BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941410
Length=219
Score E
Sequences producing significant alignments: (Bits) Value
AT5G18790.1 | Symbols: | Ribosomal protein L33 family protein ... 337 3e-92
AT3G06320.1 | Symbols: | Ribosomal protein L33 family protein ... 276 7e-74
> AT5G18790.1 | Symbols: | Ribosomal protein L33 family protein
| chr5:6266092-6266907 REVERSE LENGTH=462
Length=462
Score = 337 bits (182), Expect = 3e-92
Identities = 191/195 (98%), Gaps = 1/195 (1%)
Strand=Plus/Plus
Query 8 GTCAAGGTGAGAAAATGGGGGACAAGAGGAAGAAGACGTTCATGTTCATCCGTCTTGTTT 67
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 41 GTCAA-GTGAGAAAATGGGGGACAAGAGGAAGAAGACGTTCATGTTCATCCGTCTTGTCT 99
Query 68 CAGCTGCTGGAACTGGATTCTTCTATGTCAAGAGGAAGAGTACCAAGGGCCTTCTTGAGA 127
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 100 CAGCTGCTGGAACTGGTTTCTTCTATGTCAAGAGGAAGAGTACCAAGGGACTTCTTGAGA 159
Query 128 AGCTCGAGTTCCGTAAGTACGATCCTCGAGTCAACCGTCATGTCCTCTTCACTGAGCAGA 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 160 AGCTCGAGTTCCGTAAGTACGATCCTCGAGTCAACCGTCATGTCCTCTTCACTGAGCAGA 219
Query 188 AGATGAAGTGACGGA 202
|||||||||||||||
Sbjct 220 AGATGAAGTGACGGA 234
> AT3G06320.1 | Symbols: | Ribosomal protein L33 family protein
| chr3:1914511-1915318 FORWARD LENGTH=442
Length=442
Score = 276 bits (149), Expect = 7e-74
Identities = 169/179 (94%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 20 AAATGGGGGACAAGAGGAAGAAGACGTTCATGTTCATCCGTCTTGTTTCAGCTGCTGGAA 79
||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 62 AAATGGGAGACAAGAGGAAGAAGACGTTCATGTTCATCCGTCTAGTTTCAGCAGCTGGAA 121
Query 80 CTGGATTCTTCTATGTCAAGAGGAAGAGTACCAAGGGCCTTCTTGAGAAGCTCGAGTTCC 139
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 122 CTGGATTCTTCTATGTCAAGAGGAAGAGTACCAAGGGACTTCTTGAGAAGCTCGAGTTCC 181
Query 140 GTAAGTACGATCCTCGAGTCAACCGTCATGTCCTCTTCACTGAGCAGAAGATGAAGTGA 198
||||||||||||||||||| || || ||||||||||| || |||||||| |||||||||
Sbjct 182 GTAAGTACGATCCTCGAGTTAATCGCCATGTCCTCTTTACAGAGCAGAAAATGAAGTGA 240
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9802211055
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5