BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg941436 Length=1031 Score E Sequences producing significant alignments: (Bits) Value AT5G19040.1 | Symbols: ATIPT5, IPT5 | isopentenyltransferase 5 ... 1548 0.0 > AT5G19040.1 | Symbols: ATIPT5, IPT5 | isopentenyltransferase 5 | chr5:6361837-6363413 REVERSE LENGTH=1577 Length=1577 Score = 1548 bits (838), Expect = 0.0 Identities = 960/1020 (94%), Gaps = 4/1020 (0%) Strand=Plus/Plus Query 4 AAGGAATTTTTATAAGAATGAAGCCATGCATGACGGCTCTAAGGCAAGTGATTCAACC-C 62 ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 16 AAGGAGTTTTTATAAGAATGAAGCCATGCATGACGGCTCTAAGACAAGTGATTCAACCAT 75 Query 63 T-T-GTTGAACTTCCAAGGAAACATGGTCGATGTTCCGTTTTTCCGGCGAAAAGACAAGG 120 | | |||||||||||||||||||||||| || |||||||||||||||||||||||||||| Sbjct 76 TGTCGTTGAACTTCCAAGGAAACATGGTGGACGTTCCGTTTTTCCGGCGAAAAGACAAGG 135 Query 121 TTGTTTTCGTTATGGGCGCCACCGGAACCGGCAAATCTCGTCTAGCCATTGACCTAGCCA 180 |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 136 TTGTTTTCGTCATGGGAGCCACCGGAACCGGCAAATCTCGTCTAGCCATTGACCTAGCCA 195 Query 181 CTCGTTTCCCGGCGGAGATCGTAAACTCCGACAAGATTCAAGTCTATAAGGGTCTAGACA 240 ||||||| ||||||||||| ||||||||||||||||| || |||||||| |||||||||| Sbjct 196 CTCGTTTTCCGGCGGAGATTGTAAACTCCGACAAGATCCAGGTCTATAAAGGTCTAGACA 255 Query 241 TCGTGACAAACAAAGTCACTCCTGAGGAAAGCCTTGGCATCCCTCACCACCTCCTCGGCA 300 | ||||| |||||||||||||||||||||||||||||| | ||||||||||| ||||||| Sbjct 256 TTGTGACTAACAAAGTCACTCCTGAGGAAAGCCTTGGCGTTCCTCACCACCTTCTCGGCA 315 Query 301 CCGTCCACGACACTTACGAAGATTTCACGGCGGAGGATTTCCAGGGGGAAGCAATCAGGG 360 |||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||| Sbjct 316 CCGTCCACGACACTTACGAAGATTTCACGGCGGAGGATTTTCAGCGTGAAGCAATCAGGG 375 Query 361 CCGTTGAGTCAATCGTCCAGAGGGGCCGTGTCCCGATCATAGCTGGTGGTTCCAATTCTT 420 |||| ||||||||||||||||| | |||||||||||||||||| |||||||||||||||| Sbjct 376 CCGTCGAGTCAATCGTCCAGAGAGACCGTGTCCCGATCATAGCCGGTGGTTCCAATTCTT 435 Query 421 ACATCGAGGCTCTGGTCAACGATTGCGTTGACTTCCGGTTAAGGTATAATTGTTGCTTCT 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 436 ACATCGAGGCTCTGGTCAACGATTGCGTTGACTTCCGGTTAAGGTATAATTGTTGCTTCT 495 Query 481 TGTGGGTCGACGTCTCAAGACCGGTTTTACACTCTTTTGTCTCGGAGCGCGTCGATAAGA 540 |||||||||||||||| ||||||||||||||||| |||||||||||||| || ||||||| Sbjct 496 TGTGGGTCGACGTCTCTAGACCGGTTTTACACTCGTTTGTCTCGGAGCGAGTTGATAAGA 555 Query 541 TGGTTGAGATGGGTCTCGTCGGCGAGGTTCGCCGCATCTTCGATTCGTCTTCGTCGGATT 600 ||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||||||| Sbjct 556 TGGTTGATATGGGTCTCGTCGACGAGGTTCGCCGCATCTTCGATCCGTCTTCGTCGGATT 615 Query 601 ACTCAGCCGGTATCCGGCGTGCCATCGGAGTTCCAGAGCTTGACGAATTTCTCCGGGCGG 660 |||| || || || || || ||||| |||||||||||||| |||||||||||||| ||| Sbjct 616 ACTCCGCTGGAATTCGCCGAGCCATTGGAGTTCCAGAGCTCGACGAATTTCTCCGTTCGG 675 Query 661 AGTTACGGAATAATCCGGCGGAGACGACGGAGAGACTTCTTGAAACGGCGATAGAGAAAA 720 || | |||||| |||||||||||||||||||||||||||||||||||||||| ||||| | Sbjct 676 AGATGCGGAATTATCCGGCGGAGACGACGGAGAGACTTCTTGAAACGGCGATCGAGAAGA 735 Query 721 TTAAAGAGAACACTTGTTTGCTTGCGTGTCGACAATTGCAGAAGATTCAAAGACTTTACA 780 ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| Sbjct 736 TTAAAGAGAACACTTGTTTGCTTGCGTGTAGACAATTGCAGAAGATTCAAAGGCTTTACA 795 Query 781 AGCAGTGGAAATGGAACATGCACCGTGTCGACGCGACGGAGGTTTTTCTCCGACGAGGAG 840 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 796 AGCAGTGGAAGTGGAACATGCACCGTGTCGACGCGACGGAGGTTTTTCTCCGACGAGGAG 855 Query 841 AAGAAGCTGATGAGGCTTGGGATAACTCAGTGGCTCATCCGAGCGCACTCGCCGTCGAAA 900 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 856 AAGAAGCTGATGAGGCTTGGGATAACTCAGTGGCTCATCCGAGCGCACTCGCCGTCGAAA 915 Query 901 GGTTCCTTAATTACAACGATGACCACCATTTGGACGGCGCCAATATTCTCCTACCTGAGA 960 |||||||| ||||| |||||||||||||||||| |||||||||||||||||||| |||| Sbjct 916 AGTTCCTTAGTTACAGCGATGACCACCATTTGGAAGGCGCCAATATTCTCCTACCGGAGA 975 Query 961 TCTCCGCCGTTCCACCTCTTCCAGCCGCCGTGGCGGCGATTTCCCGGTGAGGTAATAACA 1020 |||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 976 TCTCTGCCGTTCCGCCTCTTCCAGCCGCCGTGGCGGCGATTTCCCGGTGAGGTAA-AACA 1034 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 50535551882 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5