BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg941538

Length=412
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G19875.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   667    0.0  


> AT5G19875.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: response to oxidative stress; 
LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant 
structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis 
thaliana protein match is: unknown protein (TAIR:AT2G31940.1); 
Has 30201 Blast hits to 17322 proteins in 780 species: 
Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 
3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: 
NCBI BLink). | chr5:6718341-6718995 FORWARD LENGTH=655
Length=655

 Score =  667 bits (361),  Expect = 0.0
 Identities = 396/413 (96%), Gaps = 2/413 (0%)
 Strand=Plus/Plus

Query  1    GAGAAGATCAAGAAGAAGGCATGGCGAGATCACCATACTATGGCTCATCTTACTTAGACT  60
            ||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct  52   GAGAAGACCAAGAAGAAGGCATGGCTAGATCACCATACTATGGTTCATCTTACTTAGACT  111

Query  61   ACCT-TGCTCTCCCAAACCCACATCTCTGTTTCTTCTTCATCGTCGTCTTTTTCGTGTTG  119
            |||| | |||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct  112  ACCTCT-CTCTCCCAAACCCACATCTCTGTTTCCTCTTCATCGTCGTCTTCTTCGTGTTG  170

Query  120  TCCCTCACATGGTACTTGAACTACGAGTCCATCATCGAAGACACCCTGGACCAGCTTAAA  179
            ||| |||||||||||||||||| |||||||||||||||||||||||||||||| || || 
Sbjct  171  TCCTTCACATGGTACTTGAACTTCGAGTCCATCATCGAAGACACCCTGGACCACCTCAAG  230

Query  180  CTCGTCTTTATGTTCACCcctctcttcctcctcctcctcgtccacttcttctccggtggc  239
            ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  231  CTCGTCTTTATATTCACCCCTCTCTTCCTCCTCCTCCTCGTCCACTTTTTCTCCGGTGGC  290

Query  240  ctctccttctACGTCCCCTGGCCTGAACAAGACTCCATTCACCGTGCTGGTTCTTCCCCT  299
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  291  CTCTCCTTCTACGTCCCCTGGCCTGAACAAGACTCCATTCACCGTGCTGGTTCTTCCCCT  350

Query  300  TGGGGCGTAGCAGCCGTGCTCGTGCTCATATTGTTCATGGTCTCGTACCAGTCAGATTTC  359
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  351  TGGGGCGTAGCAGCCGTGCTCGTGCTCATATTGTTCATGGTTTCGTACCAGTCAGATTTC  410

Query  360  CAGGAGAGGTGGTTCCCGTTTGGGGCTAAGTAGATCGATCAGAGTTTATGATG  412
            |||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct  411  CAGGAGAGGTGGTTCCCGTTTGGGGCTAAGTAGATCAATCAAAGTTTATGATG  463



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19503886612


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5