BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941463
Length=1406
Score E
Sequences producing significant alignments: (Bits) Value
AT5G19180.1 | Symbols: ECR1 | E1 C-terminal related 1 | chr5:64... 2237 0.0
> AT5G19180.1 | Symbols: ECR1 | E1 C-terminal related 1 | chr5:6453276-6456014
FORWARD LENGTH=1728
Length=1728
Score = 2237 bits (1211), Expect = 0.0
Identities = 1342/1405 (96%), Gaps = 9/1405 (1%)
Strand=Plus/Plus
Query 6 CGCCACTCTCTCGGTTTCAATGGCTGATCTCGATGTTCCTCCTCAAGTTCCTCAAAGTAA 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 81 CGCCACTCTCTCGGTTTCAATGGCTGATCTCGATGTTCCTCCTCAAGTTCCTCAAAGTAA 140
Query 66 GACTAGAGACCTTGACAAGCTTCTTCTCCGTCATGGGAATCTCGTTGACCCCGGCTTCTT 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 141 AACTAGAGACCTTGACAAGCTTCTTCTCCGTCATGGGAATCTCGTTGACCCCGGCTTCGT 200
Query 126 TCCCGGACCCGACCTGAGAGATGACATAAGGGATTATGTGAGAATTC-TGGTGGTTGGTG 184
|||||||||| |||||| ||||||||||||||||||||||||| || ||||| ||||||
Sbjct 201 ACCCGGACCCGGCCTGAGGGATGACATAAGGGATTATGTGAGAA-TCTTGGTGATTGGTG 259
Query 185 CTGGTGGATTAGGTTGTGAGCTTCTCAAGGATTTGGCTCTTTCTGGTTTTCGTAATCTCG 244
| ||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 260 CGGGTGGGTTGGGTTGTGAGCTTCTCAAGGATTTAGCTCTTTCTGGTTTTCGTAATCTCG 319
Query 245 ATGTGATTGATATGGACCGTATTGAGGTTACTAATCTCAATCGCCAGTTCCTATTCAGGC 304
| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 320 AAGTGATTGATATGGACCGTATTGAGGTTACTAATCTCAATCGCCAGTTCCTGTTCAGGA 379
Query 305 TTGAAGATGTAGGAAAGCCTAAGGCAGAGGTAGCAGCAAAGCGTGTCATGGAGAGAGTGA 364
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 380 TTGAAGATGTAGGAAAGCCTAAGGCAGAGGTAGCAGCAAAGCGTGTAATGGAGAGAGTGA 439
Query 365 GTGGAGTGGAGATTGTGCCGCATTTTTCACGTATAGAAGACAAAGAGATTGAGTTTTATA 424
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 440 GTGGAGTAGAGATTGTGCCGCATTTTTCACGTATAGAAGACAAAGAGATTGAGTTTTATA 499
Query 425 GCGATTTTAATATCATTGCCCTTGGTCTTGATTCTATCGAAGCTCGCAAATACATCAATG 484
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 500 ACGATTTTAATATCATTGCTCTTGGTCTTGATTCTATCGAAGCTCGCAAATACATCAATG 559
Query 485 GGGTTGCTTGTGGGTTTCTTGAGTATAATGAAGATGATACTCCGAAAAGAGAAACAATCA 544
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 560 GGGTAGCTTGTGGGTTTCTTGAGTATAATGAAGATGATACTCCGAAAAGAGAAACGATCA 619
Query 545 AGCCGATGGTAGATGGGGGAACTGAAGGTTTCAAGGGTCATGCTAGAGTTATCTTGCCTG 604
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 620 AGCCAATGGTAGATGGGGGAACTGAAGGTTTCAAGGGTCATGCTAGAGTTATCTTGCCTG 679
Query 605 GAGTTACACCCTGTTTTGAGTGCACTATTTGGCTTTTCCCACCTCAAGTGAAGTTTCCGT 664
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 680 GAGTTACACCCTGTTTTGAGTGCACTATTTATCTTTTCCCACCTCAAGTGAAGTTTCCGT 739
Query 665 TGTGCACTCTTGCAGAAACCCCTAGGAATGCAGCTCATTGCATTGAATATGCTCATCTAA 724
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 740 TGTGCACTCTTGCAGAAACCCCTAGGAATGCAGCTCATTGCATTGAATATGCTCATCTTA 799
Query 725 TTCAGTGGGAAGCGGTTCATCGTGGAAAAACCTTTGATCCTGATGAGCCAGAACATATGA 784
||||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 800 TTCAGTGGGAAACGGTTCATCGTGGGAAAACCTTTGATCCTGATGAACCAGAACATATGA 859
Query 785 AGTGGGTCTATGATGAGGCTGTCAGGAGAGCTGAGCTTTTTGGGATTCCGGGTGTCACAT 844
||||||| |||||||||||| |||||||||||||||||||||| ||||| ||||||||||
Sbjct 860 AGTGGGTTTATGATGAGGCTATCAGGAGAGCTGAGCTTTTTGGAATTCCAGGTGTCACAT 919
Query 845 ACTCTCTCACACAAGGTGTGGTTAAAAACATAATACCGGCCATTGCTTCCACCAATGCAA 904
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 920 ACTCTCTCACACAAGGTGTGGTTAAAAACATAATACCGGCGATTGCTTCCACCAATGCGA 979
Query 905 TTATATCTGCAGCTTGTGCACTTGAAACCTTGAAGATCGTGTCTGCATGCAGCAAAACAC 964
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 980 TAATATCTGCAGCTTGTGCACTTGAAACCTTGAAGATTGTGTCTGCATGCAGCAAAACAC 1039
Query 965 TTGTAAATTATTTGGCGTATAACGGTGGAGAGGGTCTTCACACTGAAGTGACGAAGTTCC 1024
|||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 1040 TTGTAAATTATTTGACGTATAACGGTGGAGAGGGTCTTTACACTGAAGTGACAAAGTTCG 1099
Query 1025 AGCTGGACAGCGACTGTCTTGTATGTGGTCCGGGCATTCTGATTGAGCTGGACACCTCAG 1084
|| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1100 AGAGGGACACCGAATGTCTTGTATGTGGTCCGGGCATTCTGATTGAGCTGGACACCTCAG 1159
Query 1085 TCACTCTATCAAAGTTCATTGAGATGCTTGAAGATCATCCGAAGCTTCTATTGTCAAAAG 1144
||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1160 TCACTTTATCAAAGTTCATTGAGATGCTTGAAGATCACCCGAAGCTTCTATTGTCAAAAG 1219
Query 1145 CAAGTGTTAAACACGGGGAAAACACTCTCTACATGCAGGCACCTCCAATTCTAGAAGAGT 1204
||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1220 CAAGTGTTAAACAGGGGGAAAACACTCTCTACATGCAGGCACCTCCGGTTCTAGAAGAGT 1279
Query 1205 TTCACAGACCAAAGCTAAGCAAGCCGCTCTATGACCTCATGGGAAGAGTCCAGAAGGACA 1264
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1280 TTCACAGACCAAAGCTAAGCAAGCCGCTTTATGACCTCATGGGAAGAGTCCAGAAGGACA 1339
Query 1265 CTATCCATGTGTTTGGGACA--G--CCCTCAAGAACAACGAGAAAGAGTCGTGCTCAACG 1320
||||||| |||||||| ||| | ||||||||||||| ||||||||||||||| |||||
Sbjct 1340 CTATCCACGTGTTTGG-ACAAAGAGCCCTCAAGAACAATGAGAAAGAGTCGTGCACAACG 1398
Query 1321 AAGGTAAGAGTTGTTTTCAAAGGAGCCGATGGTGTTACAGACATGGATACAGCCATTGGA 1380
|||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1399 AAGGTAAGAGTTGTATTCAAAGGAGCCGATGGTGTTGCAGACATGGATACAGCCATTGGA 1458
Query 1381 GCATGAATAC--ACAGAGAAACCCT 1403
||||||| || |||||||||||||
Sbjct 1459 GCATGAAAACCGACAGAGAAACCCT 1483
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69276752100
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5