BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941407
Length=2755
Score E
Sequences producing significant alignments: (Bits) Value
AT5G18750.1 | Symbols: | DNAJ heat shock N-terminal domain-con... 2444 0.0
> AT5G18750.1 | Symbols: | DNAJ heat shock N-terminal domain-containing
protein | chr5:6254620-6257932 FORWARD LENGTH=2904
Length=2904
Score = 2444 bits (1323), Expect = 0.0
Identities = 1468/1539 (95%), Gaps = 6/1539 (0%)
Strand=Plus/Plus
Query 1219 GTAATGCAGCAAAGGATTCAAGTTCAGGGAGTGCATCAGATGCCGAAATTGAGTGTACTG 1278
|||| |||||||| ||||||||||||||||||| |||||||| |||||| |||||||||
Sbjct 1287 GTAAAGCAGCAAAAAATTCAAGTTCAGGGAGTGCGTCAGATGCAGAAATTCAGTGTACTG 1346
Query 1279 ATCCTGATTTCAGTAACTTTGAGAAGTCGAGGGAAGTGACGTGTTTCAAAGCTGGTCAGA 1338
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1347 ATCCTGATTTCAGTAACTTTGAGAAGTCGAGGGAAGTGACCTGTTTCAAAGCTGGTCAGA 1406
Query 1339 CATGGGCAATGTATGATGACATGGGTCGAATGCCTCGATACTATGCCCTCATCAGAAAAG 1398
|||||||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 1407 CATGGGCAATCTATGATGACATGGGTGGAATGCCTCGATACTATGCCATCATCAGAAAAG 1466
Query 1399 TCATAAGGAAACCTAGTTTCATGCTCAAAATACAATGGCTAGAGGCTAG-ACCAGATGAT 1457
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 1467 TCATAAGGAAACCTAGTTTCATGCTCAAAATACAATGGCTAGAGGCT-GAACCAGATGAT 1525
Query 1458 GAGAAAGCAATA-CAGTGGGTTCGTAAAAAATTGCCCATCTCTATTGGTAAGTTCAAACT 1516
|||||||||| | | ||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 1526 GAGAAAGCAA-ACCTGTGGGTTCGTAAAAACTTGCCCATCTCTATTGGCAAGTTCAAACT 1584
Query 1517 TGGTGGAAATTTGAACATAGAGAAAACTCCATGTTTCTCTCATCTGATCTACTCT-AGAG 1575
|||||||||| ||||||||||||||||||||||||||||||| ||||||||| | || |
Sbjct 1585 TGGTGGAAATGAGAACATAGAGAAAACTCCATGTTTCTCTCATATGATCTACTTTAAG-G 1643
Query 1576 TAGGAAGCATGAAGGATACTGTCAGAGTATACCCAAGAATAGGAGAAACATGGGCTCTCT 1635
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1644 TAGGAAGCATGAAGGATACTGTCAGAGTATACCCAAGAATAGGAGAAACATGGGCTCTCT 1703
Query 1636 TCAAGAACTGGGACATCAATTGGTCCTCTGGTCGTCGGCGTTCTTCCCATGAGCATGAGT 1695
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1704 TCAAGAACTGGGACATCAATTGGTCCTCTGGTCGTCGGCGTTCTTCCCATGAGCATGAGT 1763
Query 1696 ATGAGTATGAGTTTGTTGAGATCTTGTCAGAATATGTTGAAGGGGTTGCAATAGAGGTTG 1755
|||||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1764 ATGAGTATGAATTTGTTGAGATCCTGTCAGAATATGTTGAAGGGGTTGCAATACAGGTTG 1823
Query 1756 CGTTCTTGCGTAAACTAAAAGGCTTTGCAAGTGTATTTTGTCGAATTGCACCAGGTGGTG 1815
|||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 1824 CGTTCTTGCGTAAAATAAAAGGCTTTACAAGTGTATTCTGTCGAATTGCACCAGGTGGTG 1883
Query 1816 GATTAGACACAATTCAGATTCCGCCTCATGAGTTGCTTAGATTCTCCCATAGCATCCCCT 1875
||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1884 GATCAGACACAATTCAGATTCCGCCTCATGAGTTGCTTAGATTCTCCCACAGCATCCCCT 1943
Query 1876 CAACCAAATTGACAGGAGAAGAAGGAAATGGCGTTCCCATTGGTTCTTATGAGCTCGATA 1935
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1944 CAACCAAATTGACAGGAAAAGAAGGAAATGGCGTTCCCATTGGTTCTTATGAGTTCGATA 2003
Query 1936 CAGCTGCATTACCACATAAGATTGAAGAAGAAGAAGCCGTTCCTGTATTACGAGAAGCTG 1995
|||||||||||||||| || |||||| |||||||||| || ||||| ||||||||| |||
Sbjct 2004 CAGCTGCATTACCACAGAAAATTGAACAAGAAGAAGCTGTCCCTGTCTTACGAGAATCTG 2063
Query 1996 CCAAGTTGAACCAAGTCCATCATCACTCTCCACCTTCATCGGAGCCAGACTGTATTGTCA 2055
||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 2064 CCAAGTTAAACCAAGTCAATCATAACTCTCCACCTTCATCGGAGCCAGACTGTATCGTCA 2123
Query 2056 TTCCTAATTTCCAGTTTAACAACTTCAGTGCTGAAAGATTAGAGGGAAAGTTTGCACCTG 2115
|||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 2124 TTCCTAATTTCCAGTTCAACAACTTCAGCGCTGAAAGATTGGAGGGAAAGTTTGCACCTG 2183
Query 2116 GTCAGATATGGTCATTGAACAGCAAAGAGGATGGCTTGCCCAAGTGTTACGCTAAGATTC 2175
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2184 GTCAGATATGGTCATTGAACAGCAAAGAGGATGGCTTGCCCAAGTGTTACGCAAAGATTC 2243
Query 2176 AGCAGATAGTATGGAGGCCGGTATTCAAATTGCAGATAAACCGGCTAGAGCCTAAATCAT 2235
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 2244 AGCAGATAGTATGGAGGCCGGTATTCAAGTTGCAGATAAACCGGCTAGAGCCAAAATCAT 2303
Query 2236 TTCTTGAGAACGTTATACAGTGGCATGACAAAAGAATGCCAGTCAGTTGCGGAAATTTCA 2295
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2304 TGCTTGAGAACGTTATACAGTGGCATGACAAAAGAATGCCAGTCAGTTGCGGAAATTTCA 2363
Query 2296 CTTTGAAGGAAAGCCGGGACGAGACACTCACTAACGTGACTGATTTTTCACATCAGATTA 2355
||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2364 CTTTGAAGGAAGGCCGGGACGAGACACTCACTAAAGTGACTGATTTTTCACATCAGATTA 2423
Query 2356 AGGCAGAAAATCATTTCAGGAAAAACGAGTACATTGTCGTCCCCAAGACCGGTGAAATTT 2415
|||||||||| |||||||||| ||||||||||||||| ||||||||||| || |||||||
Sbjct 2424 AGGCAGAAAAGCATTTCAGGATAAACGAGTACATTGTTGTCCCCAAGACTGGCGAAATTT 2483
Query 2416 GGGCATTGTACAAGAACTGGAGTGAAACAATCAAGGCCGCAAGCTTGAAAAAGTGTGAAT 2475
||||| |||||||||||||||||||||||||||||||| |||||||||| | ||||||||
Sbjct 2484 GGGCAATGTACAAGAACTGGAGTGAAACAATCAAGGCCACAAGCTTGAAGAGGTGTGAAT 2543
Query 2476 ATGAGGTTGTTGAAGTTCTTGATGACAATGACAGCCACATCGAGGTTATGCTGTTGGAAC 2535
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2544 ATGAGGTTGTTGAGGTTCTTGATGACAATGACAGTCACATCGAGGTTATGCTGTTGGAAC 2603
Query 2536 GGGTGGATGGGTTTATTTCGGTATTCAAGGAAAAAGTGGAAGGAGGCATCGATGTGAAGA 2595
||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 2604 AGGTTGATGGGTTTATTTCAGTATTCAAGGAAAAATTGGAAGGAGGCATCGATGTGAAGA 2663
Query 2596 AGAAGATCCCAAGGTGTGAATTGTTGAGATTCTCACATTATGTTCCTGCATTCCGCTTAA 2655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2664 AGAAGATCCCAAGGTGTGAATTGTTGAGATTCTCACATTATGTTCCTGCATTCCGCTTAA 2723
Query 2656 CTGGAGAGAGAGATGGAGCTCTTAGAGGCTATGTTGAGCTCGATCCAAGTGCGTTGCCCC 2715
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2724 CTGGAGAGAGAGATGGAGCTCTTAGAGGCTATGTTGAGCTCGATCCAAGTGCGTTTCCCC 2783
Query 2716 GTAACTTGCGCAGATCTTAGACTAATTCTTGTAGGGAGG 2754
|||||||||||| |||||||||||||||||||||||||
Sbjct 2784 TTAACTTGCGCAGGTCTTAGACTAATTCTTGTAGGGAGG 2822
Score = 1559 bits (844), Expect = 0.0
Identities = 1079/1188 (91%), Gaps = 33/1188 (3%)
Strand=Plus/Plus
Query 1 ATCTGGGAGA-TTTTATTAGTATGAGCAACAAAGATGAGGCTCTACGAGCCAAAGAGTTA 59
|||||||| | ||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 129 ATCTGGGATATTTTTA-AAGTATGAGCAACAAAGATGAGGCTCTACGAGCCAAAGATTTA 187
Query 60 GCAGAAGATTGGATGAGCAAGTCAGATTTCACAACTGCTCGTAGAATTGCTTTAAAGGCT 119
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 188 GCAGAAGATTGGATGAGCAAGTCAGATTTCACAACTGCTCGTAGAATTGCGATAAAGGCT 247
Query 120 CAGAAAATGGATGCAAGTCTGGAGAATGCTGTTGCTCGCATGATTATGGTGTGTGATGTG 179
|||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||
Sbjct 248 CAGAAAATGGATGCAACTCTGGAGAGTGTTGTTGCTCGCATGATTATGGTGTGTGATGTG 307
Query 180 CATTGTGCAGCATTGGAGAAATCTGGGGATGAGACTGATTGGTACAAGATTCTCCAAGTA 239
|||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 308 CATTGTGCAGCATTGGAGAAATCTGGTGATGAGACTGATTGGTACAAGATTCTTCAAGTG 367
Query 240 GAGCAAAATGCAGATGAAAATATCATTAAGAAACAGTATAGGAAGCTTGCCCTTCATCTT 299
||||||| |||||||||||||| ||||||||||||||||| ||||||||| |||||||||
Sbjct 368 GAGCAAACTGCAGATGAAAATACCATTAAGAAACAGTATAAGAAGCTTGCTCTTCATCTT 427
Query 300 CATCCTGACAAAAACAAACTCCCTGGTGCTGAATCTGCTTTCAAAACCATTGGTGAAGCT 359
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 428 CATCCGGACAAAAACAAACTCCCTGGTGCTGAATCTGCTTTCAAAACTATTGGTGAAGCT 487
Query 360 CAGAGGATTCTTTTGGACAAAGATAAAAGGAGGTTTCATGACATGAGACGGAAACCCGTT 419
|||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||| ||
Sbjct 488 CAGAGGGTTCTTTTGGACAAGGATAAAAGGAGGTTTCATGACATGAGACGAAAACCTGTC 547
Query 420 TTTAGGCGGCCTGCACCAGCACCAGCACCAGCAACGTCATTTC-A--ACCCCAACAAGCC 476
||||| |||||||||||||||||||||||||| | ||||||| | |||||||||||||
Sbjct 548 TTTAGAAGGCCTGCACCAGCACCAGCACCAGCACCATCATTTCAACCACCCCAACAAGCC 607
Query 477 CCGACCACGCCTTTTTTCACTCAGCGTGTTTTCCAGACAAACGATAATGCGGAAAGGAAG 536
|||||||| ||||||||||||||||||| |||||||||||| | ||||| || |||||||
Sbjct 608 CCGACCACACCTTTTTTCACTCAGCGTGGTTTCCAGACAAATGTTAATGTGGCAAGGAAG 667
Query 537 AGACCTGAAAACCAGAAGAAACCTCAAGTTCAACCAACTGGGTCTGGTGGTGGCTCCAGG 596
|||||||||||||||||||||||||||| |||||||||||||| || |||| | ||||
Sbjct 668 AGACCTGAAAACCAGAAGAAACCTCAAGCTCAACCAACTGGGTTTGATGGTCTCGCCAGC 727
Query 597 TTT-TGTACCTCGTGCCCTTTTTGTCGCAAGATGTATGAATATCAAAGGGGATTAATCAA 655
||| | ||||| ||| | ||||||| || || |||||||||||||||| |||||||||
Sbjct 728 TTTACG-ACCTCATGCGCATTTTGTCACAGGAAGTATGAATATCAAAGGAAATTAATCAA 786
Query 656 CACAC-GAATGAATTGTTTGAGTTGCGGTAAGCAATACATTGCTTTTCAAGAAAACTTTG 714
||||| | |||| |||||||| |||||||||||||||| |||||||||||| |||||||
Sbjct 787 CACACTG-ATGACTTGTTTGAATTGCGGTAAGCAATACGTTGCTTTTCAAG-AAACTTT- 843
Query 715 AGGGTCCACCAGTTCAGGCGACTTTCCCCTTCTTCCAACAAAGTAAGGTTCCAACACAAG 774
|||||||||||| |||||||| ||||||||||||| || |||||||| |||||||
Sbjct 844 -CCAACCACCAGTTCAGCCGACTTTCTCCTTCTTCCAACAGAGCAAGGTTCCTACACAAG 902
Query 775 AGGCAGGCAAGGCAGTGGAGAAGCAGCC-GCAAAGTTCTGCTAAAAGTTCCTTAAGTAAA 833
|||||||||||||||||||||||||||| | |||||| ||||||||||| || ||||||
Sbjct 903 AGGCAGGCAAGGCAGTGGAGAAGCAGCCAG-AAAGTTGTGCTAAAAGTTTTTTTAGTAAA 961
Query 834 GAGGGTTCTAGAGCCAAAAGCTCTGGTGTTTCGGCTGAGAACATCAATGGAAAGAGAAAG 893
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 962 GAGGGTTCTAGAGCAAAAAGCTCTGGTGTTTCTGCTGAGAACATCAATGGAAAGAGAAAG 1021
Query 894 AGGAAGAAGGTAGTTGAATCCAGTGACAGCTCTTGCAGCGAGAGCAGTATTGAGTGCAAA 953
||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1022 AGGAAGAAGGTCGTTGAATCCAGTGACAGCTCTTGCAGCGAGAGCAGTATTGACTGCAAT 1081
Query 954 GAAGTTCCAGCTGGTGGACAAGATTCGGGGTCCAGCGGTGCACAGCATTCTCGGAGGTCA 1013
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1082 GAAGTTCCAGCTGGTGGACAAGATTCGGGGTCCAGCGGTGCACAGCATTCTCGGAGGTCT 1141
Query 1014 GTCCGTAGCAAGCAGCAGGTTTCATATAAAGAGAATAAGAGCGATGATGACAATAAAGAA 1073
||||||||||||||||||||||||||||||||| || | | | | |||
Sbjct 1142 GTCCGTAGCAAGCAGCAGGTTTCATATAAAGAG-----GA----T-A--A-A-----GAA 1183
Query 1074 GAGGATGCAGAAAGTGCTGAGGAGTCTGATTTTAGAAAGAAGTCACATGAGGGTCAACTG 1133
|||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |
Sbjct 1184 GAGGATGCAGAAAGTGCTGAGGAGTCTGATTTCAGAAAGAAGTCACATGAGGATCAACCG 1243
Query 1134 TTTGCAGAAACCTTGCCAAATGGTATAAACAGGACGAAGAAGA-TAAA 1180
||| |||||||||||||||||||| |||||||||| ||||||| ||||
Sbjct 1244 TTTACAGAAACCTTGCCAAATGGTTTAAACAGGACAAAGAAGAGTAAA 1291
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 136855420504
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5