BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941552
Length=706
Score E
Sequences producing significant alignments: (Bits) Value
AT5G20010.1 | Symbols: RAN-1, RAN1, ATRAN1 | RAS-related nuclea... 1140 0.0
AT5G20020.1 | Symbols: RAN2 | RAS-related GTP-binding nuclear p... 1002 0.0
AT5G55190.1 | Symbols: RAN3, ATRAN3 | RAN GTPase 3 | chr5:22392... 747 0.0
> AT5G20010.1 | Symbols: RAN-1, RAN1, ATRAN1 | RAS-related nuclear
protein-1 | chr5:6760284-6762094 FORWARD LENGTH=1093
Length=1093
Score = 1140 bits (617), Expect = 0.0
Identities = 675/702 (96%), Gaps = 7/702 (1%)
Strand=Plus/Plus
Query 8 CGATTCCGAAAACATGGCTCTACCTAACCAGCAAACCGTAGATTA-CCCAAGCTTCAAGC 66
||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 68 CGATTGCGAAAACATGGCTCTACCTAACCAGCAAACCGTAGATTATCCC-AGCTTCAAGC 126
Query 67 TCGTCATTGTTGGTGATGGAGGCACAGGGAAGACTACTTTTGTGAAAAGACATCTTACTG 126
| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 127 TTGTCATTGTTGGTGATGGAGGCACAGGGAAGACTACTTTTGTTAAGAGACATCTTACTG 186
Query 127 GAGAGTTTGAGAAGAAGTATGAACCTACTATTGGTGTGGAGGTTCATCCATTAGATTTCT 186
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 187 GGGAGTTTGAGAAGAAGTATGAACCTACTATTGGTGTGGAGGTTCATCCATTAGATTTCT 246
Query 187 TCACAAACTGTGGCAAGATCCGTTTTTACTGCTGGGACACTGCGGGGCAAGAGAAATTTG 246
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 247 TCACAAACTGTGGCAAGATCCGTTTTTACTGCTGGGACACTGCTGGACAAGAGAAATTTG 306
Query 247 GTGGCCTTAGGGATGGATACTACATTCATGGTCAATGTGCCATAATAATGTTTGACGTCA 306
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 307 GTGGCCTTAGGGATGGATACTACATCCATGGTCAATGTGCTATAATAATGTTTGACGTCA 366
Query 307 CAGCAAGGCTCACATACAAGAACGTTCCGACATGGCACCGTGATCTCTGCAGGGTGTGTG 366
||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 367 CAGCACGGCTCACATACAAGAATGTTCCGACATGGCACCGTGATCTCTGCAGGGTGTGTG 426
Query 367 AAAACATCCCGATTGTTCTGTGTGGGAACAAAGTTGATGTGAAGAACAGGCAAGTGAAGG 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 427 AAAACATCCCGATTGTTCTGTGTGGGAACAAAGTTGATGTGAAGAACAGGCAAGTGAAGG 486
Query 427 CAAAGCAGGTGACATTCCACAGGAAGAAGAATCTGCAGTACTATGAGATATCGGCAAAGA 486
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 487 CAAAGCAGGTTACATTCCACAGGAAGAAGAATCTGCAGTACTATGAGATATCAGCAAAGA 546
Query 487 GCAACTACAACTTTGAGAAGCCCTTCTTGTACCTTGCTAGAAAACTGGCTGGGGACCAAA 546
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 547 GCAACTACAACTTTGAGAAGCCTTTCTTGTACCTTGCTAGAAAACTGGCTGGAGACCAAA 606
Query 547 ACCTTCACTTTGTGGAGACACCAGCTCTTGCTCCACCAGAGGTTCACATTGACATTGCTG 606
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 607 ACCTTCACTTTGTGGAGACACCAGCGCTTGCTCCACCAGAGGTTCACATTGACATTGCTG 666
Query 607 ATCAGCAGAAGAACGAGGCCGAGCTCTTACAGGCTGCAGCTCAGCCACTCCCCGATGATG 666
||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |
Sbjct 667 ATCAGCAGAAGAACGAGGCCGAGCTCTTACAGGCTGCAGCTCAACCCCTCCCCGATGACG 726
Query 667 ATGATGATGTCTTTGAGTAAATC-T--T-CTA-AATGTCTGC 703
|||||||| |||||||||||||| | | ||| |||||||||
Sbjct 727 ATGATGATATCTTTGAGTAAATCATCCTTCTAGAATGTCTGC 768
> AT5G20020.1 | Symbols: RAN2 | RAS-related GTP-binding nuclear
protein 2 | chr5:6762724-6764671 FORWARD LENGTH=1049
Length=1049
Score = 1002 bits (542), Expect = 0.0
Identities = 645/694 (93%), Gaps = 9/694 (1%)
Strand=Plus/Plus
Query 19 ACATGGCTCTACCTAACCAGCAAACCGTAGATTACCCAAGCTTCAAGCTCGTCATTGTTG 78
||||||||||||||||||| |||||||||||||| || ||||||||||||||||| ||||
Sbjct 92 ACATGGCTCTACCTAACCAACAAACCGTAGATTATCCTAGCTTCAAGCTCGTCATCGTTG 151
Query 79 GTGATGGAGGCACAGGGAAGACTACTTTTGTGAAAAGACATCTTACTGGAGAGTTTGAGA 138
||||||||||||||||||| || || |||||||| |||||||||||||| ||||||||||
Sbjct 152 GTGATGGAGGCACAGGGAAAACGACCTTTGTGAAGAGACATCTTACTGGGGAGTTTGAGA 211
Query 139 AGAAGTATGAACCTACTATTGGTGTGGAGGTTCATCCATTAGATTTCTTCACAAACTGTG 198
||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |
Sbjct 212 AGAAGTATGAACCTACTATTGGTGTGGAGGTTCATCCTTTGGATTTCTTCACAAACTGCG 271
Query 199 GCAAGATCCGTTTTTACTGCTGGGACACTGCGGGGCAAGAGAAATTTGGTGGCCTTAGGG 258
| ||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||
Sbjct 272 GAAAGATCCGTTTTTACTGCTGGGATACTGCTGGACAAGAGAAATTTGGTGGCCTTAGGG 331
Query 259 ATGGATACTACATTCATGGTCAATGTGCCATAATAATGTTTGACGTCACAGCAAGGCTCA 318
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 332 ATGGATACTACATCCATGGTCAATGTGCGATAATAATGTTTGACGTCACAGCAAGGCTCA 391
Query 319 CATACAAGAACGTTCCGACATGGCACCGTGATCTCTGCAGGGTGTGTGAAAACATCCCGA 378
|||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 392 CATACAAGAATGTTCCGACATGGCATCGTGATCTTTGCAGGGTGTGTGAAAACATCCCGA 451
Query 379 TTGTTCTGTGTGGGAACAAAGTTGATGTGAAGAACAGGCAAGTGAAGGCAAAGCAGGTGA 438
||||||||||||| |||||||| |||||||||||||||||||||||||||||||| || |
Sbjct 452 TTGTTCTGTGTGGAAACAAAGTCGATGTGAAGAACAGGCAAGTGAAGGCAAAGCAAGTCA 511
Query 439 CATTCCACAGGAAGAAGAATCTGCAGTACTATGAGATATCGGCAAAGAGCAACTACAACT 498
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 512 CATTCCACAGGAAGAAGAATCTGCAGTACTATGAGATATCAGCAAAGAGCAACTACAACT 571
Query 499 TTGAGAAGCCCTTCTTGTACCTTGCTAGAAAACTGGCTGGGGACCAAAACCTTCACTTTG 558
| |||||||| ||||||||||||||||| ||||||||||| ||||| |||||||||||||
Sbjct 572 TCGAGAAGCCTTTCTTGTACCTTGCTAGGAAACTGGCTGGAGACCAGAACCTTCACTTTG 631
Query 559 TGGAGACACCAGCTCTTGCTCCACCAGAGGTTCACATTGACATTGCTGATCAGCAGAAGA 618
||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||| |||
Sbjct 632 TGGAGTCACCAGCTCTTGCTCCACCAGAGGTTCACCTTGACATTGCTGCTCAGCAGCAGA 691
Query 619 ACGAGGCCGAGCTCTTACAG--GCTGCAGCTCAGCCACTCCCCGATGATGATGATGATGT 676
| |||||||| |||| ||| |||||||||||||| |||||||||||||||||||| |
Sbjct 692 ATGAGGCCGA--TCTTGCAGCTGCTGCAGCTCAGCCTCTCCCCGATGATGATGATGACG- 748
Query 677 C-TTTGAGTAAA-TCTTCTAAA--TGTCTGCTGT 706
| |||||||||| ||||| ||| ||||||||||
Sbjct 749 CATTTGAGTAAAATCTTCCAAAAATGTCTGCTGT 782
> AT5G55190.1 | Symbols: RAN3, ATRAN3 | RAN GTPase 3 | chr5:22392176-22394172
FORWARD LENGTH=990
Length=990
Score = 747 bits (404), Expect = 0.0
Identities = 578/661 (87%), Gaps = 16/661 (2%)
Strand=Plus/Plus
Query 21 ATGGCTCTACCTAACCAGCAAACCGTAGATTACCCAAGCTTCAAGCTCGTCATTGTTGGT 80
|||||||||||||||||||||||||| |||||||| |||||||||||||| || |||||
Sbjct 110 ATGGCTCTACCTAACCAGCAAACCGTGGATTACCCTAGCTTCAAGCTCGTTATCGTTGGC 169
Query 81 GATGGAGGCACAGGGAAGACTACTTTTGTGAAA-AGACATCTTACTGGAGAGTTTGAGAA 139
|||||||||||||||||||| || ||||| ||| ||||||||||||||||||||||||||
Sbjct 170 GATGGAGGCACAGGGAAGACCACATTTGT-AAAGAGACATCTTACTGGAGAGTTTGAGAA 228
Query 140 GAAGTATGAACCTACTATTGGTGTGGAGGTTCATCCA-TTAGATTTCTTCACAAACTGTG 198
|||||||||||| ||||||||||| ||||||||||| || ||||||||||| |||||||
Sbjct 229 GAAGTATGAACCCACTATTGGTGTTGAGGTTCATCCTCTT-GATTTCTTCACTAACTGTG 287
Query 199 GCAAGATCCGTTTTTACTGCTGGGACACTGCGGGGCAAGAGAAATTTGGTGGCCTTAGGG 258
||||||||||||| ||||| ||||| ||||| || ||||||||||||||||| |||||||
Sbjct 288 GCAAGATCCGTTTCTACTGTTGGGATACTGCTGGCCAAGAGAAATTTGGTGGTCTTAGGG 347
Query 259 ATGGATACTACATTCATGGTCAATGTGCCATAATAATGTTTGACGTCACAGCAAGGCTCA 318
|||| |||||||| ||||| |||||||| || || |||||||| ||||||||| | || |
Sbjct 348 ATGGTTACTACATCCATGGACAATGTGCTATCATCATGTTTGATGTCACAGCACGACTGA 407
Query 319 CATACAAGAACGTTCCGACATGGCACCGTGATCTCTGCAGGGTGTGTGAAAACATCCCGA 378
|||||||||| ||||| ||||||||||||||||| |||||||| |||||||||||||| |
Sbjct 408 CATACAAGAATGTTCCAACATGGCACCGTGATCTTTGCAGGGTTTGTGAAAACATCCCAA 467
Query 379 TTGTTCTGTGTGGGAACAAAGTTGATGTGAAGAACAGGCAAGTGAAGGCAAAGCAGGTGA 438
||||||| |||||||| |||||||||||||||||||||||||| ||||| |||||||| |
Sbjct 468 TTGTTCTTTGTGGGAATAAAGTTGATGTGAAGAACAGGCAAGTCAAGGCCAAGCAGGTAA 527
Query 439 CATTCCACAGGAAGAAGAATCTGCAGTACTATGAGATATCGGCAAAGAGCAACTACAACT 498
||||||||||||||||||| || ||||| || |||||||| || ||||||||||||||||
Sbjct 528 CATTCCACAGGAAGAAGAACCTCCAGTATTACGAGATATCTGCCAAGAGCAACTACAACT 587
Query 499 TTGAGAAGCCCTTCTTGTACCTTGCTAGAAAACTGGCTGGGGAC-CAAAACCTTCACTTT 557
| |||||||| |||||||||||||||||||| || || |||||| | || | ||||||||
Sbjct 588 TCGAGAAGCCATTCTTGTACCTTGCTAGAAAGCTCGCCGGGGACGCTAATC-TTCACTTT 646
Query 558 GTGGAGA-CACCAGCTCTTGCTCCACCAGAGGTTCACATTGACATTG-CTGATCAGCAGA 615
||||| | |||| || |||||||| || || ||||| || ||| ||| ||| |||||||
Sbjct 647 GTGGA-ATCACCTGCCCTTGCTCCCCCGGAAGTTCAAATCGAC-TTGGCTGCTCAGCAGC 704
Query 616 AGAACGAGGCCGAGCTCTT-A-CAGGCTGCA-GCTCAGCCACTCCCCGATGATGATGATG 672
|| | ||||| ||||| | | ||| | ||| | ||||||||| || ||||| |||||||
Sbjct 705 AGCATGAGGCGGAGCT-TGCAGCAG-CAGCAAG-TCAGCCACTTCCTGATGACGATGATG 761
Query 673 A 673
|
Sbjct 762 A 762
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34209454107
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5