BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941550
Length=1304
Score E
Sequences producing significant alignments: (Bits) Value
AT5G19990.1 | Symbols: RPT6A, ATSUG1 | regulatory particle trip... 2080 0.0
AT5G20000.1 | Symbols: | AAA-type ATPase family protein | chr5... 1953 0.0
> AT5G19990.1 | Symbols: RPT6A, ATSUG1 | regulatory particle triple-A
ATPase 6A | chr5:6752006-6755080 FORWARD LENGTH=1560
Length=1560
Score = 2080 bits (1126), Expect = 0.0
Identities = 1237/1291 (96%), Gaps = 6/1291 (0%)
Strand=Plus/Plus
Query 1 TTTGCTGCAATCACTGAGAAAATGGCAGCCGTAGGAGTTGATTCGAGGCGTCCTGAGACA 60
|||| | ||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 118 TTTGTTTCAATCACTGAGAAAATGGCGGCCGTAGGAGTAGATTCGAGGCGTCCTGAGACA 177
Query 61 GCGATGGAGGAAACCTGTAACGTGAAAGGAGCGGCGGCGAAACAAGGGGAAGGGCTTAAG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 GCGATGGAGGAAACCTGTAACGTGAAAGGAGCGGCGGCGAAACAAGGGGAAGGGCTTAAG 237
Query 121 CAGTACTATCTCCAGCACATCCATGAGCTCCAGCGCCAGCTCCGCCAGAAGACTAATAAC 180
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 238 CAGTACTATCTCCAGCACATCCATGAGCTCCAGCGCCAGCTTCGACAGAAGACTAATAAC 297
Query 181 CTCAATCGCCTTGAAGCTCAGAGGAACGAACTCAATTC-CAGAGTAAGAATGCTCAGAGA 239
|||||||||||||||||||| ||||| ||||||||||| | |||| ||||||||||||||
Sbjct 298 CTCAATCGCCTTGAAGCTCAAAGGAATGAACTCAATTCTC-GAGTGAGAATGCTCAGAGA 356
Query 240 AGAGTTGCAGCTGCTTCAAGAACCTGGGTCCTATGTGGGTGAAGTGGTAAAAGTGATGGG 299
|||||| ||||| |||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 357 AGAGTTACAGCTCCTTCAAGAACCTGGGTCCTATGTGGGAGAAGTGGTAAAAGTTATGGG 416
Query 300 AAAAAACAAGGTCTTGGTTAAGGTTCATCCAGAGGGAAAGTATGTTGTTGATATTGACAA 359
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 417 AAAGAACAAGGTCTTGGTTAAGGTTCATCCAGAGGGGAAGTATGTTGTTGATATTGACAA 476
Query 360 AAGTATAGATATAACAAAAATCACTCCATCCACGAGAGTTGCTCTTCGTAATGATAGCTA 419
||||||||| || || |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 477 AAGTATAGACATTACGAAAATCACTCCATCAACGAGAGTTGCTCTTCGTAATGATAGCTA 536
Query 420 TGTTCTCCACCTGG-TCTTGCCAAGTAAAGTAGATCCGC-TGGTTAACCTTATGAAAGTT 477
|||||||||||||| || ||||||||||||||||||| | ||||||||||||||||||||
Sbjct 537 TGTTCTCCACCTGGTTC-TGCCAAGTAAAGTAGATCC-CTTGGTTAACCTTATGAAAGTT 594
Query 478 GAAAAGGTTCCAGACTCCACATATGACATGATTGGTGGTCTTGACCAGCAAATTAAGGAA 537
|| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 595 GAGAAGGTTCCAGACTCCACCTATGACATGATTGGTGGTCTTGACCAGCAGATTAAGGAA 654
Query 538 ATAAAGGAGGTCATTGAGCTGCCAATCAAGCATCCTGAATTGTTTGAGTCTCTTGGAATT 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 ATAAAGGAGGTCATTGAGCTGCCAATCAAGCATCCTGAATTGTTTGAGTCTCTTGGAATT 714
Query 598 GCGCAGCCAAAGGGTGTGTTGTTATATGGTCCACCTGGAACTGGGAAGACACTTTTGGCT 657
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 715 GCGCAGCCAAAGGGTGTGTTGTTATACGGTCCACCTGGAACTGGGAAGACACTATTGGCT 774
Query 658 CGGGCTGTTGCACATCACACTGACTGTACTTTCATCAGAGTTTCTGGTTCAGAGCTGGTC 717
||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||
Sbjct 775 CGGGCTGTTGCACATCACACTGACTGTACTTTCATAAGAGTTTCTGGTTCCGAGCTTGTC 834
Query 718 CAGAAATACATTGGAGAAGGTTCTAGGATGGTCAGAGAACTTTTTGTGATGGCAAGGGAG 777
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 835 CAGAAATACATTGGAGAAGGTTCTAGAATGGTCAGAGAACTTTTTGTGATGGCAAGGGAG 894
Query 778 CATGCACCATCAATCATCTTCATGGATGAAATCGATAGTATTGGGTCTGCTCGTATGGAA 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 CATGCACCATCAATCATCTTCATGGATGAAATCGATAGTATTGGGTCTGCTCGTATGGAA 954
Query 838 TCTGGAAGTGGAAATGGTGACAGTGAGGTGCAAAGGACTATGCTTGAGCTTCTCAATCAA 897
||||||||||||||||||||||||||||||||| |||| ||||| |||||||||||||||
Sbjct 955 TCTGGAAGTGGAAATGGTGACAGTGAGGTGCAACGGACCATGCTCGAGCTTCTCAATCAA 1014
Query 898 CTTGATGGATTCGAAGCGTCAAACAAAATCAAGGTTTTGATGGCAACAAATCGTATTGAT 957
||||| || || |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1015 CTTGACGGTTTTGAAGCGTCAAACAAAATCAAGGTTTTGATGGCTACAAATCGTATTGAT 1074
Query 958 ATTCTGGATCAAGCTCTTCTCAGGCCTGGAAGGATTGATAGGAAAATTGAATTCCCTAAT 1017
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 1075 ATTCTGGATCAAGCTCTTCTCAGGCCTGGAAGAATTGATAGGAAAATTGAATTTCCTAAT 1134
Query 1018 CCTAATGAAGAGTCACGTTTTGATATCTTAAAGATACACTCAAGGAAAATGAATTTGATG 1077
||||||||||||||||||||||| ||||| ||||| ||||| ||||||||||||||||||
Sbjct 1135 CCTAATGAAGAGTCACGTTTTGACATCTTGAAGATTCACTCGAGGAAAATGAATTTGATG 1194
Query 1078 CGTGGAATCGATCTGAAAAAGATTGCAGAGAAGATGAATGGTGCTTCAGGTGCTGAGCTG 1137
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1195 CGTGGAATCGATCTGAAAAAGATTGCAGAGAAGATGAATGGCGCTTCAGGTGCTGAGCTG 1254
Query 1138 AAGGCTGTGTGCACGGAGGCGGGAATGTTTGCGCTGCGGGAGAGGAGAGTTCACGTGACA 1197
|||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||
Sbjct 1255 AAGGCTGTGTGCACGGAGGCGGGAATGTTTGCTCTGCGTGAGAGGAGAGTACACGTGACA 1314
Query 1198 CAAGAAGACTTTGAGATGGCGGTGGCGAAGGTAATGAAGAAAGACACAGAGAAGAACATG 1257
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 1315 CAAGAAGACTTTGAGATGGCGGTGGCCAAGGTAATGAAGAAAGACACGGAGAAGAACATG 1374
Query 1258 TCTCTGCGTAAGCTCTGGAAGTAGGAATCTC 1288
|||||||||||||| ||||||||||||||||
Sbjct 1375 TCTCTGCGTAAGCTGTGGAAGTAGGAATCTC 1405
> AT5G20000.1 | Symbols: | AAA-type ATPase family protein | chr5:6756633-6759750
FORWARD LENGTH=1742
Length=1742
Score = 1953 bits (1057), Expect = 0.0
Identities = 1215/1291 (94%), Gaps = 12/1291 (1%)
Strand=Plus/Plus
Query 1 TTTGCTGCAATCACTGAGAAAATGGCAGCCGTAGGAGTTGATTCGAGGCGTCCTGAGACA 60
|||||| ||||||| | | |||||| ||||||||||| || |||| | ||||| ||||
Sbjct 262 TTTGCTTCAATCACCGTGTTAATGGCGGCCGTAGGAGTGGAGGCGAGACCTCCTGTGACA 321
Query 61 GCGATGGAGGAAACCTGTAACGTGAAAGGAGCGGCGGCGAAACAAGGGGAAGGGCTTAAG 120
||||||||||||||||| ||||| || |||||||||||||||||||| |||||||||||
Sbjct 322 GCGATGGAGGAAACCTGCAACGTTAAGGGAGCGGCGGCGAAACAAGGAGAAGGGCTTAA- 380
Query 121 C-AGTACTATCTCCAGCA-CATCCATGAGCTCCAGCGCCAGCTCCGCCAGAAGAC-TAAT 177
| ||||||| |||||||| | || ||||||||||||||| || ||| | ||| | | ||
Sbjct 381 CAAGTACTACCTCCAGCATC-TCGATGAGCTCCAGCGCCTGCAACGCGAAAAGTCGT-AT 438
Query 178 AACCTCAATCGCCTTGAAGCTCAGAGGAACGAACTCAATTC-CAGAGTAAGAATGCTCAG 236
||||| ||||| ||||||||||||||||| ||||||||||| | ||||| ||||||||||
Sbjct 439 AACCTTAATCGTCTTGAAGCTCAGAGGAATGAACTCAATTCTC-GAGTACGAATGCTCAG 497
Query 237 AGAAGAGTTGCAGCTGCTTCAAGAACCTGGGTCCTATGTGGGTGAAGTGGTAAAAGTGAT 296
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 498 AGAAGAGTTACAGCTCCTTCAAGAACCTGGGTCCTATGTGGGTGAAGTGGTAAAAGTGAT 557
Query 297 GGGAAAAAACAAGGTCTTGGTTAAGGTTCATCCAGAGGGAAAGTATGTTGTTGATATTGA 356
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 558 GGGAAAAAACAAGGTCTTGGTTAAGGTTCATCCAGAGGGGAAGTATGTTGTCGATATTGA 617
Query 357 CAAAAGTATAGATATAACAAAAATCACTCCATCCACGAGAGTTGCTCTTCGTAATGATAG 416
|||||||||||| ||||| ||| |||||||||| |||||||||||||| |||||||||||
Sbjct 618 CAAAAGTATAGACATAACGAAACTCACTCCATCAACGAGAGTTGCTCTCCGTAATGATAG 677
Query 417 CTATGTTCTCCACCTGG-TCTTGCCAAGTAAAGTAGATCCGC-TGGTTAACCTTATGAAA 474
||||||||||||||||| || ||||||||||||||||||| | |||||||||||||||||
Sbjct 678 CTATGTTCTCCACCTGGTTC-TGCCAAGTAAAGTAGATCC-CTTGGTTAACCTTATGAAA 735
Query 475 GTTGAAAAGGTTCCAGACTCCACATATGACATGATTGGTGGTCTTGACCAGCAAATTAAG 534
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 736 GTTGAGAAGGTTCCAGACTCCACATATGACATGATTGGTGGTCTTGACCAGCAAATCAAG 795
Query 535 GAAATAAAGGAGGTCATTGAGCTGCCAATCAAGCATCCTGAATTGTTTGAGTCTCTTGGA 594
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 796 GAAATAAAGGAGGTCATTGAACTGCCAATCAAGCATCCTGAATTGTTTGAGTCTCTTGGA 855
Query 595 ATTGCGCAGCCAAAGGGTGTGTTGTTATATGGTCCACCTGGAACTGGGAAGACACTTTTG 654
|||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||
Sbjct 856 ATTGCGCAGCCAAAGGGTGTGTTGTTGTACGGTCCACCTGGAACTGGGAAGACACTATTG 915
Query 655 GCTCGGGCTGTTGCACATCACACTGACTGTACTTTCATCAGAGTTTCTGGTTCAGAGCTG 714
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 916 GCTCGGGCTGTGGCACATCACACTGACTGTACTTTCATCAGAGTTTCTGGTTCTGAGCTG 975
Query 715 GTCCAGAAATACATTGGAGAAGGTTCTAGGATGGTCAGAGAACTTTTTGTGATGGCAAGG 774
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 976 GTCCAGAAATACATTGGAGAAGGTTCTAGAATGGTCAGAGAACTTTTTGTGATGGCAAGG 1035
Query 775 GAGCATGCACCATCAATCATCTTCATGGATGAAATCGATAGTATTGGGTCTGCTCGTATG 834
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1036 GAGCATGCACCATCAATCATCTTCATGGATGAAATCGATAGTATCGGGTCTGCTCGTATG 1095
Query 835 GAATCTGGAAGTGGAAATGGTGACAGTGAGGTGCAAAGGACTATGCTTGAGCTTCTCAAT 894
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1096 GAATCTGGTAGTGGAAATGGTGACAGTGAGGTGCAAAGGACTATGCTTGAGCTTCTCAAT 1155
Query 895 CAACTTGATGGATTCGAAGCGTCAAACAAAATCAAGGTTTTGATGGCAACAAATCGTATT 954
|||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1156 CAACTTGACGGATTCGAGGCGTCAAACAAAATCAAGGTTTTGATGGCTACAAATCGTATT 1215
Query 955 GATATTCTGGATCAAGCTCTTCTCAGGCCTGGAAGGATTGATAGGAAAATTGAATTCCCT 1014
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 1216 GATATTCTGGATCAAGCTCTTCTCCGGCCTGGAAGGATTGATAGGAAAATTGAATTTCCT 1275
Query 1015 AATCCTAATGAAGAGTCACGTTTTGATATCTTAAAGATACACTCAAGGAAAATGAATTTG 1074
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1276 AATCCTAATGAAGAGTCACGTTTTGATATCTTGAAGATACACTCAAGGAAAATGAATTTG 1335
Query 1075 ATGCGTGGAATCGATCTGAAAAAGATTGCAGAGAAGATGAATGGTGCTTCAGGTGCTGAG 1134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1336 ATGCGTGGAATCGATCTGAAAAAGATTGCAGAGAAGATGAATGGTGCTTCAGGTGCTGAG 1395
Query 1135 CTGAAGGCTGTGTGCACGGAGGCGGGAATGTTTGCGCTGCGGGAGAGGAGAGTTCACGTG 1194
||||||||||| |||||||||||||| |||||||| || || ||||||||||| || |||
Sbjct 1396 CTGAAGGCTGTATGCACGGAGGCGGGCATGTTTGCACTTCGTGAGAGGAGAGTACATGTG 1455
Query 1195 ACACAAGAAGACTTTGAGATGGCGGTGGCGAAGGTAATGAAGAAAGACACAGAGAAGAAC 1254
|| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1456 ACTCAGGAAGACTTTGAGATGGCTGTGGCGAAGGTAATGAAGAAAGACACAGAGAAGAAC 1515
Query 1255 ATGTCTCTGCGTAAGCTCTGGAAGTAGGAAT 1285
|||||||||||||||||||||||||||||||
Sbjct 1516 ATGTCTCTGCGTAAGCTCTGGAAGTAGGAAT 1546
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64156296510
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5