BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941535
Length=656
Score E
Sequences producing significant alignments: (Bits) Value
AT5G19855.1 | Symbols: | Chaperonin-like RbcX protein | chr5:6... 1022 0.0
> AT5G19855.1 | Symbols: | Chaperonin-like RbcX protein | chr5:6711972-6713636
REVERSE LENGTH=997
Length=997
Score = 1022 bits (553), Expect = 0.0
Identities = 626/661 (95%), Gaps = 5/661 (1%)
Strand=Plus/Plus
Query 1 TTGCTGTTTGGTTTGGAGTAATGGTGGGTGCTTGGTTTGTTGTTGGCTCACCGGTGATGG 60
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 172 TTGCTGTTTGGTTTGGAGTAATGGTGAGTGCTTGGTTTGTTGTTGGCTCACCGGTGATGG 231
Query 61 ACTCTTCGAGCAGTCCATGTTTGTGCCTGGATGCTCACACGACGGGTAACATCAGGAGGA 120
|||||||||||||||||||||| || |||||||||||||||||||||| |||||||||||
Sbjct 232 ACTCTTCGAGCAGTCCATGTTTATGTCTGGATGCTCACACGACGGGTACCATCAGGAGGA 291
Query 121 AGAAGATCCTTGGCAGTGCAAGAAATCTGGAATTAGGAAGCTCTTTTACTGGCTCACGCA 180
||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 292 AGAAGATCCTTGGCAAAGCAAGAAATCTGGAATTAGGAAGCTCTTTCACTGGCTCACGCA 351
Query 181 TTGTTTTTAGGCTTTCTCCGAAGCGTGTATCGAGAATTGCGAATCGAAAGAGCAAAAAGC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 352 TTGTTTTTAGGCTTTCTCCGAAGCGTGTATCGAGAATTGCGAATCGAAAGAGCAAAAAGC 411
Query 241 TCTTGATTGTGAATGAGGATGTTGCTGGGAATTACGAAGATACCTTCGGTGATGTCCAAA 300
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||
Sbjct 412 TCTTGATTGTGAATGAGGATGTTGCTGGTAATTACGACGATACCTTCGGTGATGTACAAA 471
Query 301 AGCAAATTGTTAATTATTTCACATACAAAGCTGTGAGGACGGTTCTTCATCAGCTCTACG 360
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 472 AGCAAATTGTTAATTATTTTACATACAAAGCTGTGAGGACGGTTCTTCATCAGCTGTACG 531
Query 361 AAATGAATCCTCCTCAATACACTTGGTTCTATAATCATATCATAACAAACAAACCAACGG 420
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 532 AAATGAATCCTCCTCAATACACTTGGTTCTATAATCATATCATAACAAACAGACCGACGG 591
Query 421 ATGGCAAACGTTTTCTTCGCGCCCTCGGCAAGGAGAGTCAGGAGCTTGCAGAAAGAGTGA 480
||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||
Sbjct 592 ATGGCAAACGTTTCCTCCGTGCCCTCGGCAAGGAGAGTCAGGAGCTTGCAGAAAGAGTGA 651
Query 481 TGATCACGCGTCTTCACTTGTATGGCAAGTGGATCAAGAAATGCGACCATGGGAAGATAT 540
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 652 TGATCACGCGTCTTCACTTGTATGGCAAATGGATCAAGAAATGCGACCATGGGAAGATAT 711
Query 541 ACCAAGATATATCGGATGAGAACTTGGCGTTGATGCGTGAACGCCTGATGGAAACAGTGA 600
|||| || ||||||||||| |||||||||||||||||||||||||||||||| || ||||
Sbjct 712 ACCAGGAAATATCGGATGAAAACTTGGCGTTGATGCGTGAACGCCTGATGGAGACCGTGA 771
Query 601 TATGGCCTTCTGATGACTCAGA-----GGTAATTGGCTGAAGAAGGCTGCACACACCACA 655
|||||||||| |||||| || | |||||| ||||||||||| | || |||||||||
Sbjct 772 TATGGCCTTCCGATGACACAAACTCAAGGTAATAGGCTGAAGAAGACAGCGCACACCACA 831
Query 656 G 656
|
Sbjct 832 G 832
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31697746757
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5