BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941574
Length=1261
Score E
Sequences producing significant alignments: (Bits) Value
AT5G20220.1 | Symbols: | zinc knuckle (CCHC-type) family prote... 1814 0.0
AT5G20225.1 | Symbols: | other RNA | chr5:6825261-6825940 REVE... 422 5e-117
> AT5G20220.1 | Symbols: | zinc knuckle (CCHC-type) family protein
| chr5:6821990-6825981 FORWARD LENGTH=1522
Length=1522
Score = 1814 bits (982), Expect = 0.0
Identities = 1148/1226 (94%), Gaps = 19/1226 (2%)
Strand=Plus/Plus
Query 53 GGTTTTGCAG---CCAGAATGGTTGAGAAAGAAGAACACCCGATTTCAGTTTCTTCTCAA 109
|||||||||| ||| ||||| ||||||||||||| |||||||||||||| ||||||||
Sbjct 109 GGTTTTGCAGCCACCACAATGGATGAGAAAGAAGAAGACCCGATTTCAGTTCCTTCTCAA 168
Query 110 TCCCAACTCAAAATTCGCCTTTTTCCCTCGCGCGA-----------T-TTCTTCTTCTTC 157
||||||||||||||||| |||||| |||||||||| | ||||||||||||
Sbjct 169 TCCCAACTCAAAATTCGTCTTTTTTCCTCGCGCGATTTCTTCTTCTTCTTCTTCTTCTTC 228
Query 158 AGACAACAAGGACGATGGTTCAGTTTCATCTTCCAGACAAAACAACCGACAGATTGGTTA 217
|||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 229 CGACAACAACAACGATGGTTCAGTTTCATCTTCCAGACAAAACAACCGACAGATGGGTTA 288
Query 218 TGATCCCTCAGAGGAACTCTTTGGTGTTGATTTCAAGCCCAGGATCATATCTGGTGATTC 277
|||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 289 TGATCCTTCAGAGGAACTCTTTGGTGTTGATTTCAAGCCCAGGTTCATATCTGGTGATTC 348
Query 278 GCGTGAACCAAGGTCATGGTTTGGTCCTAACGGTCAGTACATTCGAGAGCTTCCATGTCC 337
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 349 GCGTGAACCAAGGTCATGGTTTGGTCCTAACGGTCAGTACATTCGAGAGCTTCCTTGTCC 408
Query 338 AACTTGTAGAGGAAGAGGTTATACTTCATGCTCAAATTGCGGAATCGAGAGGTCGCGATT 397
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 409 AACTTGTAGGGGAAGAGGTTATACTTCATGTTCAAATTGCGGAATCGAGAGGTCGCGATT 468
Query 398 GGACTGCCCTCAATGCAAAGGAAAGGGCATAATGACTTGTCTCAGATGTTTGGGGGATTG 457
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 469 AGACTGCCCTCAATGCAAAGGAAAGGGCATAATGACTTGTCTCAGATGTTTGGGGGATTG 528
Query 458 TGTCATCTGGGAAGAATCAATCGATGAACGACCTTGGGAGAAAGCTAGATCCAGTTCTCC 517
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 529 TGTCATATGGGAAGAATCAATCGATGAACGACCTTGGGAGAAAGCTAGATCCAGTTCTCC 588
Query 518 ATTTAGAGTAAAGGAGGATGATGAGGTTGATAATTTAGAGATTAAGTTCAGTAAAAGGAG 577
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 589 ATTTAGAGTAAAGGAGGATGATGAGGTTGATAATTTAGAGATAAAGTTCAGTAAAAGGCG 648
Query 578 GAAATCGAAGCGGATTTACCAGTCACCGACTCCTGAAGTTGGACAAAAGATCAGCCAATC 637
||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |||
Sbjct 649 AAAATCGAAGCGGATTTATCAGTCACCAACTCCTGAAGTTGGACAAAAGATCAGCCGATC 708
Query 638 TCTAAAAAGTCTCAATGCCAAAACTGGACTTTTTAGTAAACGAATGAAGATTATACATCG 697
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 709 TCTAAAAAGTCTCAATGCCAAAACTGGACTTTTTAGTAAGCGCATGAAGATTATACATCG 768
Query 698 TGATCCTGTGCTTCATGCTCAAAGGGTAGCTGCAATTAAGAAAGCTAAAGGAACACCAGC 757
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 769 TGATCCAGTGCTTCATGCTCAAAGAGTAGCTGCAATTAAGAAAGCTAAAGGAACACCAGC 828
Query 758 TGCTAGAAAGCATGCATCCGAATCTATGAAAGCTTTCTTCAGTAACCCTGAAAACCGTGA 817
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 829 TGCTAGAAAGCATGCATCCGAATCTATGAAAGCTTTCTTCAGTAACCCTGTAAACCGTGA 888
Query 818 ACAGAGAAGCCTATCCATGAAAGGGGTTAAATTTTACTGCAAGAACTGTGGACAGGAAGG 877
||||||||||||||| |||||||| ||| |||||||||||||||||||||||||||||
Sbjct 889 ACAGAGAAGCCTATCTATGAAAGGAACTAAGTTTTACTGCAAGAACTGTGGACAGGAAGG 948
Query 878 CCATAGACGCCATTACTGTCCAGAACTAAGCACTAATGCGGACAGAAGATTTAGATGTCG 937
|||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 949 CCATAGACGCCATTACTGTCCAGAACTAGGCACTAATGCGGACAGAAAATTTAGATGTCG 1008
Query 938 GGGTTGCGGTGGGAAAGGCCATAACCGAAGAACTTGTCCTAAGTCAAAATCAATGGTCAC 997
||||||||| ||||||||||| ||||| ||||||||||||||||| |||||||| |||||
Sbjct 1009 GGGTTGCGGCGGGAAAGGCCACAACCGTAGAACTTGTCCTAAGTCGAAATCAATAGTCAC 1068
Query 998 GAAAGGCATTTCCACTAGGTATCACCAATGTGGAATATGCGGTGAAAGCGGTCACAACAG 1057
|||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||
Sbjct 1069 TAAAGGCATTTCCACTAGGTATCACAAATGTGGAATATGCGGTGAGAGAGGTCACAACAG 1128
Query 1058 CAGAACATGCCTGAAGCCGACCGGAGTGAAACCTAGTGGCCCTGGTGGGGATTCCAGTGG 1117
||||||||||| |||||||||||||||||| |||||| || ||||| ||||| | ||
Sbjct 1129 CAGAACATGCCGGAAGCCGACCGGAGTGAATCCTAGTTGCAGTGGTGAAAATTCCGG-GG 1187
Query 1118 A-GATGGTGGTGGTAGAAGAAGGTATGCTTGTCGGTTCTGCAAGAAAATGGGACATAATG 1176
| ||||||| ||||| || || |||||||||| |||||||||||||||||||||||||||
Sbjct 1188 AAGATGGTGTTGGTAAAATAACGTATGCTTGTGGGTTCTGCAAGAAAATGGGACATAATG 1247
Query 1177 TAAGAACCTGTCCAAGTAAACAAGTTTCAGACAGTGATTCTTGTCTAGAGCAAGAAGGTT 1236
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1248 TAAGAACCTGTCCAAGTAAACAAGTTTCAGACAGTGATTCTTGTTTAGAGCAAGAAGGTT 1307
Query 1237 CTTGACAC-TGTTTATTTGGTTAGGC 1261
||||| || |||||||||||||||||
Sbjct 1308 CTTGA-ACCTGTTTATTTGGTTAGGC 1332
> AT5G20225.1 | Symbols: | other RNA | chr5:6825261-6825940 REVERSE
LENGTH=590
Length=590
Score = 422 bits (228), Expect = 5e-117
Identities = 285/313 (91%), Gaps = 2/313 (1%)
Strand=Plus/Minus
Query 845 TAAATTTTACTGCAAGAACTGTGGACAGGAAGGCCATAGACGCCATTACTGTCCAGAACT 904
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 TAAGTTTTACTGCAAGAACTGTGGACAGGAAGGCCATAGACGCCATTACTGTCCAGAACT 417
Query 905 AAGCACTAATGCGGACAGAAGATTTAGATGTCGGGGTTGCGGTGGGAAAGGCCATAACCG 964
| |||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||
Sbjct 416 AGGCACTAATGCGGACAGAAAATTTAGATGTCGGGGTTGCGGCGGGAAAGGCCACAACCG 357
Query 965 AAGAACTTGTCCTAAGTCAAAATCAATGGTCACGAAAGGCATTTCCACTAGGTATCACCA 1024
||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||| |
Sbjct 356 TAGAACTTGTCCTAAGTCGAAATCAATAGTCACTAAAGGCATTTCCACTAGGTATCACAA 297
Query 1025 ATGTGGAATATGCGGTGAAAGCGGTCACAACAGCAGAACATGCCTGAAGCCGACCGGAGT 1084
|||||||||||||||||| || |||||||||||||||||||||| |||||||||||||||
Sbjct 296 ATGTGGAATATGCGGTGAGAGAGGTCACAACAGCAGAACATGCCGGAAGCCGACCGGAGT 237
Query 1085 GAAACCTAGTGGCCCTGGTGGGGATTCCAGTGGA-GATGGTGGTGGTAGAAGAAGGTATG 1143
||| |||||| || ||||| ||||| | ||| ||||||| ||||| || || |||||
Sbjct 236 GAATCCTAGTTGCAGTGGTGAAAATTCCGG-GGAAGATGGTGTTGGTAAAATAACGTATG 178
Query 1144 CTTGTCGGTTCTG 1156
||||| |||||||
Sbjct 177 CTTGTGGGTTCTG 165
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61997673075
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5