BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941548
Length=1141
Score E
Sequences producing significant alignments: (Bits) Value
AT5G19970.1 | Symbols: | unknown protein; Has 1807 Blast hits ... 1742 0.0
> AT5G19970.1 | Symbols: | unknown protein; Has 1807 Blast hits
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other
Eukaryotes - 339 (source: NCBI BLink). | chr5:6747550-6748641
FORWARD LENGTH=1092
Length=1092
Score = 1742 bits (943), Expect = 0.0
Identities = 1047/1097 (95%), Gaps = 7/1097 (1%)
Strand=Plus/Plus
Query 22 ATGAAACTACTCAATAAGTACGTTTTAACAACTATCTCTGACCGGAGTTTCATCCGACAG 81
|||||||||||||||||||| ||||| || || ||||||||||||||||||||||||||
Sbjct 1 ATGAAACTACTCAATAAGTATGTTTTGACCACAATCTCTGACCGGAGTTTCATCCGACAA 60
Query 82 CTCAACGATGGATCACAGAGAGACACGTGGATTTTCGTCTACACCAGGCGTTGGCGCCGT 141
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 61 CTCAACGATGGATCACAGAGAGACACGTGGATTTTCGTCTACACGAGGCGTTGGCGCCGT 120
Query 142 GACAACGGTGTGCTTCACGGATTCTCGGACCGATCCGTACGGTGGTTCAAGATTCCGGTG 201
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 121 GACAACGGTGTGCTTCACGGTTTCTCGGACCGATCCGTACGTTGGTTCAAGATTCCGGTG 180
Query 202 GCTGAAATTCTCGCCGGGGAGATTCGTCCCGGCGAAGATTTATATTTACTAACAGCTAGC 261
|||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 181 GCTGAAATACTCGCCGGGGAGATTCGTCCCGGCGAAGATTTGTATTTACTAACTGCTAGT 240
Query 262 GGTAACTTCCTTCTATTTGCCTCTAATACTCATAGTGGAATCATAGCCGTTGATTTGGTG 321
||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 241 GGTAATTTCCTTCTCTTTGCTTCTAATACTCATAGTGGAATCATAGCCGTTGATTTGGTG 300
Query 322 GGCAAGATCGTTACAAGAATCAGCTCATGTCCGTTAGGTCCACGTGGAACTTCGTCTTGG 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GGCAAGATCGTTACAAGAATCAGCTCATGTCCGTTAGGTCCACGTGGAACTTCGTCTTGG 360
Query 382 AGACGATCCGGTATGAAGCTAGTGCCTGATCCATCAAGTCCTAGTCATTTCCGGTTTATG 441
|||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 361 AGACGATCCGGTATGAAGCTTGTGCCTGATCCATCAAATCCTAGTCATTTCCGGTTTATG 420
Query 442 TTCGCTGAGATGGTCAATAACCGACCGGTTCTGTTTACTTATCATTCTAACACAGCCACG 501
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 421 TTCGCTGAGATGGTCAATAACCGACCGGTTCTGTTTACTTATTATTCTAACACAGCCACG 480
Query 502 TGGCATACTAAAGAAGCAGAGGATACAACAAATTGGG-TTTATAAGGAAAATAGCAATGT 560
||||||||||||||| ||||||||||||||||||||| | |||| |||| || |||||
Sbjct 481 TGGCATACTAAAGAAACAGAGGATACAACAAATTGGGAGGT-TAAGAAAAACAGTAATGT 539
Query 561 ATTATTCTTAAGCTTATCAAATCGACCTCACGAGAGTACTGTGATGAGCGTTGACGATGA 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 540 ATTATTCTTAAGCTTATCAAATCGACCTCACGAGAGTACTGTGATGAGCGTTGAC---GA 596
Query 621 TGGTTCGATGATAAACCGGTTTCCG-GCGATTTTGCGGCCGAGGATAAACCAAGACGCGA 679
||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 597 TGGTTCGATAATAAACCGGTTTCCGAG-GATTTTGCGGCCGAGGATAAACCAAGACGCGA 655
Query 680 TCAGACAATGCCCGTCGAGTGTCGGATTCAGCAGGAACGATCTAGAGAGTCAATTGTTGC 739
|||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||| |
Sbjct 656 TCAGACAATGCCCGTCGAGTGTTGGATTCAGTAGGAACGATCTAGAGAGTCAGTTGTTAC 715
Query 740 ATATACATGGAGATGAATATAAAGTGGTGATTAGGTTAGACACAGTAGATAATTCAAAGA 799
|||||||||||||||| || |||||||| ||||| ||||||| | | |||||||||||||
Sbjct 716 ATATACATGGAGATGAGTACAAAGTGGTTATTAGATTAGACAGAATTGATAATTCAAAGA 775
Query 800 TGAAGAAAATGATGAAGAGGTTAGAGGTTTGGGAAATAAGCTCAAATGGTGAGAAATGGG 859
|||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 776 TGAATAAAGTGATGAAGAGTTTAGAGGTTTGGGAAATAAGCTCAAATGGTGAGAAATGGG 835
Query 860 AGTTAGTGTCAAGAGCACCAAGTGAAGTGATCAGCAAAAAGCCTTGTGGTGTGATGATGG 919
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 836 AGTTAGTGTCAAGAGCACCAAGTGAAGTGATCAGCAAGAAGCCTTGTGGTGTGATGATGG 895
Query 920 GATGCTTAGAGAGGAGATTAGGGGTGATTAGAGTGGCTCTAATGACGAATCATGAAGGTT 979
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 GATGCTTAGAGAGGAGATTAGGGGTGATTAGAGTGGCTCTAATGACGAATCATGAAGGTC 955
Query 980 TATGGAATATAATTTGGTTAGATTATGACAAGCAGAAGGATAAGTGGGAGTGGGTTCCAC 1039
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 956 TATGGAATATAATTTGGTTGGATTATGACAAGCATAAGGATAAGTGGGAGTGGGTTCCAC 1015
Query 1040 TACCTGATTGTAGATTCTTGCAAGGCTCAAATATGGCCGGGATTAGTTTCTCCTCTGGCC 1099
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 TACCTGATTGTAGATTCTTGCAAGGCTCAAATATGGCCGGGATTAGTTTCTCCTCTGGCC 1075
Query 1100 TCACCTTCTCTTTGTAA 1116
|||||||||||||||||
Sbjct 1076 TCACCTTCTCTTTGTAA 1092
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55973607675
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5