BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941427
Length=1492
Score E
Sequences producing significant alignments: (Bits) Value
AT5G18950.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 2231 0.0
> AT5G18950.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr5:6328379-6329970 REVERSE LENGTH=1592
Length=1592
Score = 2231 bits (1208), Expect = 0.0
Identities = 1390/1478 (94%), Gaps = 12/1478 (1%)
Strand=Plus/Plus
Query 21 ATGAGTAGAGGTCAGTCGTATTTGATCAACTTCTTCAGAAACAGAACTCGACAGAACCCT 80
|||||||||||||||||||||||||| | |||||| |||||| |||||||| ||||||||
Sbjct 1 ATGAGTAGAGGTCAGTCGTATTTGATTAGCTTCTTTAGAAACCGAACTCGAAAGAACCCT 60
Query 81 AATGCCCAGATACGGAGTCTAACTGTCGAGTCTCGTGATAGTGAATCCAAGCCCGATGAG 140
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 61 AATACCCAGATACGGAGTCTAACTGTCGAGTCTCGTGATTGTGAATCCAAGCCCGATGAG 120
Query 141 CAAAAATCGGCTGTGAGTTATACGGAGATGGCTAAAACTGTGTCTACGATCATGAGACAG 200
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 121 CAAAAATCGGCTGTGAGTTATACGGAGATGGCTAAAACTGTGTCTACCATCATGAGAGAG 180
Query 201 AGACAGAGATGGCAACAAACTCTGGTATCTGATTTTCCCTCGTTCGATTTCGCAGATCCT 260
|||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||
Sbjct 181 AGACAGAGATGGCAACAAACTCTGGTATCTGATTTTCCTTCGTTTGATTTCGCTGATCCT 240
Query 261 TTGTTTTTCCGAC-AACTGTTGAAATCTCAGAACAATGTTATGTTTTCTTTGTGGTTCTT 319
||||||| || | |||||||||||||||||||||||||| |||||||| ||||||| ||
Sbjct 241 CTGTTTTT-CGGCGAACTGTTGAAATCTCAGAACAATGTTCTGTTTTCTCTGTGGTTTTT 299
Query 320 CCGGTGGTTGTGTTCCAACTATGATTACACACCTGATTCTGTTTCTTTAAATCTTCTGTT 379
|||||||||||||||||| |||||||||||||||| | |||||||||| ||| |||| ||
Sbjct 300 CCGGTGGTTGTGTTCCAATTATGATTACACACCTGGTCCTGTTTCTTTGAATATTCTCTT 359
Query 380 TGGTGCTCTTTTGGATGGAAAAGCCGTGAAAGCTGCGAAAAGTTTCCTCGATACCACTGG 439
|||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 360 TGGTGCCCTTTTGGATGGAAAAGCCGTGAAAGCTGCGAAGAGTTTTCTCGATACCACTGG 419
Query 440 TTTTAAACCTGAGCCCACTTTATTAGAGCAATACGTGAAGTGTCTTAGTGAAGAAGGGTT 499
|||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 420 CTTTAAACCTGAGCCTACGTTATTAGAGCAATACGTGAAGTGTCTTAGTGAAGAAGGGTT 479
Query 500 GGTAGAGGAAGCTATTGAAGTGTATAATTTACTGAAAGAGATGGGAATTAGTTCTTCAGT 559
|||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 480 GGTAGAGGAAGCTATTGAAGTGTATAATGTACTGAAAGATATGGGAATTAGTTCTTCAGT 539
Query 560 TGTGACTTGCAATTCTGTTTTATTAGGTTGCTTGAAAGCGAGGAAACTCGATCGGTTTTG 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TGTGACTTGCAATTCTGTTTTATTAGGTTGCTTGAAAGCGAGGAAACTCGATCGGTTTTG 599
Query 620 GGAACTTCATAAGGAAATGATAAAATCTGAGTTTGATTTAGAGCGGATTCGGTGTTTGAT 679
||||||||||||||||||| || ||||||||||||||| |||| ||||||||||||||||
Sbjct 600 GGAACTTCATAAGGAAATGGTAGAATCTGAGTTTGATTCAGAGAGGATTCGGTGTTTGAT 659
Query 680 TCAAGCTTTGTGTGATGGTGGGGAGGTTTCAGAAGGCTATGAGCTTTTGAAGCAGGGATT 739
|| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 660 TCGAGCTTTGTGTGATGGTGGGGATGTTTCAGAAGGCTATGAGCTTTTGAAGCAGGGATT 719
Query 740 GAAACAAGGGCTTGATCCAGGACA-TGATGTGTATGCCAAACTGATATCTGGTTTCTGTG 798
|||||||||||||||||||||||| | |||||||||| |||||||||||||| |||||||
Sbjct 720 GAAACAAGGGCTTGATCCAGGACAGT-ATGTGTATGCTAAACTGATATCTGGATTCTGTG 778
Query 799 AGATTGGGAACTATGCTTGTATATCGGAGATTCTTCATACGATGATAGCGTGGAACCATT 858
|||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 779 AGATTGGGAACTATGCTTGTATGTCGGAGGTTCTTCATACGATGATAGCGTGGAACCATT 838
Query 859 TCCCGAGTATATATACATACCAGAGGATTATAAAGGGGTTGTGTATGAATAAGAAGGAGC 918
|||||||||| |||| |||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 839 TCCCGAGTATGTATATATACCAGAAGATTATAAAGGGGTTGTGTATGAATAAGAAGCAGC 898
Query 919 TTGAGGCTTATTGTATATTCAAGAATCTGAAAGAGAAAGGCTATGCACCTGACAGAGTCG 978
|||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
Sbjct 899 TTGAGGCTTATTGTATATTCAAGAATCTGAAAGATAAAGGCTATGCACCTGATAGAGTTG 958
Query 979 TGTATACTACAATGATCC-ATGGATTCTGCGAGAAGGGATGGTTAGGGAGCGCGAGGAAG 1037
|||||||||| ||||| | | |||||||| ||||||||||||||||||||||||||||||
Sbjct 959 TGTATACTACGATGATTCGA-GGATTCTGTGAGAAGGGATGGTTAGGGAGCGCGAGGAAG 1017
Query 1038 CTGTGGTTTGAGATGATTAA-AAAGGGGATGCGACCAAACGAGTTCGCTTACAATGTGAT 1096
|| |||||||||||||| || |||||| ||||||||||||||||||||||||||||||||
Sbjct 1018 CTTTGGTTTGAGATGATAAAGAAAGGG-ATGCGACCAAACGAGTTCGCTTACAATGTGAT 1076
Query 1097 GATGCACGGGCATTTTAAAATAGGCGAAATTTCGCTTGGTGAAGCATTCTACAGTGAGAT 1156
||| |||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||
Sbjct 1077 GATACACGGGCATTTTAAAAGAGGCGAAATTTCGCTTGTTGAAGCATTCTACAATGAGAT 1136
Query 1157 GTTGAGAAATGGCTATGGAGAAACAACGTTAAGCTGCAATAC-AGTGATAA-GTGGTTTA 1214
|||||||||||||||||||| ||||| ||||||||||||||| | |||||| | |||||
Sbjct 1137 GTTGAGAAATGGCTATGGAGGAACAATGTTAAGCTGCAATACGA-TGATAAAG-GGTTTC 1194
Query 1215 TGCTCACATGGAAAATCAGACGAGGCATTCGAGATTTTCAAGAAAATGTCTGAAACAGGG 1274
|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||
Sbjct 1195 TGCTCACATGGAAAATCAGACGAGGCCTTCGAGATTTTCAAGAATATGTCTGAAACCGGG 1254
Query 1275 GTTACACCCAACGCAATCACGTATAACGCTTTGATAAAAGGACTTTGCAAAGAAAACAAG 1334
|||||||| || |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1255 GTTACACCGAATGCAATCACGTATAACGCTTTGATAAAAGGATTTTGCAAAGAAAACAAG 1314
Query 1335 GTTGAGAAAGGCATGAAACTATACAAGGAGCTTAAGGCCTTAGGGCTGAAGCCTTCTGGT 1394
|||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1315 GTTGAGAAAGGCTTGAAACTATACAAGGAGCTTAAGGCCTTAGGTTTGAAGCCTTCTGGT 1374
Query 1395 GCGGCATATGCTGCACTAGTGAGAAATCTGAAGATGTCTGATTCTGTTGGAACTTCTTTA 1454
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1375 ATGGCATATGCTGCACTAGTGAGAAATCTGAAGATGTCTGATTCTGTTGCAACTTCTTTA 1434
Query 1455 AATCTAAAGATTGCCTGACAGAAACTAATTTTTGTTGG 1492
|||||| |||||| |||| ||||||| |||||||||||
Sbjct 1435 AATCTAGAGATTGTCTGAAAGAAACTTATTTTTGTTGG 1472
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73593998970
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5