BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941540
Length=1037
Score E
Sequences producing significant alignments: (Bits) Value
AT5G19890.1 | Symbols: | Peroxidase superfamily protein | chr5... 1576 0.0
AT4G08770.1 | Symbols: Prx37 | Peroxidase superfamily protein |... 80.5 3e-14
AT4G08780.1 | Symbols: | Peroxidase superfamily protein | chr4... 80.5 3e-14
> AT5G19890.1 | Symbols: | Peroxidase superfamily protein | chr5:6724115-6725923
REVERSE LENGTH=1290
Length=1290
Score = 1576 bits (853), Expect = 0.0
Identities = 980/1041 (94%), Gaps = 10/1041 (1%)
Strand=Plus/Plus
Query 1 AGTAAGTCTTTTAAACAAGCCATCTAGACT-ATGAAAACACCAACCAAAGTGATGGGAGG 59
|||||||||||||||||||| ||||||| | |||||||||| ||||||||||||||||||
Sbjct 17 AGTAAGTCTTTTAAACAAGCTATCTAGA-TAATGAAAACACAAACCAAAGTGATGGGAGG 75
Query 60 ACATGTCTTGCTTACTGTATTCACT-TTGTGTATGCTTTGTTCAGGGGTTAGGGCACAGC 118
|||||||||||||||||| |||||| || |||||||||||||||||||||||||||||||
Sbjct 76 ACATGTCTTGCTTACTGTTTTCACTCTT-TGTATGCTTTGTTCAGGGGTTAGGGCACAGC 134
Query 119 TAAGCTTTGACATTTATGCTAAATCGTGCCCCAATCTTGTGCAAATTGTCCGTAGACAAG 178
||||| |||||||||||||||||||||||||||||| || ||||||||||||| |||||
Sbjct 135 TAAGCCCTGACATTTATGCTAAATCGTGCCCCAATCTAGTTCAAATTGTCCGTAAACAAG 194
Query 179 TTATAATTGCCCTGAAGGCCGAGATACGGATGGCTGCTTCCCTCATTCGTCTTCATTTCC 238
|| || |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 195 TTGCCATCGCCCTGAAGGCCGAGATACGGATGGCTGCTTCTCTCATTCGTCTTCATTTCC 254
Query 239 ACGACTGCTTTGTTAATGGGTGTGATGCGTCTG-TATTGTTGGATGGAGCTGACAGCGAG 297
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 255 ACGACTGCTTTGTTAATGGGTGTGATGCGTC-GTTATTGTTGGATGGAGCTGACAGCGAG 313
Query 298 AAACTCGCGATCCCAAACATTAATTCTGCGAGAGGGTTTGAAGTAATTGATACAATCAAA 357
||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||
Sbjct 314 AAACTCGCGATCCCAAACATTAACTCTGCTAGAGGATTTGAAGTAATTGATACAATCAAA 373
Query 358 GACGCTGTGGAAAACGCATGTCCTGGGGTTGTTTCTTGTGCTGATATCCTCACTTTGGCC 417
| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 374 GCCGCTGTGGAAAACGCATGTCCTGGTGTTGTTTCTTGTGCTGATATCCTCACTTTGGCC 433
Query 418 GCTCGTGACTCGGTTTTCTTGAGCGGAGGGCCTCAGTGGAGAGTGGCATTAGGAAGAAAA 477
||||||||||| ||| | ||||| ||||||||| |||||||||||||||||||||||||
Sbjct 434 GCTCGTGACTCCGTTGTATTGAGTGGAGGGCCTGGGTGGAGAGTGGCATTAGGAAGAAAA 493
Query 478 GATGGATTGGTGGCAAATCAGAACAGTGCAAACAATCTCCCATCTCCTTTTGAACCTTTA 537
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 494 GATGGATTGGTGGCAAATCAGAACAGTGCAAACAATCTACCATCTCCTTTTGAACCTTTA 553
Query 538 GACGCTATTATCGCCAAATTTGTAGCCGTAAACCTTAACATCACCGACGTCGTAGCTTTA 597
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 554 GACGCCATTATCGCCAAATTTGTAGCCGTAAACCTTAACATCACCGACGTCGTAGCTTTA 613
Query 598 TCAGGAGCTCACACCTTTGGACAAGCGAAGTGTGCTGTCTTCAGCAACCGTCTGTTCAAC 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 614 TCAGGAGCTCACACCTTTGGACAAGCGAAGTGTGCTGTCTTCAGCAACCGTCTGTTCAAC 673
Query 658 TTTACCGG-TGCGGGAACTCCTGACGCAACACTTGAGACATCACTGTTGTCTAATCTGCA 716
|||||||| | ||||| ||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 674 TTTACCGGCTT-GGGAAATCCCGACGCAACACTTGAGACATCACTCTTGTCTAATCTGCA 732
Query 717 AACAGTTTGTCCCCTTGGAGGAAATAGTAACACAACAGCGCCCCTTGACAGGAACTCTAC 776
|||||||||||| || |||||||||||||||| |||||| || |||||||||| | ||||
Sbjct 733 AACAGTTTGTCCGCTCGGAGGAAATAGTAACATAACAGCACCTCTTGACAGGAGCACTAC 792
Query 777 GGACGCCTTTGACAACAATTATTTCAAGAACCTACTCGAAGGGAAAGGTCTTTTGAGCTC 836
|||| |||| ||||||||||||||||||||||| || ||||| |||||||||||||| ||
Sbjct 793 GGACACCTTCGACAACAATTATTTCAAGAACCTGCTTGAAGGAAAAGGTCTTTTGAGTTC 852
Query 837 TGATCAGATTCTGTTCTCGAGTGATTTAGCTGTGAACACAACAAAGAGACTAGTGGAGGC 896
|||||||||||||||||||||||| ||||| |||||||| ||||||| ||||||||||||
Sbjct 853 TGATCAGATTCTGTTCTCGAGTGACTTAGCCGTGAACACCACAAAGAAACTAGTGGAGGC 912
Query 897 TTATAGTCGGAGCCAGAACTTGTTTTTCAGGGACTTCACATGTTCGATGATCAGAATGGG 956
||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 913 TTATAGTCGGAGCCAGAGCTTGTTTTTCAGGGACTTCACATGTGCGATGATCAGAATGGG 972
Query 957 AAACATTGCAAATGGAGCTAGTGGGGAGGTTAGGA-AGAACTGCAGGGTTATCAATAATT 1015
||||||| | ||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 973 AAACATTTCGAATGGAGCTAGTGGGGAGGTTAGGACA-AACTGCAGGGTTATCAATAATT 1031
Query 1016 AGCATGTGTGTGTGTTTTCGA 1036
|||||||||||||||||||||
Sbjct 1032 AGCATGTGTGTGTGTTTTCGA 1052
> AT4G08770.1 | Symbols: Prx37 | Peroxidase superfamily protein
| chr4:5598115-5600312 REVERSE LENGTH=1235
Length=1235
Score = 80.5 bits (43), Expect = 3e-14
Identities = 52/56 (93%), Gaps = 2/56 (4%)
Strand=Plus/Plus
Query 224 TTCGTCTTCATTTCCACGACTGCTTTGTTAATGGGTGTGATGCGTCTG-TATTGTT 278
|||||||||||||||||||||||||||||||||| |||||||| || | |||||||
Sbjct 226 TTCGTCTTCATTTCCACGACTGCTTTGTTAATGGATGTGATGCATC-GATATTGTT 280
> AT4G08780.1 | Symbols: | Peroxidase superfamily protein | chr4:5604153-5608202
FORWARD LENGTH=1041
Length=1041
Score = 80.5 bits (43), Expect = 3e-14
Identities = 52/56 (93%), Gaps = 2/56 (4%)
Strand=Plus/Plus
Query 224 TTCGTCTTCATTTCCACGACTGCTTTGTTAATGGGTGTGATGCGTCTG-TATTGTT 278
|||||||||||||||||||||||||||||||||| |||||||| || | |||||||
Sbjct 176 TTCGTCTTCATTTCCACGACTGCTTTGTTAATGGATGTGATGCATC-GATATTGTT 230
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50836956764
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5