BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941565
Length=609
Score E
Sequences producing significant alignments: (Bits) Value
AT5G20120.1 | Symbols: | unknown protein; Has 54 Blast hits to... 1013 0.0
> AT5G20120.1 | Symbols: | unknown protein; Has 54 Blast hits
to 54 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa
- 18; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes
- 18 (source: NCBI BLink). | chr5:6795366-6797172 FORWARD
LENGTH=1195
Length=1195
Score = 1013 bits (548), Expect = 0.0
Identities = 587/606 (97%), Gaps = 2/606 (0%)
Strand=Plus/Plus
Query 5 TTTTAGCTTCTAGGAACATGTCTGGTGGAACTCCAGTTGGTGGTGGTGGGTACATTAGGC 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TTTTAGCTTCTAGGAACATGTCTGGTGGAACTCCAGTTGGTGGTGGTGGGTACATTAGGC 420
Query 65 AAAGACATAGCCAAGGTTATGCATCTGGTGGTGATGATCTTGAGGATGATGCTTGCTCTA 124
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 421 AAAGACATAGCCAAGGTTATGCTTCTGGTGGTGATGATCTTGAGGATGATGCTTGCTCTA 480
Query 125 GGCCACAGCCTTTTTCGTTAGAGAATCCTAGAAGTAAAACGTGGGTTGAGATTTTGGAGA 184
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 481 GGCCACAGCCTTTTTCTTTAGAGAATCCTAGAAGTAAAACCTGGGTTGAGATTTTGGAGA 540
Query 185 ATGTGCTTTGGATTGCATCTGCTGTGTTCATTGTCTATTTTGGAGACAGACATTCCAATA 244
||||||||||||||||||||||||| ||||||||||||||||||||||| || || ||||
Sbjct 541 ATGTGCTTTGGATTGCATCTGCTGTCTTCATTGTCTATTTTGGAGACAGGCACTCTAATA 600
Query 245 TGATACATATCCTCTTACACGATGCTCGGATCAAAAGGATGCCTTTGTATTTCGGGATGT 304
|||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TGATACATATTCTCTTACGTGATGCTCGGATCAAAAGGATGCCTTTGTATTTCGGGATGT 660
Query 305 TGGGAATAGCTGTGAACATTATAATCATAATCTACGAAAGCATGTTATCGTGGAGCATGA 364
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 661 TGGGAATAGCTGTGAACATTATAATCATAATCTACGAAAGCATGTTATCTTGGAGCATGA 720
Query 365 GAAGGTTTGATGAGAAATGGGAACTGTGGAGTATCTCAGCTCTGCCTTTCATCACCCTGC 424
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 721 GAAGGTTTGATGAGAAATGGGAACTGTGGAGTATCTCTGCTCTGCCTTTCATCACCCTAC 780
Query 425 TCGGCCTCATTTCATTTGGCCTGCTCTCCTTTGCTCTGTGGCCTATATGGGGCTTCTTGA 484
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 TCGGCATCATTTCATTTGGCCTGCTCTCCTTTGCTCTGTGGCCTATATGGGGCTTCTTGA 840
Query 485 CTCTCCCCCTTCTGTTCACATTGTTCATGGCTTGCCTTGTTGTGTTCCCGCATCTCATGA 544
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 841 CTCTCCCCCTTCTGTTCACATTGTTCATGGCATGCCTTGTTGTGTTCCCACATCTCATGA 900
Query 545 TCATCAAATTCAGGCCTCAAAACGACGAACTCCGCATAGATTGATATGTAGAGAACTG-A 603
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |
Sbjct 901 TCATCAAATTCAGGCCTCAAAACGACGAACTCCGCATAGATTGATCTGTAGAGAA-TGGA 959
Query 604 GATAGT 609
||||||
Sbjct 960 GATAGT 965
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29336741848
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5