BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941526
Length=892
Score E
Sequences producing significant alignments: (Bits) Value
AT5G19750.1 | Symbols: | Peroxisomal membrane 22 kDa (Mpv17/PM... 1081 0.0
> AT5G19750.1 | Symbols: | Peroxisomal membrane 22 kDa (Mpv17/PMP22)
family protein | chr5:6677069-6679384 FORWARD LENGTH=1179
Length=1179
Score = 1081 bits (585), Expect = 0.0
Identities = 808/910 (89%), Gaps = 37/910 (4%)
Strand=Plus/Plus
Query 4 TCAGACCAGACGAAACAACGATGTTTAACCCCATCACTTTAACCCGGAAACCACCACTCC 63
||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||
Sbjct 36 TCAGACCAGACGAAACAACGATGCTTAACTCTATCACTTTAACCCGGAAACCACCACTCC 95
Query 64 CCTTCAATGT-TCTTGCGTTTTCCGGT-A-GA-----AG------GG-C--A-ATGTAT- 104
| ||||| | | ||| |||||| ||| | | | || | | | |||
Sbjct 96 CGTTCAA-CTCTGTTGGGTTTTCAGGTAATCACTCTTCGTCTTTTGGTCGAAGAACTATA 154
Query 105 A---AAGCTAGTTTGAGCAGGGCTCTTTCGTTTGGGTACAAATATGTTGGTTCACTGAAT 161
| ||| ||||| ||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 155 ACGGAAGGTAGTTCGAGCAAGGCTCTTTCGTTTGGGTACAAAAATGTTGGTTCACTGAAG 214
Query 162 TTTGGTCGTAGCAATTTGTCC-GGGAGATCCGGAACTGGGTTTGGGCATCTGGGT-CGGG 219
| |||||| ||||| ||| || ||| | || || |||| |||||||||||| || ||||
Sbjct 215 TGTGGTCGGAGCAA-TTGGCCGGGGCGTTCTGGGACTGCGTTTGGGCATCT-AGTCCGGG 272
Query 220 TCTCTTCggtctcaggt-ggaagttcaggtggttcaggcgggttaggtggttca---ggt 275
||||| ||||| ||||| |||| ||||||||| || |||||||||||||||||| |||
Sbjct 273 TCTCTGCGGTCCCAGGTGGGAA-TTCAGGTGGCTCTGGCGGGTTAGGTGGTTCAGGCGGT 331
Query 276 ggtggtggtggttccggcggtggaggtgatggtgaaggtAGCGGCGGAAACGGGAAGAAG 335
|||||||||||||||||| || |||| |||||| || |||| |||||| || ||||||
Sbjct 332 GGTGGTGGTGGTTCCGGC---GGCGGTGGTGGTGATGGAAGCGACGGAAAAGGAAAGAAG 388
Query 336 TGGTCA-TTCGTCTCATGGTACTTGGCTCTTCTCTCAGATTCTCCTGTTTTGACTAAAGC 394
|||||| ||| ||||||||||| ||||||||||||| | |||||||||||||| |||||
Sbjct 389 TGGTCACTTC-TCTCATGGTACCAGGCTCTTCTCTCAAACTCTCCTGTTTTGACCAAAGC 447
Query 395 TGTGACCTCAGCACTTTTGACCCTCATTGGAGATGTGATCTGTCAGCTTACAATCAATAA 454
||||||| |||||||||||| |||| |||||||| |||||||||||||||| ||||| ||
Sbjct 448 TGTGACCGCAGCACTTTTGAACCTCGTTGGAGATTTGATCTGTCAGCTTACTATCAACAA 507
Query 455 GACCTCATCACTGGACAAGAAGAGGACACTCACGTTTACCTTGTTGGGCTTAGGACTAGT 514
||||||||| ||||||||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct 508 GACCTCATCGCTGGACAAGAAGAGGACACTCACCTTTACCTTCTTGGGCTTAGGGCTAGT 567
Query 515 CGGACCAGCATTGCATTTCTGGTATCTGTATTTGAGCAAAGTGGTGACAGCTTCCGGATT 574
||| ||| ||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 568 CGGTCCAACATTGCATTTCTGGTATTTGTATTTGAGCAAAGTGGTGACAGCTTCTGGATT 627
Query 575 ATCAGGCGCAGTTATACGACTTTTACTGGATCAGTTTGTTTTTGCTCCTATTTTTGTTGG 634
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 628 ATCAGGCGCAGTTATACGACTTCTACTGGATCAGTTTGTTTTTGCTCCTATTTTTGTTGG 687
Query 635 AGTTTTCTTATCAGCAGTTGTGACACTTGAAGGAAAACCATCAAATGCCATACCGAAGCT 694
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 688 AGTTTTCTTATCAGCAGTTGTGACACTTGAAGGAAAACCATCAAATGTCATACCGAAGCT 747
Query 695 ACAACAGGAGTGGACTGGTGCAGTGCTAGCAAATTGGCAACTATGGATACCATTTCAGTT 754
|||||||||||||||||||||| || ||||||||||||| ||||||||||||||||||||
Sbjct 748 ACAACAGGAGTGGACTGGTGCAATGATAGCAAATTGGCAGCTATGGATACCATTTCAGTT 807
Query 755 TCTTAACTTCAGATTTGTTCCACAGAACTTCCAGGTACTTGCTTCAAACGTAGTGGCTTT 814
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 808 TCTTAACTTCAGATTTGTTCCACAGAACTACCAGGTACTTGCTTCAAACGTAGTGGCTTT 867
Query 815 GGCTTGGAATGTGATTTTATCATTCAAAGCTCACAAAGAGGTTGTCGCAAAGTAGGCATG 874
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||
Sbjct 868 GGCTTGGAATGTGATTTTATCATTCAAAGCTCACAAAGAAGTTGTTGCAAAGTAGACATG 927
Query 875 TTTCTTACCT 884
||||||||||
Sbjct 928 TTTCTTACCT 937
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43553005449
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5