BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941520
Length=1565
Score E
Sequences producing significant alignments: (Bits) Value
AT5G19700.1 | Symbols: | MATE efflux family protein | chr5:666... 2412 0.0
> AT5G19700.1 | Symbols: | MATE efflux family protein | chr5:6660821-6662347
REVERSE LENGTH=1527
Length=1527
Score = 2412 bits (1306), Expect = 0.0
Identities = 1455/1528 (95%), Gaps = 5/1528 (0%)
Strand=Plus/Plus
Query 22 ATGGAAACCCCAAACGTCACCAGCCACACAAATCTTCTATCAAAGATAGACCTAGAAAAG 81
||||||||||||||| ||| ||||||||||||||||||||| ||||||||||| |||||
Sbjct 1 ATGGAAACCCCAAACATCATCAGCCACACAAATCTTCTATCGAAGATAGACCTGGAAAAA 60
Query 82 CAAAGCCCTGCCCCCATTTTCCCGACAATCACTGAGCTTAAAACAGAAGCCAAGTCTCTC 141
|||| |||||||||||||||||||||||||||||||||||||| || || | |||||||
Sbjct 61 CAAAACCCTGCCCCCATTTTCCCGACAATCACTGAGCTTAAAAGTGAGGCTAGGTCTCTC 120
Query 142 TTCTCCTTAGCCTTCCCGACAATACTTGCCGCCCTCATCCTCTACGCTCGCTCCGCCATC 201
||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||
Sbjct 121 TTCTCCTTAGCCTTCCCGACAATCCTCGCGGCCCTCATCCTCTACGCTCGCTCCGCCATC 180
Query 202 TCGATGCTCTTCCTCGGTCATCTCGGTGAACTAGAGCTCGCTGGTGGCTCCCTGGCCATT 261
||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||
Sbjct 181 TCGATGCTCTTCCTCGGGCATATCGGTGAACTAGAGCTAGCTGGTGGCTCCCTGGCCATT 240
Query 262 GCCTTTGCTAACATCACTGGCTACTCCGTTCTCGCAGGCCTTGCACTCGGTATGGACCCA 321
||||| |||||||||||||||||||||||||| ||||| ||||||||||| |||||||||
Sbjct 241 GCCTTCGCTAACATCACTGGCTACTCCGTTCTAGCAGGTCTTGCACTCGGCATGGACCCA 300
Query 322 CTCTGTTCGCAAGCCTTTGGAGCCGGAAAACCAAAACTCCTCTCTCTAACTCTCCAACGA 381
|||||||||||||||||||||||||| | |||||||||||||||| |||| || ||||||
Sbjct 301 CTCTGTTCGCAAGCCTTTGGAGCCGGCAGACCAAAACTCCTCTCTTTAACGCTTCAACGA 360
Query 382 ACCGTACTTTTCTTACTCACAAGTTCGGTAGTAATCGTCGCTCTATGGCTCAACCTGGGG 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 ACCGTACTTTTCTTACTCACAAGTTCGGTAGTAATCGTCGCTCTATGGCTCAACCTGGGG 420
Query 442 AAGATCATGATCTATCTTCATCAAGATCCAAGTATCTCATCGTTGGCCCAAACATATATT 501
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AAGATCATGATTTATCTTCATCAAGATCCAAGTATCTCATCGTTGGCCCAAACATATATC 480
Query 502 CTCTGCTCTATTCCTGATTTGCTCACCAATTCGTTTCTTCACCCTCTTCGTATATACCTT 561
|||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 481 CTCTGCTCTATTCCTGATCTGCTCACCAATTCCTTTCTTCACCCTCTTCGTATATACCTT 540
Query 562 AGAGCACAAGGTATCACAAGCCCTTTAACTCTCGCTACACTCGCTGGCACCATCTTCCAC 621
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 541 CGAGCACAAGGTATCACAAGCCCTTTAACTCTCGCAACACTCGCTGGCACCATCTTCCAC 600
Query 622 ATACCCATGAACTTTTTCCTCGTTTCTTACCTCGGATGGGGTTTCATGGGAGTTTCAATG 681
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 601 ATACCCATGAACTTTTTCCTCGTTTCTTACCTCGGATGGGGTTTCATGGGCGTTTCAATG 660
Query 682 GCCGCAGCCGCTTCAAATCTTTTTGTTGTCATTTTCCTTGTGGCCCATGTTTGGATCGCA 741
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 661 GCCGCAGCCGCTTCAAATCTTCTTGTTGTCATTTTCCTTGTGGCCCATGTTTGGATCGCA 720
Query 742 GGTCTACACCAGCCAACGTGGACCCGCCCCAGCTCCGAATGTTTCAAAGATTGGGGACCA 801
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 721 GGTCTACACCAGCCAACGTGGACCCGCCCCAGCTCGGAATGTTTCAAAGATTGGGGACCA 780
Query 802 CTGGTAAGTCTAGCCATACCTAGCTGCGTCGGGGTATGCCTAGAGTGGTGGTGGTACGAG 861
| |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 781 GTCGTAACCCTAGCCATACCTAGCTGCATCGGGGTATGCCTAGAGTGGTGGTGGTACGAG 840
Query 862 ATCATGACCGTTCTATGTGGTTTGCTCATAAACCCTAGTACTCCTGTGGCAGCAATGGGC 921
|| |||||||||||||||||||| |||||| ||||||||||||| |||||| ||||||||
Sbjct 841 ATAATGACCGTTCTATGTGGTTTACTCATAGACCCTAGTACTCCAGTGGCATCAATGGGC 900
Query 922 ATTCTTATCCAAACGACGTCTTTGCTTTACATTTTCCCATCGTCTCTAGGGTTTGCGGTC 981
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 901 ATTCTTATCCAAACGACGTCTTTGCTTTACATTTTCCCATCGTCTCTAGGGTTAGCAGTC 960
Query 982 TCCACCCGCGTTGGTAACGAACTTGGGTCAAACCGCCCAAACACGGCTAGGTTATCAGCC 1041
|||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 961 TCCACCCGAGTTGGTAACGAACTTGGCTCAAACCGCCCAAACAAGGCTAGGTTATCAGCC 1020
Query 1042 ATAGTGGCGGTTTCCTTTGCTGGGGTAATGGGTATGACGGCCTCTGCGTTTGCTTGGGGC 1101
||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 1021 ATAGTGGCGGTTTCCTTTGCTGGGGTAATGGGTCTGACGGCGTCTGCGTTTGCTTGGGGC 1080
Query 1102 GTAAGCGACGTCTGGGGACGGATCTTCACAAACGACATTGATATCATCCAATTAACCGCA 1161
|||||||| ||||||||| ||||||||||||||||| ||| ||||||| |||||||||||
Sbjct 1081 GTAAGCGATGTCTGGGGATGGATCTTCACAAACGACGTTGCTATCATCAAATTAACCGCA 1140
Query 1162 GCCGCGTTGCCGATTCTCGGGCTTTGCGAGCTCGGGAACTGCCCGCAAACAGTAGGTTGC 1221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 GCCGCGTTGCCGATTCTCGGGCTTTGCGAGCTCGGGAACTGCCCGCAAACAGTAGGTTGC 1200
Query 1222 GGGGTTGTAAGAGGCACCGCACGGCCGTCTAAGGCCGCGAACATAAACCTAGGAGCGTTT 1281
|||||||| |||||||| ||||||||||| | ||| ||||||||||||||||||||||||
Sbjct 1201 GGGGTTGTTAGAGGCACTGCACGGCCGTCCATGGCAGCGAACATAAACCTAGGAGCGTTT 1260
Query 1282 TACCTCGTTGGAACGCCTGTAGCCGTTGGGCTAACGTTTTGGGCCGCATATGGATTTTGC 1341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 TACCTCGTTGGAACGCCTGTAGCCGTTGGGCTAACGTTTTGGGCCGCATATGGATTTTGC 1320
Query 1342 GGACTTTGGTTAGGTCTTTTCGCGGCCCAGATATGTTGTGCTGCCATGATGCTATATGTC 1401
||||||||| |||||||||| || || |||||||||||||||||||||||||||||||||
Sbjct 1321 GGACTTTGGGTAGGTCTTTTAGCTGCTCAGATATGTTGTGCTGCCATGATGCTATATGTC 1380
Query 1402 GTGGCTACTACGGACTGGGAGAAAGAAGCAGAT-AGAGCCAGAAAGCTAACGTGCACTGA 1460
|||||||||||||||||||||||||||||| || |||||||||||||||||||| |||||
Sbjct 1381 GTGGCTACTACGGACTGGGAGAAAGAAGCA-ATTAGAGCCAGAAAGCTAACGTGTACTGA 1439
Query 1461 AGGCGTTGATGTGGTAATAACAACA-C--AAACAAACGGAGACTTATCGGAACCATTAAT 1517
||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||
Sbjct 1440 AGGCGTTGATGTGGTAATAACAACAACGCAAACCAACGGAGACTTATCGGAACCATTAAT 1499
Query 1518 TTACGTTGTCACTGTCGCTACTGACTGA 1545
||||||||||||||||||||||||||||
Sbjct 1500 TTACGTTGTCACTGTCGCTACTGACTGA 1527
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77258638755
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5