BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941415
Length=2476
Score E
Sequences producing significant alignments: (Bits) Value
AT5G18830.3 | Symbols: SPL7 | squamosa promoter binding protein... 3727 0.0
> AT5G18830.3 | Symbols: SPL7 | squamosa promoter binding protein-like
7 | chr5:6275990-6280567 FORWARD LENGTH=2788
Length=2788
Score = 3727 bits (2018), Expect = 0.0
Identities = 2307/2441 (95%), Gaps = 42/2441 (2%)
Strand=Plus/Plus
Query 9 AATTGAAAGA--CTCAGATGTCTTCTCTGTCGCAATCGCCAACC-CCGCCGGAGATGGAT 65
||||| |||| |||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 111 AATTG-AAGACTCTCAGATGTCTTCTCTGTCGCAATCGCC-ACCACCGCCGGAGATGGAT 168
Query 66 ATCCAACCGCCGGCATTGGTTAACGATGATCCTTCCACTTATTCCTCCGCTTTGTGGGAT 125
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 169 ATCCAACCCCCGGCATTGGTTAACGATGATCCTTCCACTTATTCCTCCGCTTTATGGGAT 228
Query 126 TGGGGAGATCTCCTTGACTTCGCCGCAGACGAACGCCTTCTCTCTTTAGACTCCGATCAA 185
||||||||||||||||||||||||||||||||||||| | |||| | | |||||||
Sbjct 229 TGGGGAGATCTCCTTGACTTCGCCGCAGACGAACGCC-T-TCTC----G--T-CGATCAA 279
Query 186 ACTCCTTTCCCTCCCGTTCCT-TCTCCTCCTCTTCCGCCGCTGATTCCGACGCAAACTCC 244
| || ||||||||||||| || ||||||||||| ||||| ||||||||||||||||||||
Sbjct 280 ATTCATTTCCCTCCCGTT-CTCTCTCCTCCTCTACCGCCTCTGATTCCGACGCAAACTCC 338
Query 245 GGCGGAATCTGAATT-GTATCCTTCTCCGGAAGAATCGGGTTCTGGTTCGGATCGGGTTA 303
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 339 GGCGGAATCTGAATTAG-ATCCTTCTCCGGAAGAATCGGGTTCTGGTTCGGATCGGGTTA 397
Query 304 GGAAGCGGGACCCGAGATTGATTTGTTCCAATTTCATTGAAGGTATGCTTCCGTGTTCTT 363
||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 398 GGAAGCGAGACCCGAGGTTGATTTGTTCCAATTTCATTGAAGGTATGCTTCCTTGTTCGT 457
Query 364 GTCCTGAGCTTGATCAGAAATTGGAGGACGCTGAGCTTCCGAAGAAGAAACGGGTTCGCG 423
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 458 GTCCTGAGCTTGATCAGAAATTGGAAGACGCCGAGCTTCCGAAGAAGAAACGGGTTCGCG 517
Query 424 GCGGGTCGGGGGTGGCTCGATGTCAGGTTCCGGATTGTGAAGCGGATATTAGCGAGCTCA 483
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 518 GCGGGTCGGGCGTGGCTCGATGTCAGGTTCCGGATTGTGAAGCGGATATTAGCGAGCTCA 577
Query 484 AAGGGTACCATAAGAGGCATAGGGTTTGTCTCCGGTGTGCTAACGCCAGCTCCGTTGTCC 543
|||||||||||||||||||||||||||||||||| || |||| |||||||| ||||| |
Sbjct 578 AAGGGTACCATAAGAGGCATAGGGTTTGTCTCCGTTGCGCTACCGCCAGCTTTGTTGTGC 637
Query 544 TTGATGGAGAGAATAAGAGATACTGTCAACAGTGTGGAAAGTTTCATGTT-CTCCCGGAC 602
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 638 TTGATGGAGAGAATAAGAGATACTGTCAACAGTGTGGAAAGTTTCAT-TTGCTCCCGGAC 696
Query 603 TTTGATGAGGGAAAACGCAGCTGTCGGAGAAAGCTAGAGCGTCACAACAACAGACGGAAA 662
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 697 TTTGATGAAGGAAAACGCAGCTGTCGGAGAAAGCTAGAGCGTCACAACAACAGACGGAAA 756
Query 663 AGGAAACCTGTAGATAAAGGAGGCGTTGCTGCAAAACAACAGCAAGTGCTATCTCAGAAT 722
||||||||||||||||||||||| ||||||||| |||||||||||||||| || ||||||
Sbjct 757 AGGAAACCTGTAGATAAAGGAGGTGTTGCTGCAGAACAACAGCAAGTGCTTTCACAGAAT 816
Query 723 GATAACAGCGTCATTGATGTTGAGGATGGAAAAGATAAT-ACATGCTCTAGTGACCAGAG 781
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 817 GATAACAGCGTCATTGATGTTGAGGATGGAAAAGAT-ATCACATGCTCTAGTGACCAGAG 875
Query 782 AGCAGAACAAGAGCCTTCACTGATTTTTGAAGATCGGCATATTCCCACTCAGGGTTCTGT 841
||| ||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 876 AGCTGAAGAAGAGCCTTCATTGATTTTTGAAGATCGGCATATTACCACTCAGGGTTCTGT 935
Query 842 ACCTTTTACCCAAAGCATCAACGCAGACAACTTTGTCTCTGTTACAGGTTCAGGTGAAGC 901
||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 936 ACCTTTTACCCGAAGCATCAACGCAGACAACTTTGTCTCTGTTACAGGTTCGGGTGAAGC 995
Query 902 TCAACCAGATGAAGGAATGAATGACACAAAATTTGAACGTTCACCTTCCAATGGCGACAA 961
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 996 TCAACCAGATGAAGGAATGAATGACACAAAATTTGAACGTTCACCTTCTAATGGCGACAA 1055
Query 962 CAAAAGTGCTTACTCAACTGTTTGCCCAACTGGTCGGATCTCTTTCAAGCTCTACGATTG 1021
||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||
Sbjct 1056 CAAAAGTGCTTACTCAACTGTGTGTCCAACTGGTCGGATCTCTTTTAAGCTCTACGATTG 1115
Query 1022 GAATCCAGCGGAGTTCCCACGGAGACTACGTCATCAAATATTCCAATGGTTGGCCAACAT 1081
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1116 GAATCCAGCGGAGTTCCCACGGAGACTACGTCATCAAATATTTCAATGGTTGGCCAACAT 1175
Query 1082 GCCTGTTGAGCTGGAGGGCTATATCCGTCCTGGATGTACAATTTTGACAGTCTTTATAGC 1141
||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||
Sbjct 1176 GCCTGTTGAGCTGGAGGGCTATATCCGCCCAGGATGTACAATTTTGACTGTCTTTATAGC 1235
Query 1142 AATGCCAGAGATTATGTGGGCGAAGTTGTCTAAAGATCCTGTGGCATATCTGGATGAATT 1201
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1236 AATGCCAGAGATTATGTGGGCGAAGTTATCTAAAGATCCTGTGGCATATCTGGATGAATT 1295
Query 1202 TATTCTTAAACCTGGAAAGATGCTATTTGGAAGAGGCTCGATGACAGTCTATTTGAACAA 1261
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 1296 TATTCTTAAACCTGGAAAGATGCTGTTTGGAAGAGGCTCGATGACTGTCTATTTGAACAA 1355
Query 1262 CATGATTTTCCGTCTTATTAAAGGTGGAACAACTTTAAAGAGAGTCGATGTAAAATTAGA 1321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1356 CATGATTTTCCGTCTTATTAAAGGTGGAACAACTTTAAAGAGAGTCGATGTAAAATTAGA 1415
Query 1322 GTCGCCAAAACTTCAGTTTGTGTATCCTACATGTTTTGAAGCTGGAAAACCAATTGAACT 1381
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1416 GTCGCCGAAACTTCAGTTTGTGTATCCTACATGTTTTGAAGCTGGAAAACCAATTGAACT 1475
Query 1382 CGTTGTTTGTGGACAAAACCTTCTGCAACCCAAATGCCGGTTTCTCGTGTCTTTTTCTGG 1441
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1476 CGTTGTATGTGGACAAAACCTTCTGCAACCTAAATGCCGGTTTCTCGTGTCTTTTTCTGG 1535
Query 1442 GAAGTACTTACCACATAACTATTCTGTTGTTCCTGCACCGGACCAGGATGGGAAGCGTTC 1501
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1536 GAAGTACTTGCCACATAACTATTCTGTTGTACCTGCACCGGACCAGGATGGGAAGCGTTC 1595
Query 1502 TTGTATTAACAAGTTCTATAAGATCAATATTGTGAATTCTGACCCAAATCTCTTTGGCCC 1561
||||| |||||||||||| |||||||||||||||||||||||||| | ||||||||||||
Sbjct 1596 TTGTAATAACAAGTTCTACAAGATCAATATTGTGAATTCTGACCCTAGTCTCTTTGGCCC 1655
Query 1562 TGCCTTTGTCGAGGTTGAAAATGAATCTGGTCTATCAAATTTCATACCTCTAATTATTGG 1621
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1656 TGCCTTTGTCGAGGTTGAAAATGAATCTGGCCTATCAAATTTCATACCTCTAATTATTGG 1715
Query 1622 AGATGAAGCTATATGTTCAGAAATGAAACTAATAGAGCAGAAGTTCAATGCTACACTCTT 1681
||||| |||| | ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1716 AGATGCAGCTGTTTGTTCCGAAATGAAACTAATAGAGCAGAAGTTCAATGCTACACTCTT 1775
Query 1682 TCCAGAAGAACAAGGAGTTACCGCTTGCTCTTCTTTGACTTGCTGTTGCAGGGATTTTGG 1741
|||||| | ||||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1776 TCCAGAGGGACAAGAAGTTACTGCTTGCTCTTCTTTGACTTGCTGTTGCAGGGATTTTGG 1835
Query 1742 GGAGAGACAGAGCACCTTTAGTGGCCTCTTGTTAGATATCGCATGGTCAGTGAAGGTGCC 1801
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||
Sbjct 1836 GGAGAGACAGAGCACCTTTAGTGGCCTCTTGTTAGATATTGCATGGTCGGTGAAGGTACC 1895
Query 1802 CTCTGCAGAACGCACTGAGCAACCTGTGAACCGATGTCAGATAAAAAGATACAACAGAGT 1861
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1896 CTCTGCAGAACGCACTGAGCAACCTGTGAACCGATGTCAGATAAAAAGATACAACAGAGT 1955
Query 1862 GTTGAATTATCTGATACAGAATAACTCAGCGTCAATCTTAGGAAGCGTACTGCACAATCT 1921
||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |
Sbjct 1956 GTTGAATTATCTGATACAGAATAACTCAGCGTCGATCTTAGGAAACGTACTGCACAATTT 2015
Query 1922 GGAAACTTTGGTGaaaaaaaTGGAGCCAGACAGCCTAATTCATTGTACCTGTGACTGCGA 1981
||||||||||||||| ||||||||||||||||| || |||| |||||||||||||||||
Sbjct 2016 GGAAACTTTGGTGAAGAAAATGGAGCCAGACAGTCTTGTTCACTGTACCTGTGACTGCGA 2075
Query 1982 TGTGAGGCTTCTACATGAAAATATGGATTTGGCTAGTGACCTTCACATAAGGCATCAAAG 2041
|||||||||||||||||||||||||||||||| ||||| |||||| || |||||||||
Sbjct 2076 CGTGAGGCTTCTACATGAAAATATGGATTTGGCGAGTGATATTCACAGAAAGCATCAAAG 2135
Query 2042 CCATAAAGAGTCAAAGGTGAATCCAGGGAATGTTCTTCCTTCTTCAGGTTGCTGTTGTGT 2101
|| || |||||||||||||||||| | | | ||| |||||||||||||||||
Sbjct 2136 CCCTATAGAGTCAAAGGTGAATCC------T---C--C-TTCGTCAGGTTGCTGTTGTGT 2183
Query 2102 GAGTAGTTTCCAAAAGGACATACCATCAAGAATATTAAACTTCAATCAGGATCCTGAAGC 2161
||||||| | | ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2184 GAGTAGT--C-AGAAGGACATACCATCAAGAATATTAAACTTCAATAAGGATCCTGAAGC 2240
Query 2162 AGGATTAGATTGTAAAGAGAGAATACAGGCGGACTGTTCACCAGATAGTGGCGGAAAAGA 2221
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 2241 AGGATTAGATTGTAAAGAGAGAATACAGGCAGACTGTTCACCAGATAGCGGCGGAAAAGA 2300
Query 2222 GACTGATCCTCT-TATAAACAAAGAGGTTGTCATGAACGTAAATGACATAGGAGACTGGC 2280
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2301 GACTGATCCTCTGT-TAAACAAAGAGGTTGTCATGAACGTAAATGACATAGGAGACTGGC 2359
Query 2281 CAAGGAAGAAGTCCTGTATAACAACACACTCAGCTCTAACATTCAGGTCCCGTCAAACCG 2340
|||||||| || ||||||| ||| ||||||||| || |||||||||||||||||||
Sbjct 2360 CAAGGAAG---TCGTGTATAAAAACGCACTCAGCTTTAGCATTCAGGTCCCGTCAAACTA 2416
Query 2341 TGTTCTTAATCGCTACGTTTGCTGTCTGTTTTGCGGTCTGTGCGGTTCTCTACCATCCAA 2400
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 2417 TGTTCTTAATCGCTACGTTCGCTGTCTGTTTTGCTGTCTGTGCGGTTCTCTACCATCCAA 2476
Query 2401 ACAAGGTCACACAGCTTGCAGTGGCAATCCGAATGAGATTG 2441
|||||||||||||||||||||||||||||||||||||||||
Sbjct 2477 ACAAGGTCACACAGCTTGCAGTGGCAATCCGAATGAGATTG 2517
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 122858843407
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5