BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941408
Length=1279
Score E
Sequences producing significant alignments: (Bits) Value
AT5G18760.1 | Symbols: | RING/U-box superfamily protein | chr5... 1893 0.0
AT3G06330.1 | Symbols: | RING/U-box superfamily protein | chr3... 436 2e-121
> AT5G18760.1 | Symbols: | RING/U-box superfamily protein | chr5:6258295-6260929
REVERSE LENGTH=1550
Length=1550
Score = 1893 bits (1025), Expect = 0.0
Identities = 1167/1234 (95%), Gaps = 15/1234 (1%)
Strand=Plus/Plus
Query 39 AGAAATTTTGTTCTCGCTAAAGAttcttcatcttcttcttcttcttcttctactcctcct 98
||||||||||||||||||||||| | |||||| || |||||||||| | || |
Sbjct 132 AGAAATTTTGTTCTCGCTAAAGA----T--TCTTCTACTGGTTCTTCTTCT--T-CT--T 180
Query 99 acttgttcttcttctCAGGTTAAAGAACAATCTGTTGAAGATGAATCCAGATCTCAGCCA 158
| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 181 -C---TTCTTCTTCTCAGGTTAAAGAACAATCTGTTGAAGATGTATCCAGATCTCAGCCA 236
Query 159 AGTGGAAGCCAATTGGATGTTTCTATCCAAATACCACCAAAACCAATGCCCAGTTTAGGA 218
|||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||
Sbjct 237 AGTGGAAGCCAATTGGATGTTTCTATCCAAATACCACCAAAACCGACGCCTAGTTTAGGA 296
Query 219 ATCTTGCGAAATTTGAGTCTGAAAAGGAAAGCTTCTCTACCAAACTATGAGAGAAGATTG 278
|| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 ATTTTGAGAAATCTGAGTCTGAAAAGGAAAGCTTCTCTACCAAACTATGAGAGAAGATTG 356
Query 279 CTACTAAGTCCCACTGTTTCAGAAACCAGTGAAAGGCCTCTTGTTGCAAGTCCGATCACA 338
||||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 357 CTACTAAGTCCTAGTGTTTCAGAAACCAGTGAAAAGCCTCTTGTTGCAAGTCCGATCACA 416
Query 339 TCGCCATACTGGAAGAGATGTTTGTCACTTCCTTCTACTAATGCTGCTAAACTGTCTCTG 398
||||| |||||||| || ||||||||||||||||||| |||| |||||||||||||||||
Sbjct 417 TCGCCTTACTGGAAAAGGTGTTTGTCACTTCCTTCTAGTAATTCTGCTAAACTGTCTCTG 476
Query 399 GTTGTCTCTACACCGCCTGTTTCAGCTGTGGTGCATAGTGAACAGCCTAAGTCTAATAAA 458
||||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 477 GTTGTATCTACAACGCCTGTTTCCGCTGTGGTGCATAGTGAACAGCCTAAGTCTAATAAA 536
Query 459 AATGGTGTTCATGCATCAGTTTCAAGATCCTTGTCCATGAACAGAGTGATTGTACGAGCT 518
||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 GATGGTCTTCATGCATCTGTTTCAAGATCCTTGTCCATGAACAGAGTGATTGTACGAGCT 596
Query 519 GTCTCTTTTGACGACAACAAAAATCACATTTCTAACGAAGCAAATGGCGATCAAATCACC 578
|||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 597 GTCTCTTTTGACGACAACAAAAATCACATTTCAAATGAAGCAAATGGCGATCAAATCACT 656
Query 579 CCGGTTCCTGCagaagaaacagaagaagaaatccctgaagaagaagCAGTATGCAGGATT 638
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 657 CCAGTTCCTGCAGAAGAAACAGAAGAAGAAATTCCTGAAGAAGAAGCAGTATGCAGGATT 716
Query 639 TGTCTTGATGTGTGCGAAGAAGGTAACACACTGAAAATGGAATGCAGTTGCAAAGGTGAC 698
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 TGTCTTGATGTGTGCGAAGAAGGTAACACACTGAAAATGGAATGCAGTTGCAAAGGTGAC 776
Query 699 CTCAGACTCGTTCACGAGCATTGTGCCATTAAGTGGTTTAGTACAAAGGGAACGCGAATC 758
|||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 777 CTCAGACTTGTTCACGAGCATTGTGCCATTAAGTGGTTTAGTACAAAAGGAACACGAATC 836
Query 759 TGCGATGTTTGCAGACAAGAAGTCCGGAACTTACCAGTGATACTGCTCCGTGTCCCAACA 818
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 837 TGCGATGTATGCAGACAAGAAGTCCGGAACTTACCAGTGATACTCCTCCGTGTCCCAACA 896
Query 819 ATTAATCAACTTACCAATAGACGGGAACTCACTCAGCAGAGTTCACAGCCACAAACCATT 878
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 897 ATTAATCAACTTACCAATAGACGGGAACTCACTCAGCAGAGTTCAGAGCCACAAAGCATC 956
Query 879 AGTGTAGGGCAAGAGTTTGTAGTGCTTGTACTCATCAGCACCGTCTGCTACTTCTTCTTC 938
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 AGTGTTGGGCAAGAGTTTGTAGTGCTTGTACTCATCAGCACCGTCTGCTACTTCTTCTTC 1016
Query 939 CTTGAACATTTACTGATTCGTGACTTGAATTCACAGGCAATCTTTGTCGCAGCGCCATTT 998
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1017 CTTGAACATTTACTGATTCGTGACTTGAATTCACAGGCAATATTTGTTGCAGCGCCATTT 1076
Query 999 TCATTCACCCTAGCTCTCTTGGCCTCAACTTTCGCCGTCATCCTCGCGATCAGAGAATAC 1058
||||||||||| || ||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 1077 TCATTCACCCTTGCACTCTTAGCCTCAACTTTTGCCGTCATCCTCGCGATCAGAGAATAC 1136
Query 1059 ATATGGACATACGCAGCTCTTGAGTTTGCACTAGTGGCATTGCTTGTTCATCTGTTATAT 1118
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1137 ATATGGACATACGCAGCTCTTGAGTTTGCACTAGTGGCATTGCTTGTTCATCTATTATAT 1196
Query 1119 GCTACACTTGGTGTGCCGGTTATCTATGCAATGCTTTTCGCGGGGATTCTGGGTTTCGGG 1178
||||||||| |||||||||||||||||||||||||||| || ||||| ||||||||||||
Sbjct 1197 GCTACACTTCGTGTGCCGGTTATCTATGCAATGCTTTTTGCAGGGATACTGGGTTTCGGG 1256
Query 1179 ATGGCAATGTGCTTAAACTTGTTGTGCATTTGTTATTCCTCTCGGCCTGTGCGATTTCCG 1238
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1257 ATGGCAATGTGCTTAAACTTGTTGTGCATTTGTTATTCCTCTCGGCCTGTGCGGTTTCCG 1316
Query 1239 CAGAATACAAACTTAGTATAAAGAAAGTCTCTTC 1272
| |||||||||||||||||||||| |||||||||
Sbjct 1317 CGGAATACAAACTTAGTATAAAGATAGTCTCTTC 1350
> AT3G06330.1 | Symbols: | RING/U-box superfamily protein | chr3:1917240-1919925
FORWARD LENGTH=1591
Length=1591
Score = 436 bits (236), Expect = 2e-121
Identities = 580/745 (78%), Gaps = 28/745 (4%)
Strand=Plus/Plus
Query 498 AACAGAGTGATTGTACGAGCTGTCTCTTTTGACGACAACAAAAATCACATTTCTAACGAA 557
|||| ||| ||||| ||| | | ||||||||| || ||||| | |||| | |||
Sbjct 614 AACAAAGTTATTGTGCGATCCATATCTTTTGACAACCACAAAGCCCGTGTTTCCAGTGAA 673
Query 558 GCAAATGGC-GATCAAATCAC-CCCGGTTCCTGCagaagaaacagaagaagaaa-tccct 614
||| | || |||||| || | || |||||| | |||||||| || ||||||| ||||
Sbjct 674 ACAAGT-GCAGATCAAGTCTCTTCC-GTTCCTCCTGAAGAAACTGATGAAGAAATTCCC- 730
Query 615 gaagaagaagCAGTATGCAGGATTTGTCTTGATGTGTGCGAAGAAGGTAACACACTGAAA 674
||||||||||| || |||||||| ||||| || |||||||||||||| || || |||||
Sbjct 731 GAAGAAGAAGCCGTGTGCAGGATCTGTCTGGACGTGTGCGAAGAAGGAAATACTTTGAAA 790
Query 675 ATGGAATGCAGTTGCAAAGGTGACCTCAGACTCGTTCACG-AGCATTGTGCCATTAAGTG 733
||||||||||| ||||||||||| |||||||| ||||| | ||| |||||| || || ||
Sbjct 791 ATGGAATGCAGCTGCAAAGGTGATCTCAGACTTGTTCATGAAGC-TTGTGCAATGAAATG 849
Query 734 GTTTAGTACAAAGGGAACGCGAATCTGCGATGTTTGCAGACAAGAAGTCCGGAACTTACC 793
|||||||||||||||||| ||| ||| || || || ||||||| ||| | |||||||||
Sbjct 850 GTTTAGTACAAAGGGAACAAGAACCTGTGACGTCTGTAGACAAGTAGTACAGAACTTACC 909
Query 794 AGTGATACTGCTCCGTGT-CCCAACAATTAATCAACTTACCAATAGACG-GGAACTCACT 851
||| | | || | ||||| ||| ||| |||||||| | ||| ||||| || | || |
Sbjct 910 AGTTACATTGGTTCGTGTGCCC-ACACCTAATCAACAAAACAACAGACGTGGTA-GCAGT 967
Query 852 CAGCAGAGT-TCACAGCCACAAACCATTAGTG-TAGGGCAAGAGTTTGTAGTGCTTGTAC 909
|| |||| | | | | |||||||| |||||| | ||||||||||||| ||||| || |
Sbjct 968 CAACAGAATAT-GCCGTCACAAACCGTTAGTGCT-TGGCAAGAGTTTGTGGTGCTAGTTC 1025
Query 910 TCATCAGCACCGTCTGCTACTTCTTCTTCCTTGAACATTTACTGATTCGTGACTTGAATT 969
| |||||||| |||||||||||||||||||| || || ||||||||||||||||||||
Sbjct 1026 TAATCAGCACAGTCTGCTACTTCTTCTTCCTCGAGCAATTACTGATTCGTGACTTGAACA 1085
Query 970 CACAGGCAATCTT-TGTCGCAGCGCCATTTTCA-TTCACCCTA-GCTCTCTTGGCCTCAA 1026
||| || || || ||||||| ||||||||| || || || || ||||| || || |
Sbjct 1086 AACAAGCTAT-TTACATCGCAGCACCATTTTCACTT-ACGTTAGGC-CTCTTAGCATCCA 1142
Query 1027 CTTTCGCCGTCATCCTCGCGATCAGAGAATACATATGGACATACGCAGCTCTTGAGTTTG 1086
||| ||| | | ||||| ||||||||||||||||||||||||||||| || |||||||
Sbjct 1143 TTTTTGCCATTGTTCTCGCTATCAGAGAATACATATGGACATACGCAGCACTCGAGTTTG 1202
Query 1087 CACTAGTGG-CATTGCTTG-TTCATCTGTTATATGCTACACTTGGTGTGCCGGTTATCTA 1144
| || |||| ||| | ||| ||||| | || ||||||||| || | | ||| | |||
Sbjct 1203 CGCTTGTGGGCAT-G-TTGGTTCATATATTCTATGCTACAGTTAGACTATCGGCGACCTA 1260
Query 1145 TGCAATGCT-TTTCGCGGGGATTCTGGGTTTCGGGATGGCAATGTGCTTAAACTTGTTGT 1203
| | || || ||| || |||||||| ||||| ||||| || ||||| |||||| |||||
Sbjct 1261 TTCTATACTCTTT-GCAGGGATTCTTGGTTTTGGGATAGCCGTGTGCCTAAACTCGTTGT 1319
Query 1204 GCATTTGTTATTCCTCTCGGCCTGT 1228
| || ||||| | || ||| |||
Sbjct 1320 ACCTTCATTATTTCGCTTGGCGTGT 1344
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62901282885
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5