BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941545
Length=763
Score E
Sequences producing significant alignments: (Bits) Value
AT5G19940.1 | Symbols: | Plastid-lipid associated protein PAP ... 1164 0.0
> AT5G19940.1 | Symbols: | Plastid-lipid associated protein PAP
/ fibrillin family protein | chr5:6739624-6740957 FORWARD
LENGTH=1085
Length=1085
Score = 1164 bits (630), Expect = 0.0
Identities = 721/765 (94%), Gaps = 6/765 (1%)
Strand=Plus/Plus
Query 1 CTT-CTCTCTCTAGAGCAACAATGGCTTCGGCTGCTTCTTCCCTTACAATCGCGTCTTCC 59
||| ||||||| ||||||||||||||| || |||||||||| |||||||||||||| ||
Sbjct 49 CTTACTCTCTCCAGAGCAACAATGGCTGCGACTGCTTCTTCTCTTACAATCGCGTCGTCA 108
Query 60 CTCTCCGAACCACGGACTCAGATCCATTCCTCGAAG-CGTTCGAATCTCCCTCTTCAATA 118
|||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||
Sbjct 109 TTCTCCGAACCACGGACTCAGATCCATTCCTCG-AGACGTTTGAATCTCCCTCTTCAATA 167
Query 119 TTCAATCCCGTACAAGGCCGTAACACGGAGCAGGACTAGAAGATTAGGACTCGTCGTGAG 178
||||||||||||||||| || |||||| |||| ||||||||||||||||||||| ||
Sbjct 168 TTCAATCCCGTACAAGG-TGT--TACGGAGTAGGAGTAGAAGATTAGGACTCGTCGTCAG 224
Query 179 TTCCGTTTCAGCTCCCAACGTTGAGCTCCGTACTGGACCTGATGATCTCATTTCTACCCT 238
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 225 TTCTGTTTCAGCTCCCAACGTTGAGCTCCGTACTGGACCTGATGATCTCATTTCTACCCT 284
Query 239 CCTCTCTAAGGTTGCAAATAGTGATGGAGGTGTGACGCTAAGCCCTGAGCAGCACAAGGA 298
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 285 CCTCTCTAAGGTTGCGAATAGTGATGGAGGTGTGACGCTAAGCCCTGAGCAGCACAAGGA 344
Query 299 AGTGGCACAAGTGGCTGGAGAGCTTCAAAAGTACTGTGTCAAGGAGCCTGTTAAAAACCC 358
|||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 345 GGTGGCACAAGTGGCCGGAGAGCTTCAAAAGTACTGTGTCAAGGAGCCTGTCAAAAATCC 404
Query 359 TCTCATTTTCGGAGATTGGGAAGTGGTGTACTGTTCTAGACCGACCTCTCCTGGTGGAGG 418
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 405 TCTCATTTTTGGAGATTGGGAAGTGGTGTACTGTTCTAGACCAACCTCTCCTGGTGGAGG 464
Query 419 CTACAGAAGTGTGATAGGCCGTCTCTTCTTCAAAACGAAAGAGATGGTACAAGCCATCGA 478
||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 465 CTACAGAAGCGTGATAGGCCGTCTCTTCTTCAAAACGAAAGAGATGATACAAGCCATCGA 524
Query 479 TGCTCCTGATATCGTTAGGAACAGAGTTTCCATCAATGCTTTTGGTTTTCTTGACGGAGA 538
||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||
Sbjct 525 TGCTCCTGATATCGTTAGGAACAAAGTTTCCATTAATGCTTTTGGTTTTCTAGACGGAGA 584
Query 539 TGTCTCCTTGACAGGGAAGTTGAAAGCCTTGGACAGTGAGTGGGTGCAGGTGATATTTGA 598
|||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 585 CGTCTCCTTGACAGGGAAGCTGAAAGCGTTGGACAGTGAGTGGGTGCAGGTGATATTTGA 644
Query 599 GCCTCCGGAAATCAAGGTTGGATCTTTGGAATTCAAATACGGGTTTGAAAGCGAAGTGAA 658
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 645 GCCTCCGGAAATCAAGGTTGGATCTTTGGAGTTCAAATACGGGTTCGAAAGCGAAGTGAA 704
Query 659 GCTTCGGATCACATATGTTGATGAGAAACTTAGACTGGGATTAGGCTCTAAAGGATCATT 718
||||||||||||||| ||||||||||||||||| ||||||| || ||||||||||||||
Sbjct 705 GCTTCGGATCACATACGTTGATGAGAAACTTAGGTTGGGATTGGGATCTAAAGGATCATT 764
Query 719 GTTCGTCTTTAGGAGGCGTCAATAATATATATGTTTCTCCCTCGT 763
|||||||||||| |||||||||||||||||| |||||||||||||
Sbjct 765 GTTCGTCTTTAGAAGGCGTCAATAATATATACGTTTCTCCCTCGT 809
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37072800486
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5