BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941568
Length=814
Score E
Sequences producing significant alignments: (Bits) Value
AT5G20150.1 | Symbols: ATSPX1, SPX1 | SPX domain gene 1 | chr5... 1147 0.0
> AT5G20150.1 | Symbols: ATSPX1, SPX1 | SPX domain gene 1 | chr5:6802372-6803625
FORWARD LENGTH=1086
Length=1086
Score = 1147 bits (621), Expect = 0.0
Identities = 731/784 (93%), Gaps = 7/784 (1%)
Strand=Plus/Plus
Query 21 ATGAAGTTTGGTAAGAGTCTGAGCAATCAGATCGAGCAGACACTTCCTGAATGGCAAGAC 80
|||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||
Sbjct 58 ATGAAGTTTGGTAAGAGTCTCAGCAATCAGATCGAGCAAACTCTTCCTGAATGGCAAGAC 117
Query 81 AAGTTCTTGTCTTACAAAGAGCTCAAGAAACGACTCAAACTCATCCCTTCCAAAACCGGT 140
|||||||||||||||||||| ||||| |||||||||||||||||| |||||||||||
Sbjct 118 AAGTTCTTGTCTTACAAAGAACTCAAAAAACGACTCAAACTCATCGGTTCCAAAACCGCC 177
Query 141 GATCGTCCCGCTAAACGTCTCCGTTTTGATGATGAGTTTTCCGTCGGAATGTCCAAAGAA 200
|||||||||| |||||| ||||| ||| | |||||||||||||||||||| || ||||||
Sbjct 178 GATCGTCCCGTTAAACGACTCCG-TTT-A-GATGAGTTTTCCGTCGGAATATCGAAAGAA 234
Query 201 GAGATCAATTTCATCCAATTGCTT-GAAGACGAGTTGGAGAAATTCAACAATTTCTTCGT 259
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 235 GAGATCAATTTCATCCAATTG-TTAGAAGACGAGTTGGAGAAATTCAACAATTTCTTCGT 293
Query 260 TGAGAAAGAGGAAGAATATATCATCAGATTAAAGGAATTTCGAGATAGAATTGCGAAAGC 319
|||||| || |||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 294 TGAGAAGGAAGAAGAATATATCATCAGACTAAAGGAATTTAGAGATAGAATTGCGAAAGC 353
Query 320 TAAGGATTCAATGGAGAAGATGATGACAATCAGGAAGGAGATTGTTGATTTCCATGGAGA 379
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 354 TAAGGATTCAATGGAGAAGATGATAAAAATCAGGAAGGAGATTGTTGATTTCCATGGAGA 413
Query 380 GATGGTTCTTCTTGAGAATTACAGTGCTCTTAATTATACTGGATTGGTTAAGATACTGAA 439
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 414 AATGGTTCTTCTTGAGAATTACAGTGCTCTTAATTACACTGGATTGGTTAAGATACTGAA 473
Query 440 GAAGTATGACAAGAGAACTGGTGATCTCATGCGTTTACCCTTT-ATCCAGAAAGTTCTTC 498
|||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 474 GAAGTATGACAAAAGAACTGGTGATCTCATGCGTTTACC-TTTCATCCAGAAAGTTCTTC 532
Query 499 AACAACCCTTTTACACTACAGACTTATTGTTCAAGCTCGTCAAGGAATCTGAGGCAATGC 558
| ||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 533 AGCAACCTTTTTACACTACTGACTTATTGTTCAAGCTTGTCAAGGAATCTGAGGCAATGC 592
Query 559 TTGATCAGTTCTTCCCTGCTAACGAACCGGAGTCTGAGATTATCCAAGCAGAGCTCTCAG 618
|||||||| ||||||||||||||||| | |||||||||||||||||||||||| | ||||
Sbjct 593 TTGATCAGATCTTCCCTGCTAACGAAACTGAGTCTGAGATTATCCAAGCAGAGTTATCAG 652
Query 619 AGCACAAGTTCATGGAGAGCCTCCATATGAAGAGTACAATCGCTGCTTTGCGGGTTTTGA 678
|||| |||||||||||||| || ||||||||||| ||||||||||| |||||||||||||
Sbjct 653 AGCATAAGTTCATGGAGAGTCTTCATATGAAGAGCACAATCGCTGCCTTGCGGGTTTTGA 712
Query 679 AGGAGATCAGGAGCGGAAGTTCTACTGTAAGCGTGTTTTCATTGCCGCCTCTCCAATTAA 738
||||||||||||| |||||||||||||| || |||||||||||||||||||| || ||||
Sbjct 713 AGGAGATCAGGAGTGGAAGTTCTACTGTTAGTGTGTTTTCATTGCCGCCTCTACAGTTAA 772
Query 739 ACGGGTTAGATGAGACTTGGAAGAAGATTCCGTTGTTGGAGCAAGAAGCCAAATAGAGAG 798
| || ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 773 ATGGCTTAGATGAGACATGGAAGAAGATTCCATTGTTGGAGCAAGAAGCCAAATAGAGAG 832
Query 799 GGAG 802
|||
Sbjct 833 TGAG 836
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39634741983
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5