BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941423
Length=1590
Score E
Sequences producing significant alignments: (Bits) Value
AT5G18910.1 | Symbols: | Protein kinase superfamily protein | ... 2571 0.0
AT5G35960.1 | Symbols: | Protein kinase family protein | chr5:... 209 6e-53
> AT5G18910.1 | Symbols: | Protein kinase superfamily protein
| chr5:6306828-6309419 REVERSE LENGTH=1725
Length=1725
Score = 2571 bits (1392), Expect = 0.0
Identities = 1528/1593 (96%), Gaps = 12/1593 (1%)
Strand=Plus/Plus
Query 1 TCTCATTTTTTGTCTTCAATCCATGGAAGGCCTTCGAGACTCATCCTCACAAACTCTCTC 60
|||||||| |||||| ||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 2 TCTCATTTCTTGTCTCCAATCCATGGAAGGCCTTCGAGACTCATCGTCACAAACTATCTC 61
Query 61 TTCCACGACGTCGTCTTCTTCGTCTCCCTCCTGCGATGTAGACGTTGAGAATCGTGGaaa 120
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 62 TTCCACGACGTCGTCTTCTTCGTCTCCGTCCTGCGATGTAGACGTTGACAATCGTGGAAA 121
Query 121 aaaaTTAACTCCTCCATCTACAAGAAGATCTCGAGCCGGTTTCTCTGATTCTTTCTCTTC 180
| ||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 122 ACAATTAACTCCT---TCTACAAGACGATCTCGAGCCGGCTTCTCTGATTCTTTCTCTTC 178
Query 181 TCATGATTTATCATCATTCTGTCGAGATGAAGAAATAACAACATTCTGCCCCATCAAATC 240
|||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 179 TCATGATTTATCATCATTCTGTCGAGATGAAGAAGTAAAAACATTCTGCCCCATCAAATC 238
Query 241 GGAATCAGACGATGACTTATTAAGGAGCATAGAATCCGAAACTTCATCTTCCGTGGTGAG 300
||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 239 GGAATCAGACGATGAATTATTAAGGAGCATAGAAGCCGAAACTTCATCTTCCGTGGTGAG 298
Query 301 CACGTCAGACtcatcatcatcagaagctcatcaccatcaccgtcatcatcatTCGTCTGG 360
|||||||| | | ||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 299 CACGTCAG----A-C-TCATCAGAAACTCATCACCATCACCATCATCATCATTCGTCTGG 352
Query 361 AGGTCCCAACAACGGTCACTGGAGAAGAGGTTTCTTCCGATTACTTAAGAAAGGATCATC 420
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 353 AGGTCCCAACAACGGTCACTGGAGAAGAGGTTTCTTCCGTTTGCTTAAGAAAGGATCATC 412
Query 421 CGCAATGCCATTCAACACGTTCACACCTCTCAAAGGAGTTCCGAAACTGACCAGACGGAA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 413 CGCAATGCCATTCAACACGTTCACACCTCTCAAAGGAGTTCCGAAACTGACCAGACGGAA 472
Query 481 GAGCAAACGCATAAGGGACAACATGGTTCCCGTTATACCTGCTCTTGACACTGATGACTT 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 473 GAGCAAACGCATAAGGGACAACATGGTTCCCGTTATACCTGCTCTTGACACTGATCACTT 532
Query 541 GTTCTACTTCAAACCCTCCTGGAGGAACTTCTCTCTCCAAGATATTCAAACTGCCACAAA 600
|||||| ||||||||||||||||||||||||||||||| ||||||||| || || |||||
Sbjct 533 GTTCTATTTCAAACCCTCCTGGAGGAACTTCTCTCTCCGAGATATTCAGACCGCGACAAA 592
Query 601 TGACTACAGCCGTGAAAATCTGATCGGAGAAGGAGGATATGCAGAGGTGTATAAGGGACA 660
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 593 TGACTACAGCCGTGAAAATCTGATCGGAGAAGGAGGATATGCGGAGGTGTATAAGGGACA 652
Query 661 AATGCCAGATGGGCAAATAGTAGCTATAAAGAAGTTGACTAGAGGTTCTGCAGAAGAGAT 720
|||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 653 AATGGCAGATGGGCAGATAGTAGCGATAAAGAAGTTGACTAGAGGTTCTGCAGAAGAGAT 712
Query 721 GACGATGGATTATCTGTCCGAACTTGGGATCATAGTTCATGTAGATCATCCAAACATTGC 780
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 713 GACGATGGATTATCTGTCCGAACTAGGGATCATTGTTCATGTAGATCATCCAAACATTGC 772
Query 781 TAAGCTTATTGGTTATTGTGTTGAAGGAGGAATGCATCTTGTTCTTGAGCTATCTCCTAA 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 773 TAAGCTTATTGGTTATTGTGTTGAAGGAGGAATGCATCTTGTTCTTGAGCTATCTCCTAA 832
Query 841 TGGAAGCCTTGCTTCTTTGCTCTACGAGGCGAAGGGGAAATTGAATTGGAGCATGAGATA 900
||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 833 TGGAAGCCTTGCTTCTTTGCTCTACGAGGCGAAGGAGAAACTGAATTGGAGCATGAGATA 892
Query 901 CAAAGTGGCCATGGGAACAGCAGAGGGACTGTACTATCTCCATGAAGGTTGTCAGAGAAG 960
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 893 CAAAGTGGCGATGGGAACAGCAGAGGGACTCTACTATCTCCATGAAGGTTGTCAGAGAAG 952
Query 961 GATCATTCATAAAGACATTAAAGCTTCTAACATCCTTCTCACTCAGAACTTTGAGGCTCA 1020
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 953 AATCATTCATAAAGACATTAAAGCTTCTAACATTCTTCTCACTCAGAACTTTGAGGCTCA 1012
Query 1021 GATATCTGATTTCGGGCTAGCGAAATGGCTACCGGACCAATGGACTCACCATACTGTATC 1080
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1013 GATATCGGATTTCGGGCTAGCGAAATGGCTACCAGACCAATGGACTCACCATACTGTATC 1072
Query 1081 GAAAGTCGAAGGAACATTCGGTTACCTTCCACCGGAGTTCTTCATGCATGGGATAGTAGA 1140
||||| ||||||||||||||||||||||| || ||||| ||||||||||||||||||||
Sbjct 1073 AAAAGTTGAAGGAACATTCGGTTACCTTCCGCCAGAGTTTTTCATGCATGGGATAGTAGA 1132
Query 1141 CGAAAAAACAGACGTATATGCTTATGGTGTCCTGCTTCTAGAGCTCATTACCGGTAGACA 1200
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1133 CGAGAAAACAGACGTATATGCTTATGGTGTCCTGCTTCTCGAGCTCATTACCGGTAGACA 1192
Query 1201 AGCTCTCGACAGCTCACAACATAGCATTGTCATGTGGGCCAAGCCATTAATCAAAGAGAA 1260
||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 1193 AGCCCTCGACAGCTCACAACATAGCATTGTCATGTGGGCTAAGCCATTGATCAAAGAGAA 1252
Query 1261 CAAGATCAAACAACTTGTTGATCCGATTCTGGAAGATGACTACGACGTAGAAGAGTTGGA 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1253 CAAGATCAAACAACTTGTTGATCCGATTCTGGAAGATGACTACGACGTAGAAGAGTTGGA 1312
Query 1321 CCGTCTTGTCTTCATAGCTTCCTTGTGCATACACCAAACCTCCATGAACCGGCCTCAGAT 1380
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1313 CCGTCTTGTCTTCATAGCTTCCTTGTGTATACATCAAACCTCCATGAACCGGCCTCAGAT 1372
Query 1381 GAGCCAGGTTGTGGAGATTCTGAGGGGAGACAAGTGCAGCTTAGATAAGCTAAGAGAGCG 1440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1373 GAGCCAGGTTGTGGAGATTCTGAGGGGAGACAAGTGCAGCTTAGATAAGCTAAGAGAGCG 1432
Query 1441 AGAAAACTCCAAACTCCAGAGGACTTACTCTGAAGAACTATTGGATAACGAAGAATACAA 1500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1433 AGAAAACTCCAAACTCCAGAGGACTTACTCTGAAGAACTATTGGATAACGAAGAATACAA 1492
Query 1501 CTCGACACGATATTTAAACGATATTCATCGACACATGGAGACCGTTCTCGGAACATCTAA 1560
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1493 CTCGACAAGATATTTAAACGATATTAATCGACACATGGAGACCGTTCTCGGAACATCTAA 1552
Query 1561 GGATTC-TT--GAAATGTCCTAGTTGCTAAATG 1590
||||| || ||||||||||| ||||||||||
Sbjct 1553 GGATTAATTCTGAAATGTCCTACTTGCTAAATG 1585
> AT5G35960.1 | Symbols: | Protein kinase family protein | chr5:14108524-14110536
REVERSE LENGTH=1290
Length=1290
Score = 209 bits (113), Expect = 6e-53
Identities = 389/517 (75%), Gaps = 40/517 (8%)
Strand=Plus/Plus
Query 767 CATCCAAACATTGCTAAGCTTATT-GGTTATTGTGTTGAAGGAGGAATGCATCTTGTTCT 825
||||| ||||| ||||||||| || || ||| | ||||||||||||||||||||||||||
Sbjct 562 CATCCCAACATAGCTAAGCTT-TTAGGCTATGGAGTTGAAGGAGGAATGCATCTTGTTCT 620
Query 826 TGAGCTATCTCCTAATGGAAGCCTT-GCTTCTTTGCTCTACGAGG-CGAAGGGGAA-ATT 882
|||| |||| ||| |||| ||| || |||||| ||||||| || | |||| ||| ||
Sbjct 621 TGAGTTATCACCTCATGGCAGC-TTAGCTTCTATGCTCTAT-AGCTCCAAGGAGAAGAT- 677
Query 883 GAATTGGAGCATGAGATACAA-AGTGGCCATG-GGAACAGCAGAGGGACT-GTACTATCT 939
||| |||||||| || ||||| | | || || ||| || ||||| || || |||||
Sbjct 678 GAAATGGAGCATTAGGTACAAGA-TAGC-ATTAGGAGTTGCGGAGGGTCTAGTG-TATCT 734
Query 940 CCAT-GAAGGTTGTCAGAGAAGGATCATTCATAAAGACATTAAAGCTTCTAACATCCTTC 998
||| || || ||||| || || || || |||| ||| || ||||| | ||||| ||||
Sbjct 735 TCATAGA-GGATGTCATAGGAGAATTATACATAGAGATATCAAAGCCGCAAACATTCTTC 793
Query 999 TCACTCA-GAACTTTGAGGCTCAGATATCTGA-TTTCGGGCTAGCGAAATGGCTACCGGA 1056
|||| || || ||| ||||||||| ||| ||| ||||| ||||| ||| |||| ||
Sbjct 794 TCACACATGATTTTTCTC-CTCAGATATGTGACTTT-GGGCTTGCGAAGTGGTTACCTGA 851
Query 1057 CCAAT-GGACTCACCATACTGTATCGAAAGTCGAAGGAACATTCGGTTACCTTCCACCGG 1115
||| |||| ||||| | ||| || ||| | || || |||||||| || ||| | || |
Sbjct 852 A-AATTGGACACACCACATTGTTTCCAAATTTGAGGGCACATTCGGGTATCTTGCTCCAG 910
Query 1116 AGTTCTTCATGCATGGGATAGTAGACGAAAAAACAGACGTATAT-GCTTATGG-TGTCCT 1173
||| ||| | |||||||||||||| ||||| || || |||| | || | ||| ||| ||
Sbjct 911 AGTACTTAACACATGGGATAGTAGATGAAAAGACCGATGTAT-TCGCCT-TGGGTGTACT 968
Query 1174 GCTT-CTAGAGCTCATTACCGGTA-GACAAGCTCTCGAC-AGCTCACAA-CATAG-CATT 1228
|| || || || ||||||| | ||| ||||||||| | ||| ||| || || | ||
Sbjct 969 T-TTACTGGAACTTGTTACCGG-ACGACGAGCTCTCGATTA-CTC-CAAGCAAAGTC-TT 1023
Query 1229 GT-CATGTGGGCCAAGCCATTAATCAAAGA-GAACAA 1263
|| | | ||||| || ||||| || || || ||||||
Sbjct 1024 GTTC-TATGGGCTAAACCATTGATGAA-GAAGAACAA 1058
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78513652380
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5