BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941561
Length=1033
Score E
Sequences producing significant alignments: (Bits) Value
AT5G20080.1 | Symbols: | FAD/NAD(P)-binding oxidoreductase | c... 1729 0.0
> AT5G20080.1 | Symbols: | FAD/NAD(P)-binding oxidoreductase |
chr5:6782566-6786664 FORWARD LENGTH=1433
Length=1433
Score = 1729 bits (936), Expect = 0.0
Identities = 993/1021 (97%), Gaps = 1/1021 (0%)
Strand=Plus/Plus
Query 1 TTCTTTCTCCGAGATCTAAAACCATCATGGCCACTTCCTTCTTCCGGCGACTCGCTAGGT 60
||||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 118 TTCTTTCTCAGAGATCT-AAACCATCATGGCTACTTCCTTCTTCCGGCGACTCGCTAGGT 176
Query 61 CAGCTCCGATTACATTCCCTGTCGCATTTGGATCTCAAAGCAAATCTGGTTCTGGCGCTT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 CAGCTCCGATTACATTCCCTGTCGCATTTGGATCTCAAAGCAAATCTGGTTCTGGCGCTT 236
Query 121 TCCGATTCTCTACCGGTGCAATCGCGGCACTTTCCGGCGGGTTCTCCTATTACTACTTAA 180
|||| ||||| |||||||||||||||||||||||||| || ||||||||||||||||| |
Sbjct 237 TCCGGTTCTCCACCGGTGCAATCGCGGCACTTTCCGGTGGATTCTCCTATTACTACTTGA 296
Query 181 CATCCGGCACCAATCTGGTTTATCTGGATCAAGCTAAGGAAGAGACAGGACCCAAAACCG 240
||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 297 CATCCGGCAACAATCTGGTTTATCTGGATCAAGCTAAGGAAGAGACAGGACCAAAAACCG 356
Query 241 CTCTAAACCCTGATAAATGGCTCGAGTTCAAGCTTCAAGACACTGCTAGAGTTAGCCACA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 CTCTAAACCCTGATAAATGGCTCGAGTTCAAGCTTCAAGACACTGCTAGAGTTAGCCACA 416
Query 301 ACACTCAGTTGTTCAGGTTCTCATTTGACCCCTCAGCTGAATTGGGTCTACATGTTGCTT 360
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 417 ACACTCAGTTGTTCAGGTTCTCATTTGACCCCTCAGCTGAGTTGGGTCTACATGTTGCTT 476
Query 361 CTTGTCTCCTGACAAGGGCTCCTTTAGGCTATAATGCTGAAGGGAAAACGAAATATGTCA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 CTTGTCTCCTGACAAGGGCTCCTTTAGGCTATAATGCTGAAGGGAAAACGAAATATGTCA 536
Query 421 TTAGACCTTACACTCCTATATCAGACCCAAAGGCTAAGGGCTATTTTGATTTACTGATTA 480
||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 537 TTAGACCTTACACTCCTATATCAGATCCAGAGGCTAAGGGCTATTTTGATTTACTGATTA 596
Query 481 AGGTATATCCAGACGGAAAAATGAGTCAGCATTTTGCCAGCTTAAAACCGGGGGATGTGT 540
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 AGGTATATCCTGACGGAAAAATGAGTCAGCATTTTGCCAGCTTAAAACCGGGGGATGTGT 656
Query 541 TGGAAGTAAAAGGACCCGTTGAAAAGTTCAAATATTCGCCGAATATGAAGAAACATATTG 600
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 657 TGGAAGTAAAAGGACCCGTTGAAAAGTTCAAATACTCGCCGAATATGAAGAAACATATTG 716
Query 601 GCATGATTGCCGGTGGAAGTGGGATTACTCCAATGCTTCAGGTGATTGATGCCATTGTGA 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 GCATGATTGCCGGTGGAAGTGGGATTACTCCAATGCTTCAGGTGATTGATGCCATTGTGA 776
Query 661 AGAATCCCGAGGACAACACGCAGATATCATTGCTTTATGCCAATGTTTCTCCAGATGATA 720
||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 777 AGAATCCTGAGGACAACACGCAGATATCATTGCTTTATGCCAATGTGTCACCAGATGATA 836
Query 721 TACTTCTGAAGCAGAAGCTTGATGTTCTTCAGGCTAACCACCCAAATTTGAAGATATTCT 780
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 837 TACTCCTGAAGCAGAAGCTTGATGTACTTCAGGCTAACCACCCAAATTTGAAGATATTCT 896
Query 781 ATACTGTTGACAATCCTACTAAAAACTGGAAAGGAGGAGTAGGTTACATTTCAAAGGATA 840
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 ATACTGTTGACAACCCTACTAAAAACTGGAAAGGAGGAGTAGGTTACATTTCAAAGGATA 956
Query 841 TGGCTCTGAAAGGCTTACCTCTTCCTACGGATGATACTCTTATCCTTGTATGTGGTCCTC 900
|||||||||||||||||||||||||||| || |||||||||||||||||||| |||||||
Sbjct 957 TGGCTCTGAAAGGCTTACCTCTTCCTACCGACGATACTCTTATCCTTGTATGCGGTCCTC 1016
Query 901 CTGGGATGATGGAGCATATATCTGGAGGCAAAGCTCCAGACTGGTCACAAGGAGAGGTCA 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 CTGGGATGATGGAGCATATATCTGGAGGCAAAGCTCCAGACTGGTCACAAGGAGAGGTCA 1076
Query 961 AGGGGATACTCAAGGAACTCGGATACACAGAGCAAATGGTGTTCAAATTCTGAGAGTACT 1020
||||||| |||||||||||||||||||||||| ||||||||||||||||||||| | |||
Sbjct 1077 AGGGGATTCTCAAGGAACTCGGATACACAGAGGAAATGGTGTTCAAATTCTGAGTGGACT 1136
Query 1021 A 1021
|
Sbjct 1137 A 1137
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50636020176
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5