BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941479
Length=1675
Score E
Sequences producing significant alignments: (Bits) Value
AT5G19320.1 | Symbols: RANGAP2 | RAN GTPase activating protein ... 2527 0.0
> AT5G19320.1 | Symbols: RANGAP2 | RAN GTPase activating protein
2 | chr5:6505110-6507435 REVERSE LENGTH=2009
Length=2009
Score = 2527 bits (1368), Expect = 0.0
Identities = 1578/1679 (94%), Gaps = 16/1679 (1%)
Strand=Plus/Plus
Query 8 TCTGGATTTGTGATTATGGCTGATACACTTGATTCCCGACCTCATGCATTTTCGATTAAA 67
|||||||||| ||| |||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 157 TCTGGATTTGCGATAATGGCTGATATACTTGATTCTCGACCTCATGCATTTTCGATTAAA 216
Query 68 CTCTGGCCACCGAGTTTACCTACAAGAAAAGCTCTCATTGAGCGCATTACCAACAATCTC 127
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |
Sbjct 217 CTCTGGCCACCGAGTTTACCTACAAGAAAAGCTCTCATTGAGCGTATAACCAACAATTTT 276
Query 128 TCTTTAAAGACCATTTTTACTGAAAAGTACGGTAGCTTAACCAAAGACCAGGCTATGGAG 187
|||| ||||| ||||| ||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 277 TCTTCCAAGACTATTTTCACTGAGAAGTACGGTAGCTTAACCAAAGACCAGGCTACGGAG 336
Query 188 GATGCTAAGAGGATCGAGGACT-TTGCTTTTTCCACTGCTAACCAACAGTTTGAGAGGGA 246
| |||||||||||||| || | |||||||||||||||||||||||||||||||||||||
Sbjct 337 AACGCTAAGAGGATCGAAGA-TATTGCTTTTTCCACTGCTAACCAACAGTTTGAGAGGGA 395
Query 247 ACCTGATGGTGATGGCGGTTCTGCTGTACAGCTTTATGCTAAAGAATGCAGTAAGCTCAT 306
|||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||| ||
Sbjct 396 GCCTGATGGTGATGGTGGTTCAGCTGTACAGCTTTATGCCAAAGAATGCAGTAAGCTTAT 455
Query 307 CTTGGAAGTTCTCAAGAAAGG-CC-----CT---GTTGCCACTAGAGAATTGATTTCTGA 357
||| ||||||||||||||||| || || ||||| | |||||||||||||||||
Sbjct 456 CTTAGAAGTTCTCAAGAAAGGACCTGTTGCTAAAGTTGCGGCAAGAGAATTGATTTCTGA 515
Query 358 GGATTCTTCTGCGTCTCCCCGTGAATCTTTTTTCGATATTTCTAAAGGCCAAA-GGGCTT 416
||| ||||| ||||||||| ||| |||||||||||||||||||||| ||| ||||||
Sbjct 516 GGA---TTCTGTGTCTCCCCGCGAAACTTTTTTCGATATTTCTAAAGG-TAAACGGGCTT 571
Query 417 TCATTGAGGCTGACGAGGCTGACGAGCTTCTCAAACCTTTGAAGGAACCTGGCAATGCTT 476
||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 572 TCATTGAGGCTGAGGAAGCTGAGGAGCTTCTCAAACCTTTGAAGGAACCTGGCAATGCCT 631
Query 477 ACACTAAGATATGCTTTAGCAATAGGAGTTTCGGCTTAGGAGCTGCTCGTGTCGCTGAGC 536
||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||
Sbjct 632 ACACTAAGATATGCTTTAGTAATAGGAGTTTTGGCTTGGGAGCTGCTCGTGTCGCTGAGC 691
Query 537 CTATCTTGGCGTCTCTGAAAGATCAGCTTAAGGAAGTTGACTTGTCCGACTTTGTTGCTG 596
|||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 692 CTATCTTGGCGTCTTTGAAAGATCAGCTTAAGGAAGTTGACTTGTCTGACTTTGTTGCTG 751
Query 597 GACGACCCGAGGTTGAAGCTCTTGAGGTTATGAATATATTTTCTGACGCACTGCAGGGTA 656
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 752 GACGACCTGAGCTTGAAGCTCTTGAGGTTATGAATATATTTTCTGACGCACTGCAAGGTA 811
Query 657 GTATTCTCTCCTCTCTCAACTTATCTGAGAATGCATTGGGTGAGAAGGGTGTTAGAGCAT 716
|||||||||| |||||||||||||| || ||||||||||||||||||||||||||||| |
Sbjct 812 GTATTCTCTCGTCTCTCAACTTATCAGATAATGCATTGGGTGAGAAGGGTGTTAGAGCGT 871
Query 717 TTGGGGCACTCTTAAAATCTCTGAGCTCTTTGGAAGAGCTGTATTTGATGAACGATGGTA 776
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 872 TTGGGGCACTCTTAAAATCTCTGAGCTCTTTGGAAGAGCTGTATTTGATGAATGATGGTA 931
Query 777 TCTCTAAGGAAGCTGCACAAGCGGTCTCTGAGTTGATTCCTTCAACAGATAATTTGAGGG 836
|||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 932 TCTCTAAGGAAGCTGCGCAAGCGGTCTCCGAGTTGATTCCTTCAACAGAGAATTTGAGGG 991
Query 837 TCCTTCATTTTCATAATAACATGACGGGAGATGAAGGGGCACTCGCAATTGCAGAGGTTG 896
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 992 TCCTTCATTTTCATAATAACATGACGGGAGATGAAGGGGCACTCGCTATTGCAGAGGTTG 1051
Query 897 TCAAGCGTTCGCCACTGCTGGAGAATTTCCGGTGTTCTTCCACAAGAGTCGGCTCAGAAG 956
|||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 1052 TCAAGCGTTCCCCACTGCTGGAGAATTTCCGTTGTTCTTCCACAAGAGTCGGCTCAAAAG 1111
Query 957 GGGGAATCGCCTTATCAGAAGCACTTGAGCATTGTACTCATATGGAGAAACTTGATGTGC 1016
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1112 GGGGAATCGCCTTGTCAGAAGCACTTGAGCATTGTACTCATATGGAGAAACTTGATCTGC 1171
Query 1017 GGGATAATATGTTTGGCACAGAAGCCGGAGTTTCTCTGAGCAAAACTTTTTCAAGCTTCA 1076
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 1172 GGGATAATATGTTTGGCACAGAAGCCGGAGTTTCTTTGAGCAAAACTCTTTCAAGCTTCA 1231
Query 1077 AACACTTGACTGAGCTTTACTTGAGTTATCTTAATCTAGAGGATGAAGGTGCCATAGCCA 1136
||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1232 AACACATGACTGAGCTTTACTTGAGTTATCTAAATCTAGAGGATGAAGGTGCCATAGCCA 1291
Query 1137 TAGTAAACGCTCTAAAGGAGTCTGCTTCACCCATTGAAGTTCTAGAGATGGCAGGAAATG 1196
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1292 TAGTAAACGCTCTAAAGGAGTCTGCTTCGCCCATTGAAGTTCTAGAGATGGCAGGAAATG 1351
Query 1197 ACATAACAGTTGAAGCTGCTTCAGCTATCGCAGCCTGTGTAGCAGCAAAACAAGATCTGA 1256
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1352 ACATAACAGTTGAAGCTGCTTCAGCTATCGCAGCCTGTGTTGCAGCAAAACAAGATCTGA 1411
Query 1257 AAAAGTTGAATTTGTCTGAGAATGAGCTGAAAGATGAGGGATGTGTCCAGATTGCAAAGA 1316
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1412 ACAAGTTGAATTTGTCTGAGAATGAGCTGAAAGATGAGGGATGTGTCCAGATTGCAAATT 1471
Query 1317 GTATGGAGGAGGATCATTCGAAATTGCAATACATCGATATGAGCACGAATTACATAAGAA 1376
|||| || |||| ||| || ||| |||||||||||||||||||||| || ||||||||||
Sbjct 1472 GTATAGAAGAGGGTCACTCAAAACTGCAATACATCGATATGAGCACCAACTACATAAGAA 1531
Query 1377 GAGCCGGAGCACGGGCCTTGGCTCATCTTGTTGTTAAGAAAGAAGCTTTCAAGCTGTTGA 1436
||||||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 1532 GAGCCGGAGCACGAGCCTTGGCTCATGTTGTTGTGAAGAAAGAAGCTTTCAAGCTGTTGA 1591
Query 1437 ACATCGACGGGAACATCATATCAGAAGAAGGCATTGAAGAATTGAAAGAGATATTCAAGA 1496
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1592 ACATTGACGGGAACATCATATCAGAAGAAGGCATTGAAGAATTGAAAGAGATATTCAAGA 1651
Query 1497 AATCTCCAGAATTACTTGGAGCTTTGGACGagaatgatcctgatggagaagaagaagaag 1556
|||| ||||| ||||||||||||||||| |||||||||||||||||||||||||| || |
Sbjct 1652 AATCCCCAGAGTTACTTGGAGCTTTGGATGAGAATGATCCTGATGGAGAAGAAGATGATG 1711
Query 1557 atgatgaggaagacgaagaagatgaagagaacgaagGTAACGGAAATGGTGAGCTGGAAT 1616
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1712 ATGATGAGGAAGACGAAGAAGATGAAGAGAACGAAGGTAATGGGAATGGTGAGCTGGAAT 1771
Query 1617 CAAAGCTGAAGAACCTTGAAGTTAATCAGGAAGATTAAGTCTGTGATGTTGGTACTTTT 1675
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1772 CGAAGCTGAAGAACCTTGAAGTTAATCAGGAAGATTAAGTCTGTGATGTTGGTACTTTT 1830
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82780698705
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5