BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941426
Length=1081
Score E
Sequences producing significant alignments: (Bits) Value
AT5G18940.1 | Symbols: | Mo25 family protein | chr5:6325786-63... 1753 0.0
> AT5G18940.1 | Symbols: | Mo25 family protein | chr5:6325786-6328354
FORWARD LENGTH=1481
Length=1481
Score = 1753 bits (949), Expect = 0.0
Identities = 1039/1083 (96%), Gaps = 4/1083 (0%)
Strand=Plus/Plus
Query 1 GCGGAATCCGAATCTGATCTCATGTCCTTCTCCTTCTTCAAGCCCTCTAGGCCTAAAACG 60
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 166 GCGGAATCCGAATCTGATCTCATGTCTTTCTCATTCTTCAAGCCCTCTAGGCCTAAAACG 225
Query 61 CCTCAAGAGGTCGTTAAAGCGATCAAAGATAGTCTTATGGCTCTCGACACCAAGACCGTC 120
||||||||||| |||||||| |||| ||| ||||||||||||||||||||||||||||||
Sbjct 226 CCTCAAGAGGTTGTTAAAGCCATCAGAGACAGTCTTATGGCTCTCGACACCAAGACCGTC 285
Query 121 GTCGAAGTTAAAGCCCTCGAGAAGGCTTTGGAAGAAGTTGAGAAGAATATTTCTTCTCTG 180
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 286 GTCGAAGTTAAAGCCCTCGAGAAGGCTTTGGAAGAAGTTGAGAAGAATTTTTCTTCTCTA 345
Query 181 AGAGGAATGCTTTCTGGAGATGGTGAAG-TTGAACCAAATGCTGATCAAGCTCTACAATT 239
|||||||| |||||||||||||||| || |||||||||||||||||| ||| |||| ||
Sbjct 346 AGAGGAATACTTTCTGGAGATGGTG-AGACTGAACCAAATGCTGATCAGGCTGTACAGTT 404
Query 240 AGCATTAGAGTTTTGCAAAGAAGATGTCATTTCTCTTGTTATTCATAAGCTACACATTTT 299
||||||||||||||||||||||||||| | |||||||||||||||||||| || |||||
Sbjct 405 AGCATTAGAGTTTTGCAAAGAAGATGTTGTCTCTCTTGTTATTCATAAGCTTCATATTTT 464
Query 300 GGGATGGGAAGCAAGAAAAGATTTACTGCATTGTTGGTCTATCTTGTTGAAGCAAAAAGT 359
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 465 GGGATGGGAAACAAGAAAAGATTTACTGCATTGTTGGTCTATCCTGTTGAAGCAAAAGGT 524
Query 360 CGGCGAGACTTATTGCTGTGTGCAATACTTTGAAGAGCATTTCGAGTTGCTTGACTCTTT 419
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 525 CGGCGACACTTATTGCTGTGTGCAATACTTTGAAGAGCATTTTGAGTTGCTTGACTCTTT 584
Query 420 GGTTGTATGCTATGACAACAAGGAGATTGCTCTGCATTGTGGAAGTATGCTTCGGGAATG 479
||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 585 AGTTGTATGCTATGACAATAAGGAGATTGCTCTGCATTGTGGAAGTATGCTTAGGGAATG 644
Query 480 CATTAAATTCCCAAGTCTTGCTAAGTACATTTTAGAGTCTGCCTGCTTTGAGTTATTCTT 539
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 645 CATTAAATTCCCAAGTCTTGCTAAGTACATATTAGAGTCTGCCTGCTTTGAGTTATTCTT 704
Query 540 CAAGTTTGTGGAGTTGCCAAACTTTGATGTTGCTTCTGATGCATTTTCAACATTCAAGGA 599
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 705 CAAGTTCGTGGAATTGCCAAACTTTGATGTTGCTTCTGATGCATTTTCAACATTCAAGGA 764
Query 600 TCTTCTTACAAAACATGACTCTGTCGTCTCTGAGTTTCTCACCTCTCATTACAGTGAGTT 659
|||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 765 TCTTCTTACAAAACATGACTCTGTAGTCTCTGAGTTTCTCACCTCTCATTACACTGAGTT 824
Query 660 CTTTGATGTTTATGAAAGACTTTTGACATCTTCAAATTATGTGACGAGAAGACAATCACT 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 825 CTTTGATGTTTATGAAAGACTTTTGACATCTTCAAATTATGTGACGAGAAGACAATCACT 884
Query 720 GAAGCTTCTCTCGGATTTCCTGTTGGAGCCTCCAAATTCCCACATAATGAAGAAATTCAT 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 885 GAAGCTTCTCTCGGATTTCCTGTTGGAGCCTCCAAATTCCCACATAATGAAGAAATTCAT 944
Query 780 CTTAGAAGTTCGTTATTTGAAAGTCATAATGACACTTTTGAAGGATTCGAGCAAGAACAT 839
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 945 CTTAGAAGTTCGTTATTTGAAAGTCATAATGACACTTTTGAAGGACTCGAGCAAGAACAT 1004
Query 840 TCA-AGTATCAGCCTTCCATATATTTAAGATCTTTGTTGCGAATCCTAATAAGCCGCAAG 898
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1005 TCAGA-TATCAGCCTTCCATATATTTAAGATCTTTGTTGCGAATCCTAATAAGCCGCAAG 1063
Query 899 AAGTGAAGATCATATTGGCAAGAAACCATGAGAAATTACTCGAACTCCTCAACAATTTGT 958
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1064 AAGTGAAGATCATATTGGCAAGAAACCATGAGAAATTACTCGAACTCCTCCACGATTTGT 1123
Query 959 CCCCTGGTAAAGGTTCCGAAGATGATCAATTCGAAGAGGAAAAGGAGCTGATCATCGAGG 1018
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1124 CCCCTGGTAAAGGTTCCGAAGATGATCAATTCGAAGAGGAAAAGGAGCTCATCATCGAGG 1183
Query 1019 AGATTCAAAAAATGTCTGGCTTGAAAAACCTCGAACATTAAACACTCTTTTGCCTGCTCA 1078
||||||||||| |||||||||||||||||||||||| ||||| | |||||||||| ||||
Sbjct 1184 AGATTCAAAAATTGTCTGGCTTGAAAAACCTCGAACGTTAAAAATTCTTTTGCCTCCTCA 1243
Query 1079 TCT 1081
|||
Sbjct 1244 TCT 1246
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52961574975
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5