BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941455
Length=1170
Score E
Sequences producing significant alignments: (Bits) Value
AT5G19150.1 | Symbols: | pfkB-like carbohydrate kinase family ... 1823 0.0
> AT5G19150.1 | Symbols: | pfkB-like carbohydrate kinase family
protein | chr5:6426071-6428467 REVERSE LENGTH=1372
Length=1372
Score = 1823 bits (987), Expect = 0.0
Identities = 1111/1168 (95%), Gaps = 19/1168 (2%)
Strand=Plus/Plus
Query 6 CTCAAC--GAGAATCTGATGTTGGTGAAGCATAGCT-TCATCTCTGGCCTGGGACGATTG 62
|||||| |||||||||||||||||||||| || | ||||||||||| ||| |||||||
Sbjct 49 CTCAACGAGAGAATCTGATGTTGGTGAAGCCCAG-TATCATCTCTGGCTTGGTACGATTG 107
Query 63 ACTTCTCACTCAACTTCTTCTTCTTCAAGTGTGATCAGAAGGCAACAGTTCTTGGTACGA 122
|||||||| ||| |||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 108 ACTTCTCATTCACCTTCTTCTTCTTCAAGTGTGCTCAGAAGGCAAGAGTTCTTGGTACGA 167
Query 123 ACGCTTTGTGGGTCACAAATTCATCGCCCCAAGCTCATCAGAGCAATGAGTTCAACATCA 182
|||||||||||| ||| |||| ||||||||||||||||||| ||||||
Sbjct 168 ACGCTTTGTGGG--------TCA-----CCAA--TCATCAGAGCAATGAGTTCCACATCA 212
Query 183 GAGGCCGACGCTGAGAGTGTCCTTAGAACCGTGACGCCATCGCTTGATCTCAAACGACAC 242
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 213 GAGGCCGACGCTGAGAGTGTTCTTAGAACCGTGACGCCATCGCTCGATCTCAAACGACAC 272
Query 243 AAAGGCCAAGCTGGGAAGATAGCTGTGATTGGAGGATGTCGTGAATACACTGGAGCTCCA 302
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 273 AAAGGCCAAGCTGGGAAGATAGCTGTGATTGGAGGATGTCGTGAATACACAGGAGCTCCA 332
Query 303 TACTTCGCCGCCATTTCAGCTTTGAAAATCGGTGCTGATTTATCTCATGTCTTCTGCACG 362
|||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 333 TACTTCGCTGCCATTTCAGCTTTGAAAATCGGTGCTGATTTGTCTCATGTATTCTGCACG 392
Query 363 AAAGACGCAGCTCCTGTTATAAAGAGCTATAGTCCTGAGCTTATAGTTCACCCTGTTCTT 422
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 393 AAAGATGCAGCTCCTGTTATAAAGAGCTATAGTCCTGAGCTTATAGTTCACCCTGTTCTT 452
Query 423 GAGGAATCATATAGCATCAGTCAACTCAGTGAAGAAGATCAAAGAAAAGTTCAAGATAAA 482
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 453 GAGGAATCATATAGCATCAGTCAACTCAGTGAAGAAGATAAAAGAGAAGTTCAAGATAAA 512
Query 483 GTGCTCGGGGAAGTCGATAAATGGATGGAAAGATTTGATTGCCTTGTTATTGGTCCTGGT 542
||||| || ||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 513 GTGCTTGGAGAAGTCGGTAAATGGATGGAAAGATTTGATTGTCTTGTTATTGGTCCTGGT 572
Query 543 TTGGGAAGAGATCCATTTCTCCTGGAATGTGTGAGTAAAATCATGCTACTTGCCAAAAAG 602
||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 573 TTGGGAAGAGATCCATTTCTCCTGGAATGTGTGAGTATTATCATGCTTCTTGCCAAAAAG 632
Query 603 TTCAATGTTCCTTTTGTTATAGATGGGGACGGGCTGTTTCTTGTAACAAATTCCATTGAT 662
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 633 TCCAATGTTCCTTTTGTTATAGATGGGGACGGGCTGTTTCTTGTAACAAATTCCATTGAT 692
Query 663 CTTGTCCACAGCTATCCGCTTGCTGTCTTAACCCCAAATGTGAACGAGTATAAGCGCCTG 722
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 693 CTTGTCCACAGCTATCCGCTTGCTGTCTTAACCCCAAATGTGAATGAGTATAAGCGCCTG 752
Query 723 GTTCAGAAAGTGCTGAATTGTGAAGTAGATGAACAAAATGCTGAAGATCAGTTACGTTCT 782
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 753 GTTCAAAAAGTACTGAATTGTGAAGTAGATGAACAAAATGCTGAAGATCAGTTACGTTCT 812
Query 783 TTGGCCAAACAGATTGGTGGTGTCACGATTCTCAGGAAAGGGAAATCTGATCTTATAAGC 842
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 813 TTGGCCAAACAGATTGGTGGTGTCACGATTCTCAGGAAAGGGAAATCTGATCTTATAAGC 872
Query 843 AATGGGAAGACAGTAAAATCAGTAAGCATATATGGTTCACCAAGGCGCTGCGGTGGACAA 902
|||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 873 AATGGGGAGACAGTAAAATCAGTAAGCATATATGGTTCACCAAGGCGCTGTGGTGGACAA 932
Query 903 GGCGATATTCTCTCTGGGGGTGTTGCAGTGTTTTTGTCATGGGCACGACAGCTTAAATCG 962
||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 933 GGCGATATTCTCTCTGGAGGTGTTGCAGTGTTTTTGTCATGGGCACAACAGCTTAAATCC 992
Query 963 GATCCTGAGAGTCCCTCTGAGAATCCAGCTATCTTGGGATGCATAGCTGCATCTGGCCTG 1022
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 993 GATCCTGAAAGTCCCTCTGAGAATCCAGCTATCTTGGGATGCATAGCTGCATCTGGCCTT 1052
Query 1023 CTGAGAAAGGCTGCATCTCTGGCCTTTACAAAACATAAGAGATCAACTCTCACAAGCGAC 1082
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1053 CTCAGAAAGGCTGCATCTCTGGCCTTTACAAAACATAAGAGATCAACTCTCACAAGCGAC 1112
Query 1083 ATTATCGAATGTTTAGGGGAGAGTTTGGAGGATATCTGCCCTGCATCTTAATCTCAGAAC 1142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1113 ATTATCGAATGTTTAGGGGAGAGTTTGGAGGATATCTGCCCTGCATCTTAATCTCAGAAC 1172
Query 1143 ACATGAAGTAGAGTTGTCTTGCCTACTA 1170
|||||||||||||||||||||||| |||
Sbjct 1173 ACATGAAGTAGAGTTGTCTTGCCTTCTA 1200
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57429423480
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5