BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941471
Length=637
Score E
Sequences producing significant alignments: (Bits) Value
AT5G19250.1 | Symbols: | Glycoprotein membrane precursor GPI-a... 898 0.0
AT5G19230.1 | Symbols: | Glycoprotein membrane precursor GPI-a... 427 5e-119
AT5G19240.1 | Symbols: | Glycoprotein membrane precursor GPI-a... 392 2e-108
> AT5G19250.1 | Symbols: | Glycoprotein membrane precursor GPI-anchored
| chr5:6471906-6472945 FORWARD LENGTH=805
Length=805
Score = 898 bits (486), Expect = 0.0
Identities = 582/627 (93%), Gaps = 11/627 (2%)
Strand=Plus/Plus
Query 11 CTCTGCATCAATGGCGATTTCCAAGCTCCATCTACTCTTTCTTCTCTCAGTCTTTCTCTC 70
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 68 CTCTGCATCAATGGCGATCTCCAAGCTCCATCTACTCTTCCTTCTCTCAGTCTTTCTCTC 127
Query 71 CCTTCATCGTCTTGTTCTTTCCGACACCGCCGTTGAAGAAGATGCTCTTCGTACAGGCAT 130
|||||||| ||||||||||||||||||||||| ||||||||||| ||||| |||||||||
Sbjct 128 CCTTCATCCTCTTGTTCTTTCCGACACCGCCGATGAAGAAGATGTTCTTCTTACAGGCAT 187
Query 131 CAACAATTACAGAGCAGGACTAAACCTAACAACCTTAATACATAACGAAAACGCAGAATG 190
||||| |||||||||| |||||||||||||||||||||||| ||| | |||||||||||
Sbjct 188 CAACAGTTACAGAGCATCACTAAACCTAACAACCTTAATACACAACCACAACGCAGAATG 247
Query 191 TCTTGCAGACGAAATCGCAGACCAATTCAAGAACCAGCCTTGCACAAACACCACTGGCTC 250
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 248 TCTAGCAGACGAAATCGCAGACCAATTCAAGAACCAACCTTGCACAAACACCACTGGCTC 307
Query 251 ATTCTCAGTTCCTGGAACC-CAGCCTGGATTCCCAAACTTGCCTAAGCTCCTCTCCAAAT 309
| ||| || ||||||||| || ||||||||||||||||||||||| |||||||| ||||
Sbjct 308 AGCCTCTGTCCCTGGAACCACA-CCTGGATTCCCAAACTTGCCTAACCTCCTCTCAAAAT 366
Query 310 GCCGCCTCAACCCTACCGTTACTAGAGACGGTGCGATTTTGCCAGCTTGTGTTCCCAACC 369
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 367 GCCGCCTCAACCCTACCGTAACTAGAGACGGTGCGATTTTGCCAGCTTGTGTTCCCAACC 426
Query 370 TTGATCCAAGTCTTGTCTTGACCAATTTCACACA-GTCTCAGTACTCCAAGGACCTCAAT 428
||||||| || ||||||||||||||||||||| | ||| ||||||||||||||||| |||
Sbjct 427 TTGATCCTAGCCTTGTCTTGACCAATTTCACA-ATGTCACAGTACTCCAAGGACCTGAAT 485
Query 429 GATTCTAAGTTCACTGGAATTGGTATTGGTTCTGATGATAACTGGATTGTTGTCGTTCTC 488
||||||||||||||||| ||||||||||||||||||||||| ||||||||||| || |||
Sbjct 486 GATTCTAAGTTCACTGGTATTGGTATTGGTTCTGATGATAATTGGATTGTTGTTGTCCTC 545
Query 489 ACTACTAGCACACCGGAGGGTAGCTATTCTCCGGCCTCTAACTCGGGAGCTTTCTCGTTC 548
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 546 ACTACTAGCACACCGGAGGGTAGCTATTCTCCGGCCTCTAACTCAGGAGCTTTCGCGTTC 605
Query 549 GGAGTTAATGGCCTTGTTTCTTCGAgtttgatgatgatgtttcttctcttttgtttcttc 608
||||||||||||||||||||||| ||||||||| | | | ||||||||||| ||||||
Sbjct 606 GGAGTTAATGGCCTTGTTTCTTCAAGTTTGATG-T--T-T--CTTCTCTTTTGCTTCTTC 659
Query 609 atgttttgagtcccatttttgg-gttt 634
|||||||||||||| ||||||| ||||
Sbjct 660 ATGTTTTGAGTCCCTTTTTTGGTGTTT 686
> AT5G19230.1 | Symbols: | Glycoprotein membrane precursor GPI-anchored
| chr5:6467527-6468484 FORWARD LENGTH=826
Length=826
Score = 427 bits (231), Expect = 5e-119
Identities = 517/646 (80%), Gaps = 56/646 (9%)
Strand=Plus/Plus
Query 7 AAACCTCTGCATCAATGGCGATTTCCAAGCTCCATCTACTCTTTCTTCTCTCAGTCTTTC 66
|||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 96 AAACCTCTGCATCAATGGCGATTTCCAAACTCCATCTACTCTGTCTTCTCTCAGTCTTTC 155
Query 67 TCTCCCTTCATCGTCTTGTTCTTTCCGACACCGCCGTTGAAGAAGATG-C-T-CTTCGTA 123
||||||||||||||||||||||||||| ||||| | || ||||||| | | |||| ||
Sbjct 156 TCTCCCTTCATCGTCTTGTTCTTTCCGGCACCGATG--GA-GAAGATGACCTTCTTCTTA 212
Query 124 CAGGCAT-CAACAATTACAGAGCAGGACTAAACCTAACAACCTTAATACATAACGAAAAC 182
||| || |||||| |||||| ||||||||||||||| |||||||| | | |||||||||
Sbjct 213 CAGT-ATTCAACAAATACAGAACAGGACTAAACCTAAAAACCTTAACAAAGAACGAAAAC 271
Query 183 GCAGAATGTCTTGCAGACGAAATCGCAGACCAATTCAAGAACCAGCCTTGCACAAACACC 242
||||||||||| ||||||||| ||| ||||||| | |||||||| || |||||||||||
Sbjct 272 GCAGAATGTCTCGCAGACGAAGTCGTAGACCAACTAAAGAACCAACCCTGCACAAACACT 331
Query 243 ACTGGCTCATTCTCAGTTCCTGGAACCCAGCCTGGATTCCCAAACTTGCCTAAGCTCCTC 302
| | | ||||| ||| | ||| |||| || | || ||||||
Sbjct 332 AATA----A--CTCAGCTCCAGT--CCC----TGGA-----AA--T-----AACCTCCTC 367
Query 303 TCCAAATGCCGCCTCAACCCTACCGTTACT-AGAGACGGTGCGATTTTGCCAG-CTTGTG 360
| |||||| | |||||| | ||||| | | |||||||||| ||| ||| || || ||
Sbjct 368 GCTAAATGCAGTCTCAACACAACCGT-AGTCAGAGACGGTGTGATCATGCAAGTCT-GTT 425
Query 361 TTCCCAACCTTGATCC-AAGTCTTGTCTTGACCAATTTCACACAGTCTCAGTACTCCAAG 419
|||| || | |||| || || | ||||| |||||||| ||||| || |||||| |||
Sbjct 426 TTCCTAAGCATGATAAGAACCCT-GACTTGAGCAATTTCA-ACAGTGTC-GTACTC-AAG 481
Query 420 GACCTCAATGATTCTAAGTTCACTGGAATTGGTATTGGTTCTGATGATAACTGGATTGTT 479
|| | |||||||||||| |||||||||||||||||||||||| ||||| ||| |||||
Sbjct 482 AACTTGAATGATTCTAAGATCACTGGAATTGGTATTGGTTCTGGTGATATTTGGGTTGTT 541
Query 480 GTCGTTCTCACTACTAGCACACCGGAGGGTAGCTATTCTCCGG---C--CT-CTAACTCG 533
||| | |||||||| | ||||||||| || ||||||||| | || |||||||
Sbjct 542 GTCATCCTCACTACAAACACACCGGAAGGCGGCTATTCTCTTTTAACAACTACTAACTCA 601
Query 534 GGAGCTT-TCTCGTTCGGAGTTAATGGCCTTGTTTCTTCGAgtttgatgatgatgtttct 592
||||||| | | |||||||||||||||||||||||||| ||||| | || | || ||
Sbjct 602 GGAGCTTATG-CATTCGGAGTTAATGGCCTTGTTTCTTCAAGTTTC-T--TG-T-TT-CT 654
Query 593 tctcttttgtttcttcatgttttgagtcccatttttgg-gtttttt 637
|||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 655 TCTCTTTTGTTTCTTCATGTTTTGAGTCCCTTTTTTGGTGTTTTTT 700
> AT5G19240.1 | Symbols: | Glycoprotein membrane precursor GPI-anchored
| chr5:6470129-6471062 FORWARD LENGTH=761
Length=761
Score = 392 bits (212), Expect = 2e-108
Identities = 469/588 (80%), Gaps = 38/588 (6%)
Strand=Plus/Plus
Query 10 CCTCTGCATCAATGGCGATTTCCAAGCTCCATCTA---CTCTTTCTTCTCTCAGTCTTTC 66
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 70 CCTCTGCATCAATGGCGATTTCCAAGCTCCATCTAGTACTCTTTCTTCTCTCAGTCTTTC 129
Query 67 TCTCCCTTCATCGTCTTGTTCTTTCCGACACCGCCGTTGAAGAAGATGCTCTTCGTACAG 126
|||| |||||||||| |||||||||| |||||| | ||| || | || || |||||
Sbjct 130 TCTCTCTTCATCGTCCTGTTCTTTCCAACACCGATGGAGAA-AACCTTCTATT--TACAG 186
Query 127 GCAT-CAAC-AATTACAGAGCAGGACTAAACCTAACAA-CCTTAATACATAACGAAAACG 183
|| |||| ||| |||||| | | ||||||| |||| ||| || | | ||| ||||||
Sbjct 187 T-ATTCAACCAAT-ACAGAGAATCAGTAAACCTCACAAACCTAAAAA-AGAACAAAAACG 243
Query 184 CAGAATGTCTTGCAGACGAAATCGCAGACCAATT-CAAGAACCAGCCTTGCACAAACACC 242
|||||||||| ||||||||| ||| ||||||||| || |||||| || ||||||||||||
Sbjct 244 CAGAATGTCTAGCAGACGAAGTCGTAGACCAATTACA-GAACCAACCCTGCACAAACACC 302
Query 243 ACTGGCTCATTCT-CAGTTCCTGGAACCCAGCCTGGATTCCCAAACTTGCCTAAGCTCCT 301
||||||||| || |||| |||||||| | |||||| ||||||| || ||||| |||||
Sbjct 303 ACTGGCTCAG-CTTCAGTCCCTGGAACAGATCCTGGAATCCCAAATTTCCCTAACCTCCT 361
Query 302 CTCCAAATGCCGCCTCAACCCTACCGTTACTAGAGACGGTGCGATTTTGCCAGCTTGTGT 361
| | ||||||||||||||| | | ||| || ||||||||| ||| |||| || |||||
Sbjct 362 CGCTAAATGCCGCCTCAACACAAACGTAACCAGAGACGGTTTGATATTGCAAGTTTGTGC 421
Query 362 TCCCAACCTTGATCCAAGTCTTGTCTTGACCAATTTCACACAGTCTCAGTACTCCAAGGA 421
||| || | | || | | | || ||||| || |||| | || | || || | ||| |
Sbjct 422 TCCTAAGCATCATTCGACCCCTGACTTGAGCAGTTTCGC-CAATGTCT-TAA-CAAAGAA 478
Query 422 CCTCAATGATTCTAAGTTCACTGGA-----A-TTGGTATTGGTTCTGATGATAACTGGAT 475
||| ||||||||||||||||||||| | ||||||||| |||||||| || ||| |
Sbjct 479 CCTGAATGATTCTAAGTTCACTGGAGCTGGAGTTGGTATTGATTCTGATGGTATTTGGCT 538
Query 476 TGTTGTCGTTCTCACTACTAGCACACC-GGAGGGTAGCTATTCTCCGGCCTCTAACTCGG 534
|||| ||| |||||||| | |||||| || ||||||||||||| ||||| |
Sbjct 539 TGTTACCGTCCTCACTACAAACACACCAGG-GGGTAGCTATTCT---------AACTCAG 588
Query 535 GAGCTTTCT-CGTTCGGAGTTAATGGCCTTGTTTCTTCGAgtttgatg 581
||||||| | | |||||||||||||||||||||||||| |||||||||
Sbjct 589 GAGCTTT-TGCATTCGGAGTTAATGGCCTTGTTTCTTCAAGTTTGATG 635
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30743297964
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5