BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941477
Length=1186
Score E
Sequences producing significant alignments: (Bits) Value
AT5G19300.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Nucleic a... 1578 0.0
> AT5G19300.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Nucleic
acid-binding, OB-fold-like (InterPro:IPR016027), Protein of
unknown function DUF171 (InterPro:IPR003750); Has 3649 Blast
hits to 1964 proteins in 291 species: Archae - 113; Bacteria
- 121; Metazoa - 1082; Fungi - 399; Plants - 227; Viruses
- 4; Other Eukaryotes - 1703 (source: NCBI BLink). | chr5:6495576-6498214
FORWARD LENGTH=1441
Length=1441
Score = 1578 bits (854), Expect = 0.0
Identities = 917/948 (97%), Gaps = 1/948 (0%)
Strand=Plus/Plus
Query 228 gaggaggaaaagcgaaatgtagaagaCGGTAGAGCCACTGTTAGCATAGCCATAGCTGGT 287
|||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 276 GAGGAGGAAAAGGGAAATGTAGAAGAGGGTAGAGCCACTGTTAGCATAGCCATAGCTGGT 335
Query 288 TCAATCATCCACAACACTCAATCACTCGAGCTCGCTACACGCCTCGCCGGCCAAATTGCT 347
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 336 TCAATCATCCACAACACTCAATCACTTGAGCTCGCCACACGCCTCGCCGGCCAAATTGCT 395
Query 348 CGTGCAGCTACAATTTTCCGAATCGACGAGATTGTAGTGTTCGACAATAAGAGCAGCTCA 407
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 396 CGTGCAGCTACAATTTTCCGAATCGACGAGATCGTAGTGTTCGACAATAAGAGCAGCTCA 455
Query 408 GAAATCGAATCAGCTGCTATGAATCCTTCTGATAGCAATGAAAGTGGTGCCTCCTTTCTC 467
||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 456 GAAATCGAATCAGCTGCTACGAATGCTTCTGATAGCAATGAAAGTGGTGCCTCCTTTCTC 515
Query 468 GTTCGTATCTTGAAGTATCTAGAGACACCACAATATTTGAGGAAATCTCTCTTCCCCAAG 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 516 GTTCGTATCTTGAAGTATCTAGAGACACCACAATATTTGAGGAAATCTCTCTTCCCCAAG 575
Query 528 CAAAATGATCTTAGATATGTGGGTATGTTGCCACCTCTTGATGCTCCTCACCATCTGCGT 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 576 CAAAATGATCTTAGATATGTGGGTATGTTGCCACCTCTTGATGCTCCTCACCATCTGCGT 635
Query 588 AAGCACGAGTGGGAACAATACCGTGAAGGTGTCACACTGAGTGAAAAGGCTCCAAACTCT 647
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 636 AAGCACGAGTGGGAACAATACCGTGAAGGTGTGACACTGAGTGAAAAGGCTCCAAATTCT 695
Query 648 GACGCTACAATGGTTGATGTGGGTTTAAGCAAGAGTGTTGTTGTTGATCAAGTGCTGAGT 707
|| | |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 696 GAGGGTACATTGGTTGATGTGGGTTTAAGCAAGAGTGTTGTTGTTGATCAAGTGCTGGGT 755
Query 708 CCAGGAGTTAGAGTCACGGTAGCCATGGGAACTGACCACGATTTAGATTTGGTACGCCAG 767
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 756 CCAGGAATTAGAGTCACGGTAGCCATGGGAACTGACCACGATTTAGATTTGGTACGCCAG 815
Query 768 ATTGTTCCGCCCTCTAAGCCAAGGGAAGAAGCAGGAATGTATTGGGGATACAAAGTACGA 827
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 816 ATTGTTCCACCCTCTAAGCCAAGGGAAGAAGCAGGAATGTATTGGGGATACAAAGTACGA 875
Query 828 TATGCATCACAATTAAGTTCAGTATTCAAGGAATGTCCTTTCCAGGGTGGATACGATTAC 887
||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||||
Sbjct 876 TATGCATCACAATTAAGTTCAGTATTCAAGGAATGCCCTTTCGAGGGTGGTTACGATTAT 935
Query 888 TTGATCGGTACCTCGGAACACGGATTGGTTATTAGTTCATCAGAGCTGAAAATACCAACA 947
||||| ||||||||||| ||||| |||| ||||||||||| ||||||||||||||||||
Sbjct 936 TTGATTGGTACCTCGGAGCACGGCCTGGTAATTAGTTCATCTGAGCTGAAAATACCAACA 995
Query 948 TTTAGGCACCTATTGATTGCATTTGGTGGACTTGCTGGGCTTGAAGAAAGTATTGAAGAT 1007
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 996 TTTAGGCACCTATTGATTGCATTTGGTGGACTTGCTGGGCTTGAAGAAAGTATTGAAGAT 1055
Query 1008 GATAACCAGTATAAGGGGAAAAACGTGCGAGATGTGTTTAATATATACTTGAATACTTGT 1067
||||| |||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 1056 GATAATCAGTATAAGGGGAAAAACGTTCGAGATGTGTTTAATGTATACTTGAATACTTGT 1115
Query 1068 CCACATCAAGGAAGCCGAACCATTCGAGCAGAGGAAGCGATGTTTATATCACTTCAGTAC 1127
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1116 CCACATCAAGGTAGCCGAACCATTCGAGCAGAGGAAGCGATGTTTATATCACTTCAGTAC 1175
Query 1128 TTCCAAGAACCCATCAGCAGGGCAGTGAGAAGACTTTAAGCTT-GATA 1174
||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1176 TTCCAGGAACCCATCAGCAGGGCAGTGAGAAGACTTTAAGCTTCGATA 1223
Score = 326 bits (176), Expect = 4e-88
Identities = 222/242 (92%), Gaps = 12/242 (5%)
Strand=Plus/Plus
Query 4 ACTCGCCGGCGGCAGAAATGGGGAAGAAGAACAAGAGAAGTCAAGACGAGCCTGAGCTCG 63
|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 ACTCGCCGGCGGCAGAGATGGGGAAGAAGAACAAGAGAAGTCAAGACGAGTCTGAGCTCG 60
Query 64 AATTGGAGCCAGAGCTAACGAAAATAATCGACGGAGACTCTAAAaagaag------aaga 117
||||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 61 AATTGGAGCCAGAGCTAACGAAAATAATCGATGGAGACTCTAAAAAGAAGAAAAATAAGA 120
Query 118 ataagaagaagagaagCCATGAAGATACGGAGATAGAACCGGAGCAAAAGATGAGTCTCG 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ATAAGAAGAAGAGAAGCCATGAAGATACGGAGATAGAACCGGAGCAAAAGATGAGTCTCG 180
Query 178 ACGGAGAGGCgaagaaggagaaga-a--gaagaagaagaagaaaaag--c-aagaggagg 231
||||||| ||||| ||||||||| | |||||||| |||||| ||| | |||||||||
Sbjct 181 ACGGAGACTCGAAGGAGGAGAAGATAAAGAAGAAGAGGAAGAACAAGAACCAAGAGGAGG 240
Query 232 ag 233
||
Sbjct 241 AG 242
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58232632200
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5