BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941537
Length=858
Score E
Sequences producing significant alignments: (Bits) Value
AT5G19870.1 | Symbols: | Family of unknown function (DUF716) ... 1336 0.0
> AT5G19870.1 | Symbols: | Family of unknown function (DUF716)
| chr5:6716073-6717110 REVERSE LENGTH=1038
Length=1038
Score = 1336 bits (723), Expect = 0.0
Identities = 799/836 (96%), Gaps = 4/836 (0%)
Strand=Plus/Plus
Query 1 TCTCAACCTCCAAAGCTTCAACATGGGAACATTGGTGGGTCACATTTTACCGGGCttttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 77 TCTCAACCTCCAAAGCTTCAACATGGGAACATTGGTGGGTCACATTTTACCGGGCTTTTT 136
Query 61 tttCTTTGCACTTGGTCTTTGGCACCTCTTTAACCACATCAAATTATTTTCTCTACACTC 120
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 137 CTTCTTTGCACTTGGTCTTTGGCACCTCTTTAACCACATCAAAATATTTTCTCTACACCC 196
Query 121 AAAATCATACATAGCACCTTTATGGTTCCCCTTATCCAAACCAAGATATTTAGAGCCTAT 180
|||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 197 AAAATCGTACATAGCACCTTTATGGTTCCCCTTATCGAAACCAAGATATTTAGAGCCTCT 256
Query 181 CT-TGATCATTATAGGCTCCTCACTTTCCATTTCTGTGGAACTCTTCCTTGGCCAAAAGA 239
| |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 257 -TGTGATCATTATAGCCTCCTCACTTTCCATTTCTGTCGAACTCTTCCTTGGCCAAAAGA 315
Query 240 ATCACCAACCATTTGATCCCAATGATGGAACCATACCATCAAACCATCTCCATAACTTTG 299
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 316 ATCACCAACCATTTGATCCCAATGATGGAACCATCCCATCAAACCATCTCCATAACTTTG 375
Query 300 AACACTCTTGCATCTCCTTCACCATCATCACCTATGCAGCTTTCGCTATCGTCTTTGATA 359
||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 376 AACACTCTTGCATCTCCTTCACCTTCATCACCTATGCAGCTTTCGCCATCGTCTTTGATA 435
Query 360 AAACAAGTCCAATGGCTCATCGGGCCCTCATCAACTTGATTGCGGCCCTCGCCTTCACCC 419
||||||| ||||| |||||||| |||||||||||||||| ||||||||||||||| |||
Sbjct 436 AAACAAGACCAATAGCTCATCGATCCCTCATCAACTTGATCGCGGCCCTCGCCTTCGCCC 495
Query 420 AACAACTCTTCCTCTTCCATTTCCATTCGTCAGACCACACGGGCGTTGAGGGCCACTACC 479
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 496 AACAACTCTTCCTCTTCCATTTCCACTCGTCAGACCACACAGGCGTTGAGGGCCACTACC 555
Query 480 ATTTGTTGCTCCAAATCGTAGTTTTTGTCTCTTTGGTCACAACACTCTTGGGAATCGCCT 539
|||| ||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 556 ATTTATTGCTCCAACTCGTAGTTTTCGTCTCCTTGGTCACAACACTCTTGGGAATCGCCT 615
Query 540 TACCAAGTAGCTTCATGTTGAGTTTTGTTCGATCACTTAGTGTTTCCTTCCAAGGAATAT 599
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 616 TACCAAGTAGCTTCATATTGAGTTTTGTTCGGTCACTTAGTGTTTCCTTCCAAGGAATAT 675
Query 600 GGCTTATGTCAATGGCTTGCATGCTTTGGACGCCAAGTTTGGTCCCCAAGGATTGTTTTC 659
|||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
Sbjct 676 GGCTTATGTCAATGGCTTGCATGCTTTGGACGCCAAGTTTAGTTCCCAAGGATTGTTTCC 735
Query 660 TTCACATTGAAGAGGGTAAACATACCATTAGATGCTCA-AGCGTCAAAGCTCTTCATAGA 718
|||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||
Sbjct 736 TTCACATTGAAGAGGGTAAACACACCATTAGATGCTCAGA-CGTCAAAGCTCTTCATAGA 794
Query 719 GCAATATCATTGGTAAATATCCAATTCAGCTGGTTTCTTGTGATCATAACCATCTTTGCA 778
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 795 GCAATATCATTGGTTAATATCCAATTCAGCTGGTTTCTTGTGATCATAACCATCTTTGCA 854
Query 779 ATGTGGTTTTATATATTTTTGCAAAGGATCTACGGTGAGAAAATAGAATATTCTCA 834
||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 855 ATGTGGTTTTACATATTTTTGCAAAGGATCTACGGTGAGAAAATTGAATACTCTCA 910
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41845044451
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5