BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941559
Length=801
Score E
Sequences producing significant alignments: (Bits) Value
AT5G20060.2 | Symbols: | alpha/beta-Hydrolases superfamily pro... 1284 0.0
> AT5G20060.2 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr5:6776236-6779614 FORWARD LENGTH=1490
Length=1490
Score = 1284 bits (695), Expect = 0.0
Identities = 747/773 (97%), Gaps = 0/773 (0%)
Strand=Plus/Plus
Query 14 TCCTCCAGTATGAGTATCTCCGGTGCTGCAGTTGGTTCAGGCAGAAATTTAAGAAGAGCT 73
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 556 TCCTCCAGTATGAGTATCTCCGGTGCTGCAGTTGGTTCAGGCAGAAATTTAAGAAGAGCG 615
Query 74 GTAGAGTTTGGGAAAACTCATGTGGTTAGGCCTAAAGGGAAACATCAAGCAACTATTGTC 133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 616 GTAGAGTTTGGGAAAACTCATGTGGTTAGGCCTAAAGGGAAACATCAAGCAACTATTGTC 675
Query 134 TGGCTACATGGGCTTGGGGACAATGGCTCGAGCTGGTCCCAGCTTTTGGAGACCCTTCCC 193
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 676 TGGTTACATGGGCTTGGGGACAATGGCTCGAGCTGGTCCCAGCTTTTGGAGACCCTTCCC 735
Query 194 CTTCCAAATATCAAATGGATATGCCCGACTGCTCCTTCTCAGCCAATAAGTCTGTTTGGT 253
|||||||||||||||||||| |||||||||||||||||||| ||||||||| | ||||||
Sbjct 736 CTTCCAAATATCAAATGGATTTGCCCGACTGCTCCTTCTCAACCAATAAGTTTATTTGGT 795
Query 254 GGTTTTCCCTCCACAGCTTGGTTTGATGTTGTGGACATCAATGAAGATGGACCTGATGAC 313
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 796 GGTTTTCCCTCCACAGCTTGGTTTGATGTTGTGGACATCAATGAAGATGGACCTGATGAT 855
Query 314 ATGGAAGGATTGGATGTGGCTGCTGCACATGTTGCAAATCTGTTGTCGAATGAGCCTGCT 373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 856 ATGGAAGGATTGGATGTGGCTGCTGCACATGTTGCAAATCTGTTGTCGAATGAGCCTGCT 915
Query 374 GACATTAAATTAGGTGTTGGAGGGTTCAGCATGGGTGCAGCGACATCTCTGTATTCTGCA 433
||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||
Sbjct 916 GACATTAAATTAGGTGTTGGAGGATTCAGCATGGGTGCGGCGACATCTCTATATTCTGCA 975
Query 434 ACTTGTTTTGCTCTCGGTAAATATGGAAATGGCAATCCGTACCCTATCAATTTAAGCACA 493
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 976 ACTTGTTTTGCTCTCGGTAAATATGGAAATGGCAATCCATACCCTATCAATTTAAGCGCA 1035
Query 494 ATCATAGGCTTAAGCGGTTGGCTTCCTTGTGCAAAGACATTGGCTGGCAAACTAGAAGAG 553
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1036 ATCATAGGCTTAAGCGGCTGGCTTCCTTGTGCAAAGACATTGGCTGGCAAACTAGAAGAG 1095
Query 554 GAACAGATCAAGAACCGAGCTGCATCATTGCCCATTATAGTCTGTCATGGAAAAGCTGAT 613
|||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||
Sbjct 1096 GAACAGATCAAGAACCGAGCTGCATCGTTGCCCATTGTTGTCTGTCATGGAAAAGCTGAT 1155
Query 614 GATGTGGTACCGTTCAAGTTTGGGGAGAAATCTTCCCAAGCCTTGCTTTCAAATGGGTTT 673
||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||
Sbjct 1156 GATGTGGTACCGTTCAAGTTTGGGGAGAAATCTTCACAGGCTTTGCTTTCAAATGGGTTT 1215
Query 674 AAGAAGGTGACCTTTAAACCTTACAGTGCACTTGGTCACTACACAATCCCACAGGAGATG 733
|||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1216 AAGAAGGTGACCTTCAAACCTTACAGTGCACTTGGTCACCACACAATCCCACAGGAGTTG 1275
Query 734 GATGAGTTGTGCGCGTGGTTGACATCCACCCTCGGCCTCGAAGGTTGATGCTT 786
|||||||||||||| |||||||||||||| ||| ||||||||||||||| |||
Sbjct 1276 GATGAGTTGTGCGCATGGTTGACATCCACGCTCAGCCTCGAAGGTTGATACTT 1328
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38981698072
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5