BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941503
Length=1060
Score E
Sequences producing significant alignments: (Bits) Value
AT5G19530.1 | Symbols: ACL5 | S-adenosyl-L-methionine-dependent... 1738 0.0
> AT5G19530.1 | Symbols: ACL5 | S-adenosyl-L-methionine-dependent
methyltransferases superfamily protein | chr5:6588958-6591211
REVERSE LENGTH=1358
Length=1358
Score = 1738 bits (941), Expect = 0.0
Identities = 1023/1062 (96%), Gaps = 7/1062 (1%)
Strand=Plus/Plus
Query 1 TTCTCTCTCAGAACTTGGATATGGGTGAAGCCGTAGAGATCATGTTCGGAAATGGATTCC 60
||||| ||| ||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 104 TTCTC-CTC--AACTTGGATATGGGTGAAGCCGTAGAGGTCATGTTCGGAAATGGGTTCC 160
Query 61 CAGAGATTCACAAAGACACATCACCCATTCAAACCCTCCACTCCAACCAGCAGGACTGCC 120
| ||||||||||||| ||||||||||| ||||||||||||||| |||||||| |||||||
Sbjct 161 CGGAGATTCACAAAGCCACATCACCCACTCAAACCCTCCACTCTAACCAGCAAGACTGCC 220
Query 121 ATTGGTATGAAGAAACCATCGATGATGATCTCAAGTGGTCTTTTGCCCTCAACAGTGTTC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 221 ATTGGTATGAAGAAACCATCGATGATGATCTCAAGTGGTCTTTTGCCCTCAACAGTGTTC 280
Query 181 TCCATCAAGGAACTAGTGAGTACCAAGATATTGCTCTGTTGGATACCAAACGTTTTGGAA 240
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 281 TCCATCAAGGAACTAGTGAGTACCAAGATATTGCTCTGTTGGACACCAAACGTTTTGGAA 340
Query 241 AGGTGCTTGTGATTGATGGGAAAATGCAAAGTGCAGAGAGAGATGAGTTTATCTACCATG 300
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 341 AGGTGCTTGTGATTGATGGGAAAATGCAAAGTGCTGAGAGAGATGAGTTTATCTACCATG 400
Query 301 AATGTTTGATCCA-CCCGGCCCTCCTTTTCCATCCCAACCCCAAGACGGTGTTTATAATG 359
||||||||||||| |||| | |||||||||||||||||||||||||| ||||||||||||
Sbjct 401 AATGTTTGATCCATCCCG-CTCTCCTTTTCCATCCCAACCCCAAGACTGTGTTTATAATG 459
Query 360 GGAGGAGGTGAAGGCTCTGCTGCTAGAGAAATACTAAAACACACGACGATCGAGAAAGTT 419
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 460 GGAGGAGGTGAAGGCTCTGCTGCAAGAGAAATACTAAAACACACGACGATCGAGAAAGTT 519
Query 420 GTCATGTGTGATATTGATCAGGAAGTTGTTGACTTTTGCAGAAGATTTCTGACCGTTAAC 479
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 520 GTTATGTGTGATATTGATCAGGAAGTTGTTGATTTTTGCAGAAGATTTCTGACCGTTAAC 579
Query 480 AGCGATGCTTTCTGTAACAAAAAGCTTGAACTTGTGATCAAAGATGCAAAGGCTGAATTG 539
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 580 AGCGATGCTTTCTGTAACAAAAAGCTTGAACTTGTGATCAAAGATGCAAAGGCTGAATTA 639
Query 540 GAGAAAAGAGAAGAGAAGTTTGATATCATAGTAGGAGATTTAGCCGATCCAGTGGAAGGT 599
|||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 640 GAGAAAAGGGAAGAGAAGTTTGATATCATAGTGGGAGATTTAGCTGATCCAGTGGAAGGT 699
Query 600 GGACCTTGTTATCAGCTCTACACGAAATCCTTCTACCAAAACATCCTCAAACCCAAGCTT 659
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 700 GGACCTTGTTATCAGCTCTACACCAAATCCTTCTACCAAAACATTCTCAAACCCAAGCTT 759
Query 660 AGCCCCAATGGCATTTTTGTGACCCAGGCTGGACCAGCAGGAATATTCACTCATAAGGAA 719
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 760 AGCCCTAATGGCATTTTTGTCACCCAGGCTGGACCAGCAGGAATATTCACTCATAAGGAA 819
Query 720 GTCTTCACATCAATCTACAACACCATGAAGCAAGTGTTCAAGTACGTAAAGGCTTACACA 779
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 820 GTCTTCACATCAATCTACAACACCATGAAGCAAGTCTTCAAGTACGTGAAGGCTTACACA 879
Query 780 GCACATGTGCCATCATTTGCGGACACATGGGGATGGGTGATGGCATCGGACCACGAGTTT 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 880 GCACATGTGCCATCATTTGCGGACACATGGGGATGGGTGATGGCATCGGACCACGAGTTT 939
Query 840 GATGTTGAAGTTGATGAAATGGATCGAAGAATCGAAGAGAGAGTTAAAGGAGAATTGATG 899
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 940 GACGTTGAAGTTGATGAAATGGATCGAAGAATCGAAGAGAGAGTTAACGGAGAATTGATG 999
Query 900 TATTTAAACGCTCCTTCTTTCGTCTCTGCTGCTACTCTCAACAAAACCATCTCTCTCGCA 959
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1000 TATCTAAACGCTCCTTCTTTCGTCTCTGCTGCTACTCTCAACAAAACCATCTCTCTCGCG 1059
Query 960 CTGGAGAAGGAGACTGAAGTTTATAGTGAAGAGAACGCGAGATTCATTCATGGTCATGGT 1019
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1060 CTAGAGAAGGAGACTGAAGTTTATAGTGAAGAGAATGCGAGATTCATTCATGGTCATGGT 1119
Query 1020 GTGGCGTACCGGCATATTTAAAAGAAGAACCGGTT-CAATTT 1060
|||||||||||||||||||||| || ||||||||| || |||
Sbjct 1120 GTGGCGTACCGGCATATTTAAA-GACGAACCGGTTTCAGTTT 1160
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51907363530
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5