCTGAGAGTaaaaaaaaGTCTAAACACCAAGCCATCTACTTTGC 1094
| |||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||
Sbjct 1444 CATCATGCCTTCAAACTCTGAGAGTGAAACAAAGTCTGAACACCAAGCCATCTACTTTGC 1503
Query 1095 TAGTGAGGGAAAGGTCTTTCAAACTGGCCAGATCTGGTCATTTTACAGTGGTTATGATGA 1154
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1504 TAGTGAGGGAAAGGTCTTTCAAACTGGCCAGATCTGGTCATTTCACAGTGGTTATGATGA 1563
Query 1155 TTTGCCTCTGTATTATGGTAGGATTCAGAAGATCACTTATACTCAGGCATTTAAGCAGGA 1214
||||||||| || ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1564 TTTGCCTCTATACTATGGTAGGATTCAGAAGATCACTTTTACTCAGGCATTTAAGCAGGA 1623
Query 1215 TCCGGTAATTAAACTACACATAAGTAGGCTAAAGGCTACTCGTTTCCCTGAAGATGTTAT 1274
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1624 TCCGGTAATTAAACTACACATAAGCCGGCTAAAGGCTACTCGTTTCCCTGAAGATGTTAT 1683
Query 1275 CAACTGGAAATACGGGGGAATGCCTGTTAGTTGTGGAACTTTCTAC 1320
||||||||| |||||||||||||||||| |||||||||| ||||||
Sbjct 1684 CAACTGGAAGTACGGGGGAATGCCTGTTGGTTGTGGAACATTCTAC 1729
Score = 708 bits (383), Expect = 0.0
Identities = 423/443 (95%), Gaps = 0/443 (0%)
Strand=Plus/Plus
Query 1321 CAGATAATGCCTCAAACCTCCATGGATGGCATTGAATATACCATTCTCCCCAAAATTGGT 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1775 CAGATAATGCCTCAAACCTCCATGGATGGCATTGAATATACCATTCTCCCCAAGATTGGT 1834
Query 1381 GAAGTTTGGGCGATATACAGATACTGGAGTCATTACATTGATGTGGATGGCTTGGAATTC 1440
||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||
Sbjct 1835 GAAGTTTGGGCGATATACAGATACTGGAGTCGTTACATTGATGTCGATCGCTTGGAATTC 1894
Query 1441 GGTCTTTATGACATTGTTGAAATTCTTGATGACACTCTGGATTATAAGGTCCAACTGCTG 1500
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1895 GGTCTTTATGACATTGTTGAAATTCTTGATGACACTCTGGACTATAAGGTCCAACTGCTG 1954
Query 1501 AAGCAACAACCCGTTTCTGATGATCGTAATGATATGGAACATAGGTTGTTTAGGGCATGT 1560
| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1955 ACGCAACAACCTGTTTCTGATGATCGTAATGATATGGAACATAGGTTGTTTAGGGCATGT 2014
Query 1561 ACGGAGTATACTTATAACGAGGATGAAGGGTCGGAACCAATATTTACGATCCCAAAGTCG 1620
||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 2015 ACGGAGTATACTTCTAACGAGGATGATGGGTCGGAACCAATATTTACGATCCCAAAGACG 2074
Query 1621 GAAAGGATCAGATTCTCGAATAAGATTCCTGCTACGCGTGTAACGAAAGAGATGTCCGGA 1680
|||||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||
Sbjct 2075 GAAAGGATCAGATTCTCGAATAAGGTTCCTGCAACGCGTGTAACGAAAGAGATGTACGGA 2134
Query 1681 GAGTTGGAAGACCTTTTAAGTGTTGAGTTTAGGGCAACACCTATAAACGTTATACACTGT 1740
|||||||||||| || || |||||||||||||||||||||||||||||||||||||||
Sbjct 2135 GAGTTGGAAGACAATTCAAAAGTTGAGTTTAGGGCAACACCTATAAACGTTATACACTGT 2194
Query 1741 TGAACAGAGGAATTGAAAGAAGA 1763
|||||||| ||| ||||||||||
Sbjct 2195 TGAACAGATGAACTGAAAGAAGA 2217
Score = 122 bits (66), Expect = 8e-27
Identities = 139/170 (82%), Gaps = 21/170 (12%)
Strand=Plus/Plus
Query 11 TTTTACTTTG-TTTGATGATGGATATCACTGTATATGAGTC-TCTTAGAAGGCAA-AATG 67
||| |||| | ||||||||||||| |||||| | ||||| | |||||||||| || ||||
Sbjct 189 TTTCACTTCGTTTTGATGATGGATGTCACTGCAAATGAG-CTTCTTAGAAGG-AATAATG 246
Query 68 CTGTCCAAAACCATCAGATTAGGAGTGATTTGGTTGCA--G-CCACA-CCAAGGAATCAG 123
||| | |||||||||| ||||||||||||| | | ||| |||| ||| |||
Sbjct 247 ATGT-------C--CAGATTAGGACTGATTTGGTTGCATCGACGACACCCAA-GAACCAG 296
Query 124 CAAGAAAAGGCTCAAGCTTTCTCCTTGCAACAACAGAT-AACAGTCCCAA 172
||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 297 CAAGAAAAGGCTCAAGCTTTCTCCTTGCAACAACAGAAGAA-AGTCCCAA 345
> AT5G18740.1 | Symbols: | Domain of unknown function (DUF3444)
| chr5:6249727-6252042 FORWARD LENGTH=2099
Length=2099
Score = 950 bits (514), Expect = 0.0
Identities = 639/700 (91%), Gaps = 6/700 (1%)
Strand=Plus/Plus
Query 624 AAGCAACACTCGTTGTTTCAGCATCACTTGTCGTTTCATCAACACTTGTCATTTTAGTGT 683
||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 926 AAGCAACACTCTTTGTTTCAGCGTCACTTGTCGTTTCATCAACACTTGTCATTTTAGTGT 985
Query 684 TTCCCCTAGACAAGGCGAGACATGGGCGCTTTTCAAGAATTGGGATATTAAGTGGTCTTC 743
||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 986 ATCCCCTAGAGAAGGCGAGACATGGGCGCTTTTCAAGAACTGGGATATTAAGTGGTCTTC 1045
Query 744 AGAGCCAGATTCTCACCGCAAATTTGAGTACGAAATTGTCGAGATTCTGTCAGATTACTC 803
||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |
Sbjct 1046 AGAGCCAGATTCTCACCGCAAATATGAGTACGAATTTGTCGAGATTCTGTCAGATTACGC 1105
Query 804 TGATGAAGGTGGTGTATATGTTGCATACTTGCACAAAGCAAAAGGGTTTGCTAGTGTGTT 863
|||||||| ||||||||||||||||||||| || ||||||||||| ||||||||||||||
Sbjct 1106 TGATGAAGCTGGTGTATATGTTGCATACTTACATAAAGCAAAAGGATTTGCTAGTGTGTT 1165
Query 864 CTTCCGAATGGGAACCT-TTTATGAAGGTATATTTCGTATTTTACCTCACAGTTTGTATC 922
| |||||||||||| || ||||||||||||||||||||||||||||| |||||||||||
Sbjct 1166 CCTCCGAATGGGAA-CTGGTTATGAAGGTATATTTCGTATTTTACCTCGCAGTTTGTATC 1224
Query 923 GGTTCTCCCATAGGGTTCCTTCCTTCAAACTGACTGGAATTG-AAGGAAAAGGTGTGCCA 981
|||||||||||||||| ||||||||||||||||| || | || ||||||||| | |||||
Sbjct 1225 GGTTCTCCCATAGGGTCCCTTCCTTCAAACTGACAGG-AGTGAAAGGAAAAGATATGCCA 1283
Query 982 AAGGATGCTTATGAGCTGGATGAAGCTGCGTTACCAGAAACAATCGAAGAGATTGTTGTG 1041
|| |||||||||||||| || ||||||| |||||||||||||| |||||||| |||||
Sbjct 1284 AAAGATGCTTATGAGCTAGACCAAGCTGCCTTACCAGAAACAATTGAAGAGATCATTGTG 1343
Query 1042 CCTTCAAACTCTGAGAGTaaaaaaaaGTCTAAACACCAAGCCATCTACTTTGCTAGTGAG 1101
||||||||||||||||| || | ||||||||||| ||||||||||||| ||||||| ||
Sbjct 1344 CCTTCAAACTCTGAGAGCAATATAAAGTCTAAACGCCAAGCCATCTACATTGCTAGCAAG 1403
Query 1102 GGAAAGGTCTTTCAAACTGGCCAGATCTGGTCATTTTACAGTGGTTATGATGATTTGCCT 1161
||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1404 GGATAGGTTTTTCAGACTGGCCAGATCTGGTCATTTTACAGTGGTTATGATGATTTGCCT 1463
Query 1162 CTGTATTATGGTAGGATTCAGAAGATCACTTATACTCAGGCATTTAAGCAGGATCCGGTA 1221
||||| ||||||||||||||||||||||||| ||||||||||||||||||||| || |||
Sbjct 1464 CTGTACTATGGTAGGATTCAGAAGATCACTTTTACTCAGGCATTTAAGCAGGACCCTGTA 1523
Query 1222 ATTAAACTACACATAAGTAGGCTAAAGGCTACTCGTTTCCCTGAAG-ATGTTATCAACTG 1280
||||||||||||||| || ||||||||||||| | || |||| ||| |||||||| ||||
Sbjct 1524 ATTAAACTACACATAGGTCGGCTAAAGGCTACCCATTCCCCT-AAGGATGTTATCGACTG 1582
Query 1281 GAAATACGGGGGAATGCCTGTTAGTTGTGGAACTTTCTAC 1320
| || || || |||||||||| |||||||||| ||||||
Sbjct 1583 GGAAGACAGGCAAATGCCTGTTGGTTGTGGAACATTCTAC 1622
Score = 440 bits (238), Expect = 2e-122
Identities = 370/430 (86%), Gaps = 23/430 (5%)
Strand=Plus/Plus
Query 1330 CCTCAAACCTCCATGGATGGCATTGAATATACCATTCTCCCCAAAATTGGTGAAGTTTGG 1389
||||||||||| |||||||||||||||||||| ||||| ||||| ||||||||| ||| |
Sbjct 1677 CCTCAAACCTCAATGGATGGCATTGAATATACTATTCTACCCAAGATTGGTGAACTTTAG 1736
Query 1390 GCGATATACAGATACTGGAGTCA-T-TACATTGATGTGGATGG-CTTGGAATTCGGTCTT 1446
| ||||||||||||||||||| | | | |||||||| || || |||||| || ||||||
Sbjct 1737 GTGATATACAGATACTGGAGT-AGTCT-TATTGATGTTGA-GGACTTGGAGTTTGGTCTT 1793
Query 1447 TATGACATTGTTGAAATTCTTGATGACACTCTGGATTATAAGGTCCAACTGCTGAAGCAA 1506
|||||||| |||||| |||||||||||||| |||| |||||||||||||||||| || |
Sbjct 1794 TATGACATGGTTGAAGTTCTTGATGACACTTTGGACTATAAGGTCCAACTGCTGGAG-TA 1852
Query 1507 C-AACCCGTT--T-CTGATGAT--CG-T-A--ATG-ATATGGAACATAGGTTGTTTAGGG 1555
| || ||||| | ||||||| | | | ||| | |||| | |||||||||| ||||
Sbjct 1853 CGAATCCGTTCATGATGATGATGATGATGACGATGAAAATGGGA-ATAGGTTGTTCAGGG 1911
Query 1556 CATGTACGGAGTATACTTATAACGAGGATGAAGGGTCGGAACCAATATTTACGATCCCAA 1615
||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 1912 CATGTACGGAGTATACTTATAACGAGGCTGAAGGGTCCGAACCAATATTTACGATCCCAA 1971
Query 1616 AGTCGGAAAGGATCAGATTCTCGAATAAGATTCCTGCTACGCGTGTAACGAAAGAGATGT 1675
|||||||||| |||||||||||||||||| |||||||| | |||||||| |||||||||
Sbjct 1972 AGTCGGAAAGAATCAGATTCTCGAATAAGGTTCCTGCTTCTCGTGTAACCAAAGAGATG- 2030
Query 1676 CC-GGAGAGTTGGAAGACCTTTTAAGTGTTGAGTT-TAGGGCAACACCTATAAACGTTAT 1733
| |||||||| |||| ||||||||||||| || ||||||||| |||||||| |||||
Sbjct 2031 CATGGAGAGTTAAAAGAGTTTTTAAGTGTTGA-TTATAGGGCAACCCCTATAAATGTTAT 2089
Query 1734 ACACTGTTGA 1743
||||||||||
Sbjct 2090 ACACTGTTGA 2099
Score = 353 bits (191), Expect = 3e-96
Identities = 303/356 (85%), Gaps = 12/356 (3%)
Strand=Plus/Plus
Query 268 AATGCTCAACTGGGAGCTGCTA-TAGGG-ATCTCTCAG-AATCTTGAGGTAGAAT-ATAA 323
||||||||| ||||||||| || | ||| | ||||| | ||||||||||| | || | ||
Sbjct 510 AATGCTCAAGTGGGAGCTG-TAGT-GGGAAACTCTC-GAAATCTTGAGGT-GGATCAAAA 565
Query 324 CTCTGGTTTTTGTCATACAAG-TTCAGAAGTTGCAGTACAACCAAAGATTTCTGAATCCG 382
|||||||| ||| || | || |||| || || ||||| || ||||||||||| || |
Sbjct 566 TTCTGGTTTATGTGATTC-AGAATCAGGAGGTGTAGTACCACAAAAGATTTCTGGATTTG 624
Query 383 TTGG-TCCAAAGTTCAACGACTTTGAAAAGCTGAGGGAAGAAGTAAACTTTGCGGTTGGT 441
||| | ||| || ||||||||||| ||||||||||||||||||||||| | |||||
Sbjct 625 CTGGTTTGAAA-TTTAACGACTTTGATAAGCTGAGGGAAGAAGTAAACTTCGAAGTTGGG 683
Query 442 CAGACCTGGGCTATTTATGATACAGTGGATGGGATGCCTAGATTGTATGCTCGGATCATA 501
|||||||||||||||| |||| |||||||||| |||||||||||||||||| |||||||
Sbjct 684 CAGACCTGGGCTATTTTTGATCCAGTGGATGGAATGCCTAGATTGTATGCTAAGATCATA 743
Query 502 AAAGTTTCAGCTCCTTGTTTTGGTCTTAGGATCACATATCTAGAGCCAGATCCAGGTAAT 561
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |
Sbjct 744 AAAGTTTCAGCTCCTTGTTTTGGTCTTAGGATTACATATCTAGAGCCAGATCCAGATGGT 803
Query 562 GAAAAAGAGAAACTATGGTTTGAAGAAGACTTGCCTGTTTCTGTTGGTAAGTTCAG 617
|| |||||| | |||||||||||||||||||||||||||||||||||| |||||
Sbjct 804 GAGAAAGAGCTCCAATGGTTTGAAGAAGACTTGCCTGTTTCTGTTGGTAACTTCAG 859
> AT5G18720.1 | Symbols: | Domain of unknown function (DUF3444)
| chr5:6244005-6246227 FORWARD LENGTH=1838
Length=1838
Score = 822 bits (445), Expect = 0.0
Identities = 622/707 (88%), Gaps = 13/707 (2%)
Strand=Plus/Plus
Query 618 TGAACGAAGCAACACTCGTTGTTTCAGCATCACTTGTCGTTTCATCAACACTTGTCATTT 677
|||||| |||||| || |||||||||||||||||||||||||||||| |||| ||||||
Sbjct 603 TGAACGGAGCAACGCTAGTTGTTTCAGCATCACTTGTCGTTTCATCAGTACTTATCATTT 662
Query 678 TAGTGTTTCCCCTAGACAA-GGCGAGACATGGGCGCTTTTCAAGAATTGGGATATTAAGT 736
|||||| ||||||||| || || ||||| ||||||||||||||||| |||||||||||||
Sbjct 663 TAGTGTATCCCCTAGA-AATGGAGAGACTTGGGCGCTTTTCAAGAACTGGGATATTAAGT 721
Query 737 GGTCTTCAGAGCCAGATTCTCACCGCAAATTTGAGTACGAAATTGTCGAGATTCTGTCAG 796
|||||| | | ||||||||||||||||||| |||||| ||| ||||| ||||||||||||
Sbjct 722 GGTCTTTAAAACCAGATTCTCACCGCAAATATGAGTATGAATTTGTCAAGATTCTGTCAG 781
Query 797 ATTACTCTGATGAAGGTGGTGTATATGTTGCATACTTGCACAAAGCAAAAGGGTTTGCTA 856
||||| |||||||| |||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 782 ATTACGCTGATGAAACTGGTGTATATGTTGCATACTTGCATAAAGCAAAAGGATTTGCTA 841
Query 857 GTGTGTTCTTCCGAATGGGAACCTTTTATGAAGGTATATTTCGTATTTTACCTCACAGTT 916
|||||||||| |||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 842 GTGTGTTCTTTCGAATGGGAAGAGGTTATGAAGGTATATTTCGTATTTTACCTCAGAGTT 901
Query 917 TGTATCGGTTCTCCCATAGGGTTCCTTCCTTCAAACTGACTGGAATTGAAGGAAAAGGTG 976
|||||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 902 TGTATCGGTTCTCCCATAGGATTCCTTCCTT-----TGACTGGAATTGAAGGAAAAGGTG 956
Query 977 TGCCAAAGGATGCTTATGAGCTGGATGAAGCTGCGTTACCAGAAACAATCGAAGAGATTG 1036
||||||| |||||||| |||||||| ||||||||||||||||||||||||||||| ||
Sbjct 957 TGCCAAAAGATGCTTACGAGCTGGACAAAGCTGCGTTACCAGAAACAATCGAAGAG-TTC 1015
Query 1037 TT-GTGCCTTCAAACTCTGAGAGTaaaaaaaaGTCTAAACACCAAGCCATCTACTTTGCT 1095
| ||||||| | ||||||||||||| | ||||||||||| ||||| || |||||||||
Sbjct 1016 ATCGTGCCTTTAGACTCTGAGAGTAATATAAAGTCTAAACGCCAAGATATATACTTTGCT 1075
Query 1096 AGTGAGGGAAAGGTCTTTCAAACTGGCCAGATCTGGTCATTTTACAGTGGTTATGATGAT 1155
|| |||| || || |||| ||||||||||| |||||||||||| ||||| ||||| |
Sbjct 1076 AGCAAGGGTAATGTTTTTCTGACTGGCCAGATTTGGTCATTTTACTGTGGTGATGATTCT 1135
Query 1156 TTGCCTCTGTATTATGGTAGGATTCAGAAGATCACTTATACTCAGGCATTTAAGCAGGAT 1215
||||||||||| || |||||||||||||||||||||| ||| |||||||||| |||||||
Sbjct 1136 TTGCCTCTGTACTACGGTAGGATTCAGAAGATCACTTTTACCCAGGCATTTATGCAGGAT 1195
Query 1216 CCGGTAAT-TAAACTACACATAAGTAGGCTAAAGGCTACTCGTTTCCCTGAAGATGTTAT 1274
|| ||| | |||| |||| ||| || |||||||||||||||||||||||| ||||||||
Sbjct 1196 CCTGTA-TGTAAATTACATATAGGTCGGCTAAAGGCTACTCGTTTCCCTGCGGATGTTAT 1254
Query 1275 CAACTGG-AAATACGGGGGAATGCCTGTTAGTTGTGGAACTTTCTAC 1320
| ||||| ||| || ||||| ||||||| |||||||||||||||||
Sbjct 1255 CGACTGGGAAA-ACAAGGGAACGCCTGTTGGTTGTGGAACTTTCTAC 1300
Score = 291 bits (157), Expect = 2e-77
Identities = 228/262 (87%), Gaps = 5/262 (2%)
Strand=Plus/Plus
Query 360 ACAACCAAAGATTTCTGAA--T-CCGTTGGTCCAAAGTTCAACGACTTTGA-AAAGCTGA 415
|||| |||| ||||||||| | |||||||||||||| ||||||||| | |||||||
Sbjct 282 ACAAGCAAACATTTCTGAATGTGTTGTTGGTCCAAAGTTTAACGACTTT-AGTAAGCTGA 340
Query 416 GGGAAGAAGTAAACTTTGCGGTTGGTCAGACCTGGGCTATTTATGATACAGTGGATGGGA 475
||||||||| ||||||| ||||||||||||||||| ||||||||||| |||||||||
Sbjct 341 GGGAAGAAGCAAACTTTAAAGTTGGTCAGACCTGGGCGCTTTATGATACAATGGATGGGA 400
Query 476 TGCCTAGATTGTATGCTCGGATCATAAAAGTTTCAGCTCCTTGTTTTGGTCTTAGGATCA 535
|||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||| |
Sbjct 401 TGCCTAGATTGTATGCTCAGATCAGGAAAGTTTCAGCTCCTTGTTTTGGTCTTATGATTA 460
Query 536 CATATCTAGAGCCAGATCCAGGTAATGAAAAAGAGAAACTATGGTTTGAAGAAGACTTGC 595
||||||||||||||||| || | |||| |||||| | |||||||||| |||||||||
Sbjct 461 CATATCTAGAGCCAGATTCAAATGATGAGAAAGAGCTCCAATGGTTTGAAAAAGACTTGC 520
Query 596 CTGTTTCTGTTGGTAAGTTCAG 617
|||||||||||||||| |||||
Sbjct 521 CTGTTTCTGTTGGTAACTTCAG 542
Score = 244 bits (132), Expect = 2e-63
Identities = 331/420 (79%), Gaps = 42/420 (10%)
Strand=Plus/Plus
Query 1321 CAGATAA-TGCCTCAAACCTCCATGGATGGCATTGAATATACCATTCTCCCCAAAATTGG 1379
||||||| | ||||||||||| || ||||||||||||||||||||||||||||| |||||
Sbjct 1346 CAGATAACT-CCTCAAACCTCTATTGATGGCATTGAATATACCATTCTCCCCAAGATTGG 1404
Query 1380 TGAAGTTTGGGCGATATACAGATACTGGAGTCATTACATTGATGTGGATGG-CTTGGAAT 1438
|||||||||| |||||||| ||||||||||| | |||| |||| || || ||| | |
Sbjct 1405 CGAAGTTTGGGTGATATACAAATACTGGAGTCGTGACATGGATGCAGA-GGACTTT-AGT 1462
Query 1439 TCGG-T-CTTTATGACATTGTTGAAATTCTTGATGACACTCT-GGATTATAAGGTCCAAC 1495
| | | ||| || ||||||||||||||||||||||||| || ||| ||||||||||||
Sbjct 1463 TTTGCTTCTT-ATAACATTGTTGAAATTCTTGATGACAC-CTTGGAGTATAAGGTCCAAT 1520
Query 1496 TGCTGAAGCAACAACCCGTTTC-TGATGATCGTAATGATATGGA-ACATAGGTTGTTTAG 1553
|||||||||| | |||| ||| | | |||| ||| | | ||| | ||| |||||| ||
Sbjct 1521 TGCTGAAGCA-CGACCCCTTTTATAAAGATCATAAA-A-A-GGAGA-ATACGTTGTTAAG 1575
Query 1554 GGCATGT-ACGGAGTATACTTATAAC-GAGGA--TG-AAGGGTCGG-A----A----CCA 1599
|||| || | | || | | | | | | | ||| || ||||||||| | | |||
Sbjct 1576 GGCA-GTTAAGAAG-A-A-TGAGAGCTG-GGAAATGGAAGGGTCGGGATCGTATATACCA 1630
Query 1600 ATATTTACGATCCC-AAA-GTCGGAAAGGATCAGATTCTCGAATAAGATTCCTGCTACGC 1657
| || ||||||||| ||| | ||||||||||||||||||||||||| |||||||| | |
Sbjct 1631 ACATATACGATCCCGAAAAG--GGAAAGGATCAGATTCTCGAATAAGGTTCCTGCTTCAC 1688
Query 1658 GTGTAACGAAAGAGATGTCCGGAGAGTTGGAAGACCTTTTAAGTGTTGAGTT-TAGGGCA 1716
||||||| | |||||||| ||||||| | | || ||| |||||||||| || ||| |||
Sbjct 1689 GTGTAACCATAGAGATGTACGGAGAGCTAGTGGATCTTATAAGTGTTGA-TTCTAGAGCA 1747
> AT5G18710.1 | Symbols: | Domain of unknown function (DUF3444)
| chr5:6241134-6243479 FORWARD LENGTH=1918
Length=1918
Score = 176 bits (95), Expect = 6e-43
Identities = 183/225 (81%), Gaps = 8/225 (4%)
Strand=Plus/Plus
Query 394 TTCAACGACTTTGAAAAGCTGAGGGAAGAAGTAAACTTTGCGGTTGGTCAGACCTGGGCT 453
||||| |||||||| |||||||||||||||||| |||||| ||||| ||||||||||||
Sbjct 475 TTCAATGACTTTGATAAGCTGAGGGAAGAAGTACACTTTGAAGTTGGCCAGACCTGGGCT 534
Query 454 ATTTATGATACAGTGGATGGGATGCCTAGATTGTATGCTCGGATCATAA-AAGTTTCAGC 512
||||||||||||||||||||||||||||||||||||||| ||||| || |||||| |
Sbjct 535 CTTTATGATACAGTGGATGGGATGCCTAGATTGTATGCTCAGATCA-AAGAAGTTTTTGT 593
Query 513 TCCTTGTTTTGGTCTTAG-GATCACATATCTAGAGCCAGATCCAGGTAATGAAAAAGAGA 571
| || ||||| | ||| | |||| | || ||||| |||||| | | || || |
Sbjct 594 TTCTGGTTTTAATGTTACTG-TCACGTGGCTTGAGCCTGATCCATATGACGAGGAACC-A 651
Query 572 A-ACT-ATGGTTTGAAGAAGACTTGCCTGTTTCTGTTGGTAAGTT 614
| || | ||| |||| |||||||||||||||||||||||| |||
Sbjct 652 ATACAGA-GGTATGAAAAAGACTTGCCTGTTTCTGTTGGTAGGTT 695
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87198346665
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5