BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941476
Length=1024
Score E
Sequences producing significant alignments: (Bits) Value
AT5G19290.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 1555 0.0
> AT5G19290.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr5:6494055-6495284 FORWARD LENGTH=1230
Length=1230
Score = 1555 bits (842), Expect = 0.0
Identities = 945/996 (95%), Gaps = 1/996 (0%)
Strand=Plus/Plus
Query 1 TTTTGGGGGaaaaaaaacaaaaaaTGGGTTTGCATCCAATTTCCGACGCCAACGAACACA 60
|||||| || |||||| || |||||||| ||||||||||||||||||||||| |||||||
Sbjct 37 TTTTGGTGG-AAAAAACCAGAAAATGGGGTTGCATCCAATTTCCGACGCCAATGAACACA 95
Query 61 ATCCCTTCGGATCTCTCACCGCCGACGAATTCTACGCCAAACATTCCGTTAGCCACTCCT 120
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 96 ATCCCTTCGGCTCTCTCACCGCCGACGAATTCTACGCCAAACATTCCGTTAGCCACTCCT 155
Query 121 CCGCTTTCATCACCAACCCTCGTGGTCTCAAGCTCTTCACTCAATGGTGGTCACCACTCC 180
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 156 CCGCTTTCATCACCAACCCTCGCGGTCTCAAACTCTTCACTCAATGGTGGTCACCACTCC 215
Query 181 CTCCAACTAAACCAATCGGTATCATCGCCGTCGTTCACGGCTTCACCGGCGAAACCAGCT 240
|||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||| |
Sbjct 216 CTCCAACTAAACCAATCGGTATCATCGCTGTCGTTCATGGCTTCACCGGCGAATCCAGTT 275
Query 241 GGTTCCTCCAGCTCACATCAATCCTTTTCGCTAAATCCGGTTTCATCACTTGCGCAATTG 300
||||||| ||||||||||||||||| |||||||||||||||||||| || ||||||||||
Sbjct 276 GGTTCCTTCAGCTCACATCAATCCTCTTCGCTAAATCCGGTTTCATAACCTGCGCAATTG 335
Query 301 ATCACCAAGGCCATGGATTCTCCGATGGACTCATCGCTCATATCCCTGACATCAATCCCG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 336 ATCACCAAGGCCATGGATTCTCCGATGGACTCATCGCTCATATCCCTGACATCAATCCCG 395
Query 361 TCGTCGATGACTGTATCTCTTTCTTCGATGACTTTCGTAGCCGTCAATCGCCGTCAGATC 420
|||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||||
Sbjct 396 TCGTCGATGACTGTATCTCTTTCTTCGATGACTTCCGTAGCCGTCAAACACCGTCAGATC 455
Query 421 TGCCGTGTTTTCTTTACTCTGAATCTCTAGGCGGCGCGATTGCTCTCTATATCTCGCTCC 480
||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||| |
Sbjct 456 TGCCGTGTTTTCTCTACTCTGAATCCCTAGGCGGCGCGATTGCTCTCTACATCTCGCTTC 515
Query 481 GTCAGAGAGGTGTTTGGGATGGGCTTATCCTCAACGGAGCTATGTGTGGAATCAGCGATA 540
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 516 GTCAGAGAGGTGTTTGGGATGGACTTATCCTCAACGGAGCTATGTGTGGAATCAGCGATA 575
Query 541 AATTCAAACCGCCGTGGCCGTTGGAGCATTTGCTCTTCGTCGTCGCGAATCTTATCCCTA 600
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 576 AATTCAAACCGCCGTGGCCGTTGGAGCATTTGCTATTCGTCGTCGCGAATCTTATCCCTA 635
Query 601 CCTGGCGCGTTATCCCTACGCGCGGATCTATTCCCGATGTTTCTTTCAAGGAGGCTTGGA 660
| |||||||||||||| || ||||||||||||||||||||||| ||||||||| | ||||
Sbjct 636 CTTGGCGCGTTATCCCCACTCGCGGATCTATTCCCGATGTTTCGTTCAAGGAGCCGTGGA 695
Query 661 AGAGGAAGCTTGCGATGGCTAGCCCTAGAAGGACGGTGGCGAGACCACGCGCCGCCACGG 720
||||||||||||| ||||||||||| || ||||||||||||| |||||| ||||| || |
Sbjct 696 AGAGGAAGCTTGCCATGGCTAGCCCAAGGAGGACGGTGGCGAAACCACGGGCCGCTACTG 755
Query 721 CTTATGAGCTGATTCGTGTCTGTAAGGATCTGCAGGAGAGGTTTGAGGAAGTGGAGGTTC 780
||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 756 CTTATGAGCTGATTCGTGTTTGTAAGGATCTGCAGGGGAGGTTTGAGGAAGTGGAGGTTC 815
Query 781 CGCTTCTGATTGTGCACGGCGGAGGCGATGTAATCTGCGACGTGGCGTGTGTAGAGGAGC 840
||||||||||||||||||||||||| ||||| | |||||||| |||||||| |||||||
Sbjct 816 CGCTTCTGATTGTGCACGGCGGAGGTGATGTTGTATGCGACGTAGCGTGTGTTGAGGAGC 875
Query 841 TTCATCGGAGAGCGATTAGTGAGGATAAGACGATCAAGATCTACCCTGAGCTGTGGCATC 900
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 876 TTCATCGGAGAGCGATTAGTGAGGATAAGACGATCAAGATCTACCCTGAGTTGTGGCATC 935
Query 901 AGATGATTGGGGAATCGGAGGAGAAAGTCGATCTAGTTTACGGTGACATGCTGAGCTGGC 960
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 936 AGATGATTGGGGAATCGGAGGAGAAAGTCGATCTGGTTTACGGTGATATGCTGAGCTGGC 995
Query 961 TCAAGAGTCGAGCGGAAAGGAAGGCACGCGCCGCCG 996
||||||||||||| ||||||||||||||||||||||
Sbjct 996 TCAAGAGTCGAGCTGAAAGGAAGGCACGCGCCGCCG 1031
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50183912853
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5