BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941530
Length=798
Score E
Sequences producing significant alignments: (Bits) Value
AT5G19790.1 | Symbols: RAP2.11 | related to AP2 11 | chr5:66891... 1229 0.0
> AT5G19790.1 | Symbols: RAP2.11 | related to AP2 11 | chr5:6689108-6690040
REVERSE LENGTH=933
Length=933
Score = 1229 bits (665), Expect = 0.0
Identities = 753/793 (95%), Gaps = 15/793 (2%)
Strand=Plus/Plus
Query 14 aaaaaaaaaTGGAACATCAAACAACTCCAAAGCAGAAAACAAAGGAGAAGAGCAAAGGCA 73
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1 AAAAAAATATGGAACATCAAACAACTCCAAAGCAGAAAACTAAGGAGAAGAGCAAAGGCA 60
Query 74 ACAAGACTAAGTTTGTGGGAGTTAGGCAAAGGCCTTCAGGAAAATGGGTGGCAGAGATCA 133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ACAAGACTAAGTTTGTGGGAGTTAGGCAAAGGCCTTCAGGAAAATGGGTGGCAGAGATCA 120
Query 134 AAGACACTACACAAAAGATACGGATGTGGCTCGGAACTTTTGAGACCGCAGAGGAAGCCG 193
||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||
Sbjct 121 AAGACACTACACAAAAGATACGGATGTGGCTCGGAACCTTTGAAACCGCAGAAGAAGCCG 180
Query 194 CTCGAGCCTACGATGAAGCTGCCTGTCTTTTACGTGGCTCCAATACTCGCACCAATTTCG 253
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 181 CTCGAGCCTACGATGAAGCTGCATGTCTCTTACGTGGCTCCAATACTCGCACCAATTTCG 240
Query 254 CAAACCATTTTCCTAACAACTCACAACTTTCTTTGAAGATCAGAAACCTCCTTCACCAGA 313
|||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||
Sbjct 241 CAAACCATTTTCCTAACAACTCACAACTATCTTTGAAGATCAGAAATCTTCTTCACCAGA 300
Query 314 AGCAGAGCATGAAGca--a-caacaacaacaacacaaacCCGTTTCTTCTTTTGCGGACT 370
|||||||||||||||| | |||||||||||||||||||| ||||||||||| |||| |
Sbjct 301 AGCAGAGCATGAAGCAGCAGCAACAACAACAACACAAACCAGTTTCTTCTTTAACGGATT 360
Query 371 GCAGCATCAACTACA-CTTCGACTGCTACTAGTCTCACCACAACTACCACCAC------T 423
||| ||||||||||| || ||||||||||||||||||||||||| |||||||| |
Sbjct 361 GCAACATCAACTACATCT-CGACTGCTACTAGTCTCACCACAACCACCACCACCACCACT 419
Query 424 ACCACGGCTATGCCGCTCAATAATGTGTACAGACCAGATTCATCGGTCATTGGGCAACCA 483
|||||||| || |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 420 ACCACGGCCATACCGCTCAATAATGTGTACCGACCAGATTCATCGGTCATTGGGCAACCA 479
Query 484 GAAACCGACAGTCTCCAGCTTCCTTATTCATGGCCCCTTGTCTCTGGATTCAACCATCAG 543
|||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 480 GAAACCGAGGGTCTCCAGCTTCCTTATTCGTGGCCCCTTGTCTCTGGATTCAACCATCAG 539
Query 544 ATTCCATTGGCTCAGGGAGGGGGAGAAGAAACACATGGACATCTCAACGATCACTACTCA 603
|||||||||||||||| |||||||||| | |||||||||||||||||||||||||||||
Sbjct 540 ATTCCATTGGCTCAGGCAGGGGGAGAA-A--CACATGGACATCTCAACGATCACTACTCA 596
Query 604 ACCGATCAACATTTGGGTCTTGCAGAAATCGAAAGACAGATATCTGCGTCCCTATATGCA 663
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 597 ACCGATCAACATTTGGGTCTTGCAGAAATTGAAAGACAGATATCTGCGTCCCTATATGCA 656
Query 664 ATGAATGGAGCTAACAGTTACTATGACAACATGAATGCAGAATATGCAATTTTCGATCCT 723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 ATGAATGGAGCTAACAGTTACTATGACAACATGAATGCAGAATATGCAATTTTCGATCCT 716
Query 724 ACCGATCCCATTTGGGATCTCCCTTCACTCTCCCAACTTTTCTGCCCTACGTGATT-CCA 782
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 717 ACCGATCCCATTTGGGATCTCCCTTCACTCTCCCAACTCTTCTGCCCTACGTGATTTCCA 776
Query 783 ATTTACTTTTCCT 795
|||||||||||||
Sbjct 777 ATTTACTTTTCCT 789
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38830995631
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5