BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941436
Length=1031
Score E
Sequences producing significant alignments: (Bits) Value
AT5G19040.1 | Symbols: ATIPT5, IPT5 | isopentenyltransferase 5 ... 1548 0.0
> AT5G19040.1 | Symbols: ATIPT5, IPT5 | isopentenyltransferase
5 | chr5:6361837-6363413 REVERSE LENGTH=1577
Length=1577
Score = 1548 bits (838), Expect = 0.0
Identities = 960/1020 (94%), Gaps = 4/1020 (0%)
Strand=Plus/Plus
Query 4 AAGGAATTTTTATAAGAATGAAGCCATGCATGACGGCTCTAAGGCAAGTGATTCAACC-C 62
||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 16 AAGGAGTTTTTATAAGAATGAAGCCATGCATGACGGCTCTAAGACAAGTGATTCAACCAT 75
Query 63 T-T-GTTGAACTTCCAAGGAAACATGGTCGATGTTCCGTTTTTCCGGCGAAAAGACAAGG 120
| | |||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 76 TGTCGTTGAACTTCCAAGGAAACATGGTGGACGTTCCGTTTTTCCGGCGAAAAGACAAGG 135
Query 121 TTGTTTTCGTTATGGGCGCCACCGGAACCGGCAAATCTCGTCTAGCCATTGACCTAGCCA 180
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 136 TTGTTTTCGTCATGGGAGCCACCGGAACCGGCAAATCTCGTCTAGCCATTGACCTAGCCA 195
Query 181 CTCGTTTCCCGGCGGAGATCGTAAACTCCGACAAGATTCAAGTCTATAAGGGTCTAGACA 240
||||||| ||||||||||| ||||||||||||||||| || |||||||| ||||||||||
Sbjct 196 CTCGTTTTCCGGCGGAGATTGTAAACTCCGACAAGATCCAGGTCTATAAAGGTCTAGACA 255
Query 241 TCGTGACAAACAAAGTCACTCCTGAGGAAAGCCTTGGCATCCCTCACCACCTCCTCGGCA 300
| ||||| |||||||||||||||||||||||||||||| | ||||||||||| |||||||
Sbjct 256 TTGTGACTAACAAAGTCACTCCTGAGGAAAGCCTTGGCGTTCCTCACCACCTTCTCGGCA 315
Query 301 CCGTCCACGACACTTACGAAGATTTCACGGCGGAGGATTTCCAGGGGGAAGCAATCAGGG 360
|||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||
Sbjct 316 CCGTCCACGACACTTACGAAGATTTCACGGCGGAGGATTTTCAGCGTGAAGCAATCAGGG 375
Query 361 CCGTTGAGTCAATCGTCCAGAGGGGCCGTGTCCCGATCATAGCTGGTGGTTCCAATTCTT 420
|||| ||||||||||||||||| | |||||||||||||||||| ||||||||||||||||
Sbjct 376 CCGTCGAGTCAATCGTCCAGAGAGACCGTGTCCCGATCATAGCCGGTGGTTCCAATTCTT 435
Query 421 ACATCGAGGCTCTGGTCAACGATTGCGTTGACTTCCGGTTAAGGTATAATTGTTGCTTCT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 436 ACATCGAGGCTCTGGTCAACGATTGCGTTGACTTCCGGTTAAGGTATAATTGTTGCTTCT 495
Query 481 TGTGGGTCGACGTCTCAAGACCGGTTTTACACTCTTTTGTCTCGGAGCGCGTCGATAAGA 540
|||||||||||||||| ||||||||||||||||| |||||||||||||| || |||||||
Sbjct 496 TGTGGGTCGACGTCTCTAGACCGGTTTTACACTCGTTTGTCTCGGAGCGAGTTGATAAGA 555
Query 541 TGGTTGAGATGGGTCTCGTCGGCGAGGTTCGCCGCATCTTCGATTCGTCTTCGTCGGATT 600
||||||| ||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 556 TGGTTGATATGGGTCTCGTCGACGAGGTTCGCCGCATCTTCGATCCGTCTTCGTCGGATT 615
Query 601 ACTCAGCCGGTATCCGGCGTGCCATCGGAGTTCCAGAGCTTGACGAATTTCTCCGGGCGG 660
|||| || || || || || ||||| |||||||||||||| |||||||||||||| |||
Sbjct 616 ACTCCGCTGGAATTCGCCGAGCCATTGGAGTTCCAGAGCTCGACGAATTTCTCCGTTCGG 675
Query 661 AGTTACGGAATAATCCGGCGGAGACGACGGAGAGACTTCTTGAAACGGCGATAGAGAAAA 720
|| | |||||| |||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 676 AGATGCGGAATTATCCGGCGGAGACGACGGAGAGACTTCTTGAAACGGCGATCGAGAAGA 735
Query 721 TTAAAGAGAACACTTGTTTGCTTGCGTGTCGACAATTGCAGAAGATTCAAAGACTTTACA 780
||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 736 TTAAAGAGAACACTTGTTTGCTTGCGTGTAGACAATTGCAGAAGATTCAAAGGCTTTACA 795
Query 781 AGCAGTGGAAATGGAACATGCACCGTGTCGACGCGACGGAGGTTTTTCTCCGACGAGGAG 840
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 796 AGCAGTGGAAGTGGAACATGCACCGTGTCGACGCGACGGAGGTTTTTCTCCGACGAGGAG 855
Query 841 AAGAAGCTGATGAGGCTTGGGATAACTCAGTGGCTCATCCGAGCGCACTCGCCGTCGAAA 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 856 AAGAAGCTGATGAGGCTTGGGATAACTCAGTGGCTCATCCGAGCGCACTCGCCGTCGAAA 915
Query 901 GGTTCCTTAATTACAACGATGACCACCATTTGGACGGCGCCAATATTCTCCTACCTGAGA 960
|||||||| ||||| |||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 916 AGTTCCTTAGTTACAGCGATGACCACCATTTGGAAGGCGCCAATATTCTCCTACCGGAGA 975
Query 961 TCTCCGCCGTTCCACCTCTTCCAGCCGCCGTGGCGGCGATTTCCCGGTGAGGTAATAACA 1020
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 976 TCTCTGCCGTTCCGCCTCTTCCAGCCGCCGTGGCGGCGATTTCCCGGTGAGGTAA-AACA 1034
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50535551882
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5