BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941515
Length=700
Score E
Sequences producing significant alignments: (Bits) Value
AT5G19650.1 | Symbols: ATOFP8, OFP8 | ovate family protein 8 | ... 1092 0.0
> AT5G19650.1 | Symbols: ATOFP8, OFP8 | ovate family protein 8
| chr5:6639632-6640297 REVERSE LENGTH=666
Length=666
Score = 1092 bits (591), Expect = 0.0
Identities = 643/667 (96%), Gaps = 8/667 (1%)
Strand=Plus/Plus
Query 21 ATGGAGaaaaaaaTGAAGCTCCGGGTTTCAAGAATAGTCCGGTCATCTTTAAGCTCTTGC 80
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAGAAGAGAATGAAGCTCCGGGTTTCAAGAATAGTCCGGTCATCTTTAAGCTCTTGC 60
Query 81 CGACCACGAGATCTATACGACGTCGTTGAGACTTGTGCTGTTACAAGTCAAGCAACGTCT 140
|||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 61 CGACCACGAGATCTATACGACGTCGTCGAGACTTGTGCTGTTACAAGTAAAGCAACGTCT 120
Query 141 TCCGAGAGGTTCTTCCTTACCGAAGCCAAAACCAAAACT-C--CACGACCAAAGAGGT-A 196
||||||||||||||| ||||| ||||||||||||||||| | |||||||||||| || |
Sbjct 121 TCCGAGAGGTTCTTCGTTACCAAAGCCAAAACCAAAACTCCATCACGACCAAAGA-GTCA 179
Query 197 TGCTTCTTCTTGCCCTCGTGCGTCACCGATATTCCCACCAAACCCTTTCTACGAAGAGAG 256
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 180 TGCTTCTTCTTGCCCTCGTGCGTCACCTATATTCCCACCAAACCCTTTCTACGAAGAGAG 239
Query 257 CCGTTCATTTCGAGATTTAAGGAAGAAGGTCAAGACAAACAGGAAGCAGAGATCGCAGTT 316
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 240 CCGTTCATTTCGAGATTTAAGGAAGAAGGTCAAGACAAACAGGAAGCAAAGATCGCAGTT 299
Query 317 TGGTTCTGACCCTCTCTTTGCCTCACGTTTTAAGTCAACCGGGTCTTGGTACTGGTCTTG 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TGGTTCTGACCCTCTCTTTGCCTCACGTTTTAAGTCAACCGGGTCTTGGTACTGGTCTTG 359
Query 377 TAGCGAGGAAGAAGACGAAGGAGACAAAGAAGAAAGTG-A-A-GATGATTCTGATACTCT 433
||| |||||||||||||||||||||||||||||||||| | | |||||||||||||||||
Sbjct 360 TAGTGAGGAAGAAGACGAAGGAGACAAAGAAGAAAGTGAAGATGATGATTCTGATACTCT 419
Query 434 CTTTTCTTCTAGAAGCTTCTCCTCGGACTCTTCGAAGGCAGAGAGTTTTGCGGTGGTGAA 493
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 420 CTTTTCTTCTAGAAGCTTCTCCTCGGACTCTTCAAAGGCGGAGAGTTTTGCGGTGGTGAA 479
Query 494 GAAGTCAAAGGATCCGTACGAAGATTTCAGGACGTCAATGGTGGAGATGATTGTTGAGAG 553
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GAAGTCAAAGGATCCATATGAAGATTTCAGGACGTCAATGGTGGAGATGATTGTTGAGAG 539
Query 554 ACAGATATTTGCAGCGGCTGAGCTACAACAGCTTCTTCAGTGTTTTTTGTCGTTAAACTC 613
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 540 ACAGATATTTGCACCGGCTGAGTTACAACAGCTTCTTCAGTGTTTTTTGTCGTTAAACTC 599
Query 614 TCGTCAACACCACAAAGTTATTGTCCAAGTGTTCTTAGAAATTTATGCTACCTTGTTCTC 673
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 600 TCGTCAACACCACAAAGTTATTGTCCAAGTGTTCTTAGAAATTTATGCCACCTTGTTCTC 659
Query 674 TCCCTAA 680
|||||||
Sbjct 660 TCCCTAA 666
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33908049225
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5