BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg941557

Length=278
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G20045.1 | Symbols:  | unknown protein; Has 35333 Blast hits...   390    3e-108


> AT5G20045.1 | Symbols:  | unknown protein; Has 35333 Blast hits 
to 34131 proteins in 2444 species: Archae - 798; Bacteria 
- 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses 
- 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr5:6771558-6772188 
REVERSE LENGTH=631
Length=631

 Score =  390 bits (211),  Expect = 3e-108
 Identities = 248/265 (94%), Gaps = 6/265 (2%)
 Strand=Plus/Plus

Query  3    TCCAAATTAAGGTGCC-T--GATGCAAAGGTTACAAACAAGTTCTCGGCCATCTGAAGAG  59
            |||||||||||| ||| |  ||||||||||||||||| ||||||||||||||||||||||
Sbjct  11   TCCAAATTAAGGCGCCATAAGATGCAAAGGTTACAAATAAGTTCTCGGCCATCTGAAGAG  70

Query  60   TTTCTGATTAACCTCTCGCCGGATTCCGCAAGCCCTGACGGTCTCGTGGTCTATGACGAC  119
            ||||||||||||||||||  ||||||||||||||||||||||||||||||||| ||||||
Sbjct  71   TTTCTGATTAACCTCTCGGTGGATTCCGCAAGCCCTGACGGTCTCGTGGTCTACGACGAC  130

Query  120  ATAGCCAAGAAGGAACTGTTTCTACACAACAATAGTTACAAGTCTGCTAATGGAGAGAGA  179
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  131  ATAGCCAAGAAGGAACTGTCTCTACACAACAATAGTTACAAGTCTGCTAATGGAGAGAGA  190

Query  180  GCTATTCATCTAATCCCTCTTGTTCTCTTTCTATGTGGTTTTGTTCTTTGGGTTTTCTCA  239
            |||||||| ||||||||| ||||||||||||||||||||||| | |||||||||||||||
Sbjct  191  GCTATTCACCTAATCCCTATTGTTCTCTTTCTATGTGGTTTTATGCTTTGGGTTTTCTCA  250

Query  240  AATGCAACTCATGTATAATTACTAT  264
            | ||||||| ||  |||||||||||
Sbjct  251  AGTGCAACT-AT--ATAATTACTAT  272



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12768008246


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5