BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941442
Length=853
Score E
Sequences producing significant alignments: (Bits) Value
AT5G19080.1 | Symbols: | RING/U-box superfamily protein | chr5... 1238 0.0
> AT5G19080.1 | Symbols: | RING/U-box superfamily protein | chr5:6378339-6380605
FORWARD LENGTH=1516
Length=1516
Score = 1238 bits (670), Expect = 0.0
Identities = 797/858 (93%), Gaps = 10/858 (1%)
Strand=Plus/Plus
Query 1 ACAATGGGTTTAATCCGATGATGAGACCGGTTT-TCTTCGGTCCGCCTCAAGTTCCGGTT 59
||||||||||||||||||||||||| ||||||| | ||||||||| ||| ||| |||||
Sbjct 366 ACAATGGGTTTAATCCGATGATGAGGCCGGTTTAT-TTCGGTCCGACTCCGGTTGCGGTT 424
Query 60 ATGCAACCGCCTGCACCTTACGTGGAGCATCAGAGCGCCAAGAAGGTGAAGAACGATGTC 119
||| |||||||||||||||| ||||||||||||| ||| |||||||| ||||||||||||
Sbjct 425 ATGGAACCGCCTGCACCTTATGTGGAGCATCAGACCGCTAAGAAGGTTAAGAACGATGTC 484
Query 120 AATGTGCATAAAGCTACGGTGGGGCTCGAAGCAGACGATCTTAACCCTGGTCATCATCTT 179
|||||| |||||||||||||| |||||| ||| ||||||||||||||||||||| |||||
Sbjct 485 AATGTGAATAAAGCTACGGTGAGGCTCGTAGCTGACGATCTTAACCCTGGTCATTATCTT 544
Query 180 GTTTCTTTCGTCTTCGATGCCTTATTCGACGGCAGTTTCACTATCATATTTTTTGCA-AA 238
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| | ||
Sbjct 545 GTTTCCTTCGTCTTCGATGCCTTATTCGATGGCAGTTTCACTATCATATTTTTTGGAGAA 604
Query 239 GGAGGAATCAAACTGCACAATCGTCCCGGATTTACCAGAAGCTTTCCCACCGATCAAAGT 298
||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 605 -GAGGAATCAAAGTGCACAATCGTCCCTCATTTACCAGAAGCTTTCCCACCAATCAAAGT 663
Query 299 CCCTTT-CAAGAAAGGTACCGCGCAGAAGTTTCTACAAGCTCCAGGGACAGGAACCGACC 357
|||||| ||| |||||| ||| |||||||||||||||||||||||||||||||| |||||
Sbjct 664 CCCTTTCCAA-AAAGGTGCCGGGCAGAAGTTTCTACAAGCTCCAGGGACAGGAATCGACC 722
Query 358 TAGGCTTCTTTTCACTGGATGATCTATCGAAACCATCACCAGAAGAGGTGTACCCACTTG 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 723 TAGGCTTCTTTTCACTGGATGATCTATCGAAACCATCACCAGAAGAGGTGTACCCACTTG 782
Query 418 TAATATCAGCCGAGACAGTAATCTCACCAAGCTCGGTGTCAGATGAACCATTAGTTCATA 477
|||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||
Sbjct 783 TAATATCAGCCGAGACAGTAATATCACCAAGCTCGGTTTCAGAGGAACCATTAGTTCATA 842
Query 478 AGCAAATTACTCAAGCGTGTTT-GGAGAAGACTAATGATGGATCTTTCAAAGTGAAAGTC 536
|||| || ||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 843 AGCAGATCACTCAAGCG-GTTTTGGAGAAGACTAATGATGGATCTTTCAAAGTGAAAGTC 901
Query 537 ATGAAACAGATCCTATGGATTGAAGGAGATCGATATGAACTACGTGAGTTGTATGGAATC 596
||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 902 ATGAAACAGATTCTATGGATTGAAGGAGAACGATATGAACTACAAGAGTTGTATGGAATC 961
Query 597 GATAATTCAACCACACAAGGTAATGCTGCGTTGGGCTTAGAGGATACCGGTGACAAAGAA 656
|||||||||| ||||||||||| |||||| | ||| ||||||||||| |||| |||||||
Sbjct 962 GATAATTCAATCACACAAGGTACTGCTGCATCGGGGTTAGAGGATACTGGTGGCAAAGAA 1021
Query 657 TGTGTCATATGCTTGACTGAACCTAAGAACACAGCTGTCATGCCTTGTAGACATTTGTGT 716
|||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 1022 TGTGTCATTTGCTTGACTGAACCTAAGGACACAGCCGTCATGCCTTGTAGACATTTGTGT 1081
Query 717 TTGTGCAGTGACTGCGCAAAAGAACTGAGGTTTCAGTCAAACAAATGTCCCATTTGTAGA 776
||||||||||| |||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 1082 TTGTGCAGTGATTGCGCAGAAGAACTGAGGTTTCAGACAAACAAATGTCCCATTTGTAGA 1141
Query 777 CAACCTATCGC-TGAGCTTTTAGAGCTAAAAGTGGAAAGTAGTGATGAACAACACTGAAA 835
||||||||| | ||||||| || || | ||||||||||||||||||||||||||||||||
Sbjct 1142 CAACCTATC-CATGAGCTTGTAAAGATTAAAGTGGAAAGTAGTGATGAACAACACTGAAA 1200
Query 836 AAGAGGTTTCTTCCCTTC 853
||||||||||||||||||
Sbjct 1201 AAGAGGTTTCTTCCCTTC 1218
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41593873716
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5