BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941554
Length=707
Score E
Sequences producing significant alignments: (Bits) Value
AT5G20020.1 | Symbols: RAN2 | RAS-related GTP-binding nuclear p... 1125 0.0
AT5G20010.1 | Symbols: RAN-1, RAN1, ATRAN1 | RAS-related nuclea... 1037 0.0
AT5G55080.1 | Symbols: AtRAN4, RAN4 | ras-related nuclear prote... 479 2e-134
> AT5G20020.1 | Symbols: RAN2 | RAS-related GTP-binding nuclear
protein 2 | chr5:6762724-6764671 FORWARD LENGTH=1049
Length=1049
Score = 1125 bits (609), Expect = 0.0
Identities = 662/688 (96%), Gaps = 2/688 (0%)
Strand=Plus/Plus
Query 19 ACATGGCTCTTCCTAACCAGCAAACCGTCGATTACCCTAGCTTCAAGCTCGTCATCGTTG 78
|||||||||| |||||||| |||||||| ||||| |||||||||||||||||||||||||
Sbjct 92 ACATGGCTCTACCTAACCAACAAACCGTAGATTATCCTAGCTTCAAGCTCGTCATCGTTG 151
Query 79 GTGATGGAGGCACAGGGAAAACAACTTTTGTGAAGAGACATCTTACTGGGGAGTTTGAGA 138
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 152 GTGATGGAGGCACAGGGAAAACGACCTTTGTGAAGAGACATCTTACTGGGGAGTTTGAGA 211
Query 139 AGAAGTATGAACCTACTATTGGTGTGGAGGTTCATCCTTTGGATTTCTTCACAAACTGTG 198
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 212 AGAAGTATGAACCTACTATTGGTGTGGAGGTTCATCCTTTGGATTTCTTCACAAACTGCG 271
Query 199 GCAAGATCCGTTTTTACTGCTGGGATACTGCTGGACAAGAGAAATTTGGTGGCCTCAGGG 258
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 272 GAAAGATCCGTTTTTACTGCTGGGATACTGCTGGACAAGAGAAATTTGGTGGCCTTAGGG 331
Query 259 ATGGATACTACATCCATGGTCAATGTGCCATAATAATGTTTGACGTCACAGCAAGGCTCA 318
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 332 ATGGATACTACATCCATGGTCAATGTGCGATAATAATGTTTGACGTCACAGCAAGGCTCA 391
Query 319 CATACAAGAATGTTCCGACATGGCACCGTGATCTCTGCAGGGTGTGTGAAAACATCCCGA 378
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 392 CATACAAGAATGTTCCGACATGGCATCGTGATCTTTGCAGGGTGTGTGAAAACATCCCGA 451
Query 379 TTGTTCTGTGTGGGAACAAAGTCGATGTGAAGAACAGGCAAGTGAAGGCAAAGCAGGTGA 438
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 452 TTGTTCTGTGTGGAAACAAAGTCGATGTGAAGAACAGGCAAGTGAAGGCAAAGCAAGTCA 511
Query 439 CATTCCACAGGAAGAAGAATCTGCAGTACTATGAGATATCGGCAAAGAGCAACTACAACT 498
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 512 CATTCCACAGGAAGAAGAATCTGCAGTACTATGAGATATCAGCAAAGAGCAACTACAACT 571
Query 499 TCGAGAAGCCTTTCTTGTACCTTGCTAGGAAACTGGCGGGAGACCAAAACCTTCACTTTG 558
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 572 TCGAGAAGCCTTTCTTGTACCTTGCTAGGAAACTGGCTGGAGACCAGAACCTTCACTTTG 631
Query 559 TCGAGTCACCAGCTCTTGCTCCACCAGAGGTTCACCTTGACATTGCTGCTCAGCAGCAGA 618
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 632 TGGAGTCACCAGCTCTTGCTCCACCAGAGGTTCACCTTGACATTGCTGCTCAGCAGCAGA 691
Query 619 ACGAGGCCGATCTCGCAGCTGCCGCAGCTCAGCCTCTCCCCGATGACGATGATGATGCAT 678
| ||||||||||| |||||||| ||||||||||||||||||||||| |||||||| ||||
Sbjct 692 ATGAGGCCGATCTTGCAGCTGCTGCAGCTCAGCCTCTCCCCGATGATGATGATGACGCAT 751
Query 679 TTGAGTAAA-TCTTCCAAAA-TGTCTGC 704
||||||||| |||||||||| |||||||
Sbjct 752 TTGAGTAAAATCTTCCAAAAATGTCTGC 779
> AT5G20010.1 | Symbols: RAN-1, RAN1, ATRAN1 | RAS-related nuclear
protein-1 | chr5:6760284-6762094 FORWARD LENGTH=1093
Length=1093
Score = 1037 bits (561), Expect = 0.0
Identities = 651/694 (94%), Gaps = 7/694 (1%)
Strand=Plus/Plus
Query 3 CTCTCGAATTCCGAAAACATGGCTCTTCCTAACCAGCAAACCGTCGATTA-CCCTAGCTT 61
||| || ||| ||||||||||||||| ||||||||||||||||| ||||| ||| |||||
Sbjct 64 CTCGCG-ATTGCGAAAACATGGCTCTACCTAACCAGCAAACCGTAGATTATCCC-AGCTT 121
Query 62 CAAGCTCGTCATCGTTGGTGATGGAGGCACAGGGAAAACAACTTTTGTGAAGAGACATCT 121
|||||| ||||| ||||||||||||||||||||||| || |||||||| |||||||||||
Sbjct 122 CAAGCTTGTCATTGTTGGTGATGGAGGCACAGGGAAGACTACTTTTGTTAAGAGACATCT 181
Query 122 TACTGGGGAGTTTGAGAAGAAGTATGAACCTACTATTGGTGTGGAGGTTCATCCTTTGGA 181
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 182 TACTGGGGAGTTTGAGAAGAAGTATGAACCTACTATTGGTGTGGAGGTTCATCCATTAGA 241
Query 182 TTTCTTCACAAACTGTGGCAAGATCCGTTTTTACTGCTGGGATACTGCTGGACAAGAGAA 241
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 242 TTTCTTCACAAACTGTGGCAAGATCCGTTTTTACTGCTGGGACACTGCTGGACAAGAGAA 301
Query 242 ATTTGGTGGCCTCAGGGATGGATACTACATCCATGGTCAATGTGCCATAATAATGTTTGA 301
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 302 ATTTGGTGGCCTTAGGGATGGATACTACATCCATGGTCAATGTGCTATAATAATGTTTGA 361
Query 302 CGTCACAGCAAGGCTCACATACAAGAATGTTCCGACATGGCACCGTGATCTCTGCAGGGT 361
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 362 CGTCACAGCACGGCTCACATACAAGAATGTTCCGACATGGCACCGTGATCTCTGCAGGGT 421
Query 362 GTGTGAAAACATCCCGATTGTTCTGTGTGGGAACAAAGTCGATGTGAAGAACAGGCAAGT 421
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 422 GTGTGAAAACATCCCGATTGTTCTGTGTGGGAACAAAGTTGATGTGAAGAACAGGCAAGT 481
Query 422 GAAGGCAAAGCAGGTGACATTCCACAGGAAGAAGAATCTGCAGTACTATGAGATATCGGC 481
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 482 GAAGGCAAAGCAGGTTACATTCCACAGGAAGAAGAATCTGCAGTACTATGAGATATCAGC 541
Query 482 AAAGAGCAACTACAACTTCGAGAAGCCTTTCTTGTACCTTGCTAGGAAACTGGCGGGAGA 541
|||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||
Sbjct 542 AAAGAGCAACTACAACTTTGAGAAGCCTTTCTTGTACCTTGCTAGAAAACTGGCTGGAGA 601
Query 542 CCAAAACCTTCACTTTGTCGAGTCACCAGCTCTTGCTCCACCAGAGGTTCACCTTGACAT 601
|||||||||||||||||| ||| ||||||| ||||||||||||||||||||| |||||||
Sbjct 602 CCAAAACCTTCACTTTGTGGAGACACCAGCGCTTGCTCCACCAGAGGTTCACATTGACAT 661
Query 602 TGCTGCTCAGCAGCAGAACGAGGCCGATCTCGCAGCTGCC-GCAGCTCAGCCTCTCCCCG 660
||||| ||||||| ||||||||||||| ||| | | | | |||||||| || |||||||
Sbjct 662 TGCTGATCAGCAGAAGAACGAGGCCGAGCTCTTA-CAGGCTGCAGCTCAACCCCTCCCCG 720
Query 661 ATGACGATGATGATG-CATTTGAGTAAATCTTCC 693
|||||||||||||| | |||||||||||| |||
Sbjct 721 ATGACGATGATGATATC-TTTGAGTAAATCATCC 753
> AT5G55080.1 | Symbols: AtRAN4, RAN4 | ras-related nuclear protein
4 | chr5:22351576-22353058 REVERSE LENGTH=669
Length=669
Score = 479 bits (259), Expect = 2e-134
Identities = 462/559 (83%), Gaps = 18/559 (3%)
Strand=Plus/Plus
Query 21 ATGGCTCTT-CCTAACCAGCAAACCGTCGA-TTACCCTAGCTTCAAGC-TCGTCATCGTT 77
|||||| || |||||||| |||| |||||| ||| || | |||||| | || |||| |||
Sbjct 1 ATGGCT-TTACCTAACCAACAAAACGTCGATTTA-CCAACCTTCAAACTTC-TCATTGTT 57
Query 78 GGTGATGGAGGCACAGGGAAAACAACTTTTGTGAAGAGACATCTTACTGGGGAGTTTGAG 137
|||||||||||||| || ||||| || ||| | ||||||||||| |||||||| ||||||
Sbjct 58 GGTGATGGAGGCACTGGAAAAACCACCTTTCTCAAGAGACATCTGACTGGGGAATTTGAG 117
Query 138 AAGAAGTA-TGAACCTACTATTGGTGTGGAGGTTCATCCTTTGGATTTCTTCACAAACTG 196
| || || |||||||||| |||||||||| || ||||||| ||||||||||| ||| |
Sbjct 118 CATAA-TACTGAACCTACTCTTGGTGTGGATATTTATCCTTTAGATTTCTTCACTAACCG 176
Query 197 TGGCAAGATCCGTTTTTACTGCTGGGATACTGCTGGACAAGAGAAATTTGGTGGCCTCAG 256
|||||||||||||| | |||||||||||||||||||||||||||| | |||| ||||
Sbjct 177 CGGCAAGATCCGTTTCGAATGCTGGGATACTGCTGGACAAGAGAAATATAGTGGTCTCAA 236
Query 257 GGATGGATACTACATCCATGGTCAATGTGCCATAATAATGTTTGACGTCACAGCAAGGCT 316
||||| |||||||||||||||||||||||| ||||| |||||||| ||||||||| |||
Sbjct 237 GGATGCATACTACATCCATGGTCAATGTGCGATAATTATGTTTGATGTCACAGCACGGCA 296
Query 317 CACATACAAGAATGTTCCGACATGGCACCGTGATCTCTGCAGGGTGTGTGAA-AACATCC 375
|||||||| ||| || | |||| ||||||||||| |||||||||| || ||||| |
Sbjct 297 CACATACATGAACATTGATAGATGGTACCGTGATCTCCGCAGGGTGTGC-AAGAACATTC 355
Query 376 CGATTGTTCTGTGTGGGAACAAAGTCGATGTGAAGAACAGGCAAGTGAAGGCAAAGCAGG 435
|||||||||||||||| |||||||| |||||| || || ||| | ||| | ||||| |
Sbjct 356 CGATTGTTCTGTGTGGTAACAAAGTTGATGTGCCGAGTAGACAAATCAAGCCGAAGCACG 415
Query 436 TGA-CATTCCACAGGAAGAAGAATCTGCAGTACTATGAGATATCGGCAAAGAGCAACTAC 494
| | | | ||||||||||||| |||||||||||||||||| || || |||| ||| | |
Sbjct 416 T-ATCGTACCACAGGAAGAAGTGTCTGCAGTACTATGAGATGTCTGCGAAGAACAATTGC 474
Query 495 AACTTCGAGAAGCC-TTTCTTGTACCTTGCTAGGA-AACTGGCGGGAGAC-CAAAACCTT 551
|| || ||||| || ||| ||||| |||||||| | || || | |||||| |||||| ||
Sbjct 475 AATTTTGAGAAACCCTTT-TTGTATCTTGCTAGAAGAATTG-CTGGAGACGCAAAACTTT 532
Query 552 CACTTTGTCGAGTCACCAG 570
| |||||| ||||||||||
Sbjct 533 C-CTTTGTGGAGTCACCAG 550
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34259688254
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5