BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941505
Length=1259
Score E
Sequences producing significant alignments: (Bits) Value
AT5G19550.1 | Symbols: ASP2, AAT2 | aspartate aminotransferase ... 2006 0.0
AT1G62800.2 | Symbols: ASP4 | aspartate aminotransferase 4 | ch... 1044 0.0
> AT5G19550.1 | Symbols: ASP2, AAT2 | aspartate aminotransferase
2 | chr5:6598017-6601819 FORWARD LENGTH=1624
Length=1624
Score = 2006 bits (1086), Expect = 0.0
Identities = 1192/1243 (96%), Gaps = 7/1243 (1%)
Strand=Plus/Plus
Query 10 TCCCTTG--TC-TAATGGATTCCGTCTTCTCTAACGTTGCTCGTGCTCCCGAAGATCCTA 66
||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 171 TCCCTTGTCTCGTCATGGATTCCGTCTTCTCTAACGTTGCTCGTGCTCCCGAAGATCCTA 230
Query 67 TTCTCGGTGTAACTGTTGCTTACAACAATGATCCTAGTCCCGTTAAGATCAATTTGGGTG 126
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 231 TTCTCGGTGTAACTGTTGCTTACAACAATGATCCTAGTCCTGTTAAGATCAATTTGGGTG 290
Query 127 TCGGTGCCTACCGAACTGAGGAAGGGAAGCCCCTCGTTCTTGATGTGGTGCGTAAGGCAG 186
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 291 TCGGTGCCTACCGAACTGAGGAAGGGAAGCCTCTTGTTCTTGATGTGGTGCGTAAGGCAG 350
Query 187 AGCAACTGCTCGTGAATGATCCGTCTCGGGTCAAGGAATACATTCCCATTGTTGGTATTG 246
|||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 351 AGCAACAGCTAGTGAACGATCCGTCTCGGGTCAAGGAATACATTCCCATTGTTGGTATTT 410
Query 247 CTGATTTTAACAAGCTAAGCGCCAAGCTCATCTTAGGTGCTGACAGTCCTGCAATCAAAG 306
| |||||||||||| ||||||||||||||||||||||||||||||||||||| || | ||
Sbjct 411 CCGATTTTAACAAGTTAAGCGCCAAGCTCATCTTAGGTGCTGACAGTCCTGCGATTACAG 470
Query 307 AGAA-TAGAGTTGCTACCA-TCCAGTGCTTGTCTGGTACTGGTTCCTTGAGAGTTGGGGC 364
| || ||||||| ||| || ||||||||||||||||||||||||| ||||||||||||||
Sbjct 471 A-AAGTAGAGTTACTA-CAGTCCAGTGCTTGTCTGGTACTGGTTCGTTGAGAGTTGGGGC 528
Query 365 TGAGTTTCTCAAAAAACACTACCACCAAGGTGTCATTTACATTCCAAAACCAACTTGGGG 424
|||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 529 TGAGTTTCTCAAAACACACTACCACCAAAGTGTCATTTACATTCCAAAACCAACTTGGGG 588
Query 425 GAACCATCCAAAAGTTTTCAACCTGGCAGGCTTGTCTGTGGAGTATTTCCGCTACTATGA 484
||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 589 GAACCATCCCAAAGTTTTCAACTTGGCAGGCTTGTCTGTGGAGTATTTCCGCTACTATGA 648
Query 485 TCCTGCAACCCGTGGTCTTGACTTCAAAGGCTTGCTCGAGGATCTTGGCGCTGCACCATC 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 649 TCCTGCAACCCGTGGTCTTGACTTCAAAGGCTTGCTCGAGGATCTTGGCGCTGCACCATC 708
Query 545 TGGAGCTATTGTCTTACTTCATGCATGTGCACACAATCCCACTGGAGTTGACCCAACTTC 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 709 TGGAGCTATTGTCTTACTTCATGCATGTGCACACAATCCCACTGGAGTTGACCCAACCTC 768
Query 605 TGAACAGTGGGAACAGATTCGACAGCTAATGAGATCTAAAAGCTTATTACCCTTTTTTGA 664
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 769 TGAACAGTGGGAACAGATTCGACAGCTGATGAGATCTAAAAGCTTATTACCCTTTTTTGA 828
Query 665 TAGTGCATATCAGGGTTTTGCTAGTGGTAGTCTTGACACAGATGCACAGTCTGTCCGTAC 724
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 829 TAGTGCATATCAGGGTTTTGCTAGTGGTAGCCTTGACACAGATGCACAATCTGTCCGTAC 888
Query 725 TTTTGTTGCTGATGGTGGTGAATGCTTGATAGCTCAAAGTTATGCCAAAAATATGGGACT 784
|||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 889 ATTTGTTGCTGATGGCGGTGAATGCTTGATAGCTCAAAGTTACGCCAAAAATATGGGACT 948
Query 785 CTATGGGGAACGTGTTGGTGCCCTTAGCATTGTCTGCAAGTCGGCAGATGTGGCTAGTAA 844
|||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 949 TTATGGGGAGCGTGTTGGTGCCCTTAGCATTGTCTGCAAGTCAGCAGATGTGGCTAGTAA 1008
Query 845 GGTTGAGAGCCAGGTGAAACTTGTTGTGCGACCCATGTACTCGAGCCCACCTATTCATGG 904
|||||||||||||||||| ||||||||||| |||||||| |||||||| |||||||||||
Sbjct 1009 GGTTGAGAGCCAGGTGAAGCTTGTTGTGCGGCCCATGTATTCGAGCCCCCCTATTCATGG 1068
Query 905 AGCATCAATTGTTGCCACCATTCTGAAAAGCAGTGATATGTACAACAACTGGACCATCGA 964
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1069 AGCATCAATTGTTGCCACCATTCTAAAAAGCAGTGATATGTACAACAACTGGACCATCGA 1128
Query 965 GTTGAAAGAAATGGCTGACCGCATAAAGAGCATGCGCCAACAGTTATTTGAAGCTATACA 1024
| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1129 GCTGAAAGAAATGGCTGACCGTATAAAGAGCATGCGCCAACAGTTATTTGAAGCTATACA 1188
Query 1025 AGCTAGAGGCACACCTGGTGACTGGAGTCACATTATCAAACAGATCGGGATGTTTACTTT 1084
||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||| ||
Sbjct 1189 AGCTAGAGGTACACCTGGTGACTGGAGTCATATTATCAAACAGATTGGGATGTTTACATT 1248
Query 1085 TACCGGATTGAACAAGGAGCAAGTTGAATTCATGACCCAAGAGTTTCACATTTACATGAC 1144
||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 1249 TACTGGATTGAACAAGGAGCAAGTTGAATTCATGACCAAAGAGTTCCACATTTACATGAC 1308
Query 1145 CTCTGACGGGAGAATAAGCATGGCAGGTCTAAGTTCGAAGACAGTGCCTCACCTTGCCGA 1204
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1309 CTCTGATGGGAGAATAAGCATGGCAGGTCTAAGTTCGAAGACAGTGCCTCACCTTGCCGA 1368
Query 1205 TGCTATGCATGCTGCAGTGACCCGCCTCGGCTAAACTAGCGAC 1247
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 1369 TGCTATGCATGCTGCAGTGACCCGCCTCGGCTAAACTAGCGAC 1411
> AT1G62800.2 | Symbols: ASP4 | aspartate aminotransferase 4 |
chr1:23253703-23257463 REVERSE LENGTH=1496
Length=1496
Score = 1044 bits (565), Expect = 0.0
Identities = 1028/1247 (82%), Gaps = 50/1247 (4%)
Strand=Plus/Plus
Query 17 TCTAATGGATTCCGTCTTCTCTAA-CGTTGC-TCGTGCTCCCGAAGATCCTATTCTCGGT 74
||| ||| ||||| |||| || || || | | || |||||||||||||||| ||||| ||
Sbjct 44 TCTCATGAATTCCATCTTGTC-AAGCG-TCCTTCCTGCTCCCGAAGATCCTGTTCTCAGT 101
Query 75 GTAACTGTTGCTTACAACA-ATGATCCTAGTCCCGTTAAGATCAATTTGGGTGTC-GGTG 132
|||| | |||||| | | ||||||||||||| |||||| | |||||| | | | |||
Sbjct 102 GTAATTTTTGCTT-GTAGAGATGATCCTAGTCCGGTTAAGTTGAATTTGAGCG-CAGGTA 159
Query 133 CCTACCGAACTGAGGAAGGGAAGCCCCTCGTTCTTGATGTGGTGCGTAAG-GCAGAGCAA 191
|||| |||||||||||||| ||||| || ||||||||||| ||| | ||| |||||||||
Sbjct 160 CCTATCGAACTGAGGAAGGAAAGCCTCTTGTTCTTGATGTTGTGAG-AAGAGCAGAGCAA 218
Query 192 CTGCTCGTGAATGATCC-GTCTCGGGTCAAGGAATA-CATTCCCATTGTTGGTA-TTGCT 248
| | | | || || || |||| ||| ||||||||| | ||||| | ||| | || ||
Sbjct 219 CAGTTAGCCAACGA-CCTGTCTAGGGACAAGGAATATC-TTCCCCTCAATGG-ACTTCCT 275
Query 249 GATTTTAACAAGCTAAGCGCCAAGCTCATCTTAGGTGCTGACAGTCCTGCAATCAAAGAG 308
|| ||||| || |||| |||||||||||||||||| ||| ||||||||| | ||||||
Sbjct 276 GAATTTAATAAATTAAGTACCAAGCTCATCTTAGGTGATGATAGTCCTGCATTGAAAGAG 335
Query 309 AATAGAGTTGCTACCATCCAGTGCTTGTCTGGTACTGGTTCCTTGAGAGTTGGGGCTGAG 368
|||||||||| ||| | ||| || ||||||||||||||||| ||||||||||| ||||||
Sbjct 336 AATAGAGTTGTTACAACCCAATGTTTGTCTGGTACTGGTTCTTTGAGAGTTGGAGCTGAG 395
Query 369 TTTCTCA-AAAAACACTACCACCAAGGTGTCATTTACATTCCAAAACCAACTTGGGGGAA 427
||||| | || |||| || | || ||||||||| | ||||||| ||||| ||||||||
Sbjct 396 TTTCT-AGCAACACACAACAAAGAAAGTGTCATTTTCGTTCCAAACCCAACGTGGGGGAA 454
Query 428 CCAT-CCAAAAGTTTTCAAC-CTGGCAGGCTTGTCTGTGGAGTATTTCCGCTACTATGAT 485
|||| || | |||| || |||| || |||||||| |||||||||| || ||||||
Sbjct 455 CCATCCCCGTA-TTTT-TACTTTGGCGGGTTTGTCTGTCCAGTATTTCCGTTATTATGAT 512
Query 486 CCTGCA-ACCCGTGGTCTTGACTTCAAAGGCTTGCTCGAGGATCTTGGCGCTGCACCAT- 543
|| | | | ||| || || |||||||||||| ||||||||||||||||||||||||| |
Sbjct 513 CC-GAAGAGCCGAGGACTCGACTTCAAAGGCATGCTCGAGGATCTTGGCGCTGCACC-TC 570
Query 544 CTGGAGCTATTGTCTTACTTCATGCATGTGCACACAATCCCACTGGAGTTGACCCAAC-T 602
|||||||||| || ||||||| || ||||| || || ||||| |||||||||||||| |
Sbjct 571 CTGGAGCTATAGTGGTACTTCAAGCTTGTGCGCATAACCCCACAGGAGTTGACCCAACAT 630
Query 603 TCTGAACAGTGGGAACAGATTCGACAG-CTAATGAGATCTAAAAGCTTATTACCCTTT-T 660
|| ||||| |||||| ||||||||| | ||| ||||||| |||||||||||| ||||| |
Sbjct 631 TC-GAACAATGGGAAAAGATTCGAC-GACTAGTGAGATCGAAAAGCTTATTA-CCTTTCT 687
Query 661 TTGATAGTGCATATCAGGGTTTTGCTAGTGGTAGTCTTGACACAGATGCACA-GTCTGTC 719
|||||||||||||||||||||||||||||||||| |||||| |||||||||| | | ||
Sbjct 688 TTGATAGTGCATATCAGGGTTTTGCTAGTGGTAGCCTTGACGCAGATGCACAAG-CGGTT 746
Query 720 CGTACT-TTTGTTGCTGATGGTGGTGAATGCTTGATAGCTCAAAGTTATGCCAAAAATAT 778
|||| | ||||| || ||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 747 CGTA-TGTTTGTAGCCGATGGAGGTGAATGTTTGATAGCTCAAAGTTATGCCAAAAATAT 805
Query 779 GGGACTCTATGGGGAACGTGTTGG-TGCCCTTA-GCATTGTCTGCA-AGTCGGCAGATGT 835
||| || |||||||| ||| |||| | | |||| | || || |||| | || | ||||||
Sbjct 806 GGGCCTTTATGGGGAGCGTATTGGCT-CTCTTACG-ATCGTATGCACA-TCAGAAGATGT 862
Query 836 GGCTA-GTAAGGTTGAGAGCCAGGTGAAACTTGTTGTGCGACCCATGTA-CTCGAGC-CC 892
|||| | ||| |||||| ||| ||| |||||||||| | || ||||| || | | ||
Sbjct 863 CGCTAAGAAAG-TTGAGAACCAAGTGCTACTTGTTGTGAGGCCTATGTATCTT-A-CACC 919
Query 893 ACCTATTCATGGAGCATCAATTGTTGCCACCATTCTGAAAAGCAGTGATATGTACAACAA 952
|||||||||||| ||||| ||||||||||| ||||| |||| ||||||||||||||| |
Sbjct 920 ACCTATTCATGGTGCATCTATTGTTGCCACAATTCTAAAAAACAGTGATATGTACAATGA 979
Query 953 CTGGACCATCGAGTTGAAAGAAATGGCTGACCGCATAAAGAGCATGCGCCAACAGTTATT 1012
||||||||| ||| |||||| ||||||||||||||||| |||||||| ||||||||||
Sbjct 980 CTGGACCATTGAGCTGAAAGGAATGGCTGACCGCATAATTAGCATGCGTCAACAGTTATA 1039
Query 1013 TGAAGCTATACAAGCTAGAGGCACACCTGGTGACTGGAGTCACATTATCAAACAGATCGG 1072
|| |||| || |||||||||| ||||||||||| |||||||||||||| ||||| || ||
Sbjct 1040 TGCAGCTCTAGAAGCTAGAGGAACACCTGGTGATTGGAGTCACATTATTAAACATATTGG 1099
Query 1073 GATGTTTACTTTTACCGGATTGAACAAGGAGCAAGTT-GAATTCATGACCCAAGAGTTTC 1131
||||||||||||||||||||||| ||||||||||| | || ||| || |||| | ||
Sbjct 1100 GATGTTTACTTTTACCGGATTGAGTGAGGAGCAAGTTCGC-TTGATGGCCAAAGAATATC 1158
Query 1132 ACATTTACATGACCTCTGACGGGAGAATAAGCATGGCAGGTCTAAGTTCGAAGACAGTGC 1191
||||||||||||| | ||| ||||| |||||||||||| |||||||||||||||||||||
Sbjct 1159 ACATTTACATGACTTATGATGGGAGGATAAGCATGGCAAGTCTAAGTTCGAAGACAGTGC 1218
Query 1192 CTCACCTTGCCGATGCTATGCATGCTGCAGTGACCCGCCTCGGCTAA 1238
|||| || || |||||||| ||||||| || || ||| ||| ||||
Sbjct 1219 CTCAACTCGCTGATGCTATACATGCTGTTGTTACTCGCATCGCCTAA 1265
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61897271985
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5