BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941577
Length=2280
Score E
Sequences producing significant alignments: (Bits) Value
AT5G20250.4 | Symbols: DIN10 | Raffinose synthase family protei... 3421 0.0
> AT5G20250.4 | Symbols: DIN10 | Raffinose synthase family protein
| chr5:6833659-6836782 FORWARD LENGTH=2753
Length=2753
Score = 3421 bits (1852), Expect = 0.0
Identities = 2156/2301 (94%), Gaps = 27/2301 (1%)
Strand=Plus/Plus
Query 1 GAGAAAAC---GAAGAAGAAGATATGACGATTAAACCGGCGGTTCGTATTTCCGACGGGA 57
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 334 GAGAAAACGAAGAAGAAGAAGATATGACGATTAAACCGGCGGTTCGTATTTCCGACGGGA 393
Query 58 ATCTAATCATCAAGAACCGGACGATTTTAACCGGTTTACCAGATAATGTCATCACGACGT 117
||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 394 ATCTAATCATCAAAAACCGGACGATTCTAACCGGTGTACCAGATAATGTCATCACGACGT 453
Query 118 CTGCATCGGAGGCTGGACCGGTCGAAGGAGTCTTCGTCGGAGCTGTATTCGACAAGGAAG 177
| |||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 454 CAGCATCGGAAGCTGGACCGGTAGAAGGAGTCTTCGTCGGAGCTGTATTTAACAAGGAAG 513
Query 178 AGAGTAAACACGTCGTACCGATCGGTACGCTTCGTAATTCCCGGTTTATGTCTTGTTTTC 237
||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 514 AGAGTAAACACATCGTACCGATCGGTACGCTTCGCAATTCCCGGTTTATGTCTTGTTTCC 573
Query 238 GGTTTAAGCTTTGGTGGATGGCCCAGAGAATGGGCGAGATGGGCCGGGATATTCCATACG 297
|||||||||| ||||||||||||||||||||||| || |||||||| |||||||| ||||
Sbjct 574 GGTTTAAGCTCTGGTGGATGGCCCAGAGAATGGGAGAAATGGGCCGAGATATTCCCTACG 633
Query 298 AGACGCAGTTCTTATTGGTCGAGAGCAACGATGGGTCCCACCTTGA-----AC----CT- 347
|||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 634 AGACGCAGTTCTTATTGGTCGAGAGCAACGATGGGTCCCACCTTGAGTCTGACGGAGCTA 693
Query 348 --GACG--GAG-CTAACCAGAAAGTTTACACCGTCTTCTTGCCGTTAATCGAAGGATCTT 402
| || ||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 694 ACGGCGTCGAGTGTAACCAGAAAGTTTACACCGTTTTCTTGCCGTTAATCGAAGGATCTT 753
Query 403 TCCGTTCGTGTCTCCAAGGAAACGTTAACGATGAGGTTGAGCTCTGTTTGGAGAGTGGTG 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 754 TCCGTTCGTGTCTCCAAGGAAACGTTAACGATGAGGTTGAGCTCTGTTTGGAGAGTGGTG 813
Query 463 ACGTCGACACTAAACGGTCGTCGTTTACTCACTCTCTTTATATTCACGCCGGTACAGATC 522
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 814 ACGTGGACACTAAACGGTCGTCGTTTACTCACTCTCTGTATATTCACGCCGGTACAGATC 873
Query 523 CGTTTCAGACGATAACGGAAGCTATTCGTACCGTTAAGTTGCATCTGAATAGTTTCCGTC 582
|||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 874 CGTTTCAGACAATAACGGACGCTATTCGCACCGTTAAGTTGCATCTGAATAGTTTCCGTC 933
Query 583 AGCGTCACGAAAAGAAACTTCCAGGGATCGTTGACTACTTCGGGTGGTGCACTTGGGACG 642
| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 934 AACGTCACGAAAAGAAGCTTCCAGGGATCGTTGACTACTTCGGATGGTGCACTTGGGACG 993
Query 643 CGTTTTATCAAGAAGTGACCCAAGAAGGCGTCGAAGATGGTCTTGAGTCTCTCTCCGCCG 702
||||||||||||||||||| || ||||||||||||| ||||||| |||||||| ||||||
Sbjct 994 CGTTTTATCAAGAAGTGACTCAGGAAGGCGTCGAAGCTGGTCTTAAGTCTCTCGCCGCCG 1053
Query 703 GTGGTACGCCGCCGAAGTTTGTCATTATCGACGACGGTTGGCAATCCGTTGAGAGGGATG 762
|||||||||||||||||||||| || || ||||||||||||||||| |||||||| ||||
Sbjct 1054 GTGGTACGCCGCCGAAGTTTGTTATCATAGACGACGGTTGGCAATCAGTTGAGAGAGATG 1113
Query 763 ACACGGTGGAGACCGGAGATGAGAAGAAAGAG-CAGGCGGTTTCTCGATTGACCGGGATT 821
|||||||||| |||||||||||||||||||| || || ||| |||| |||| |||||
Sbjct 1114 CCACGGTGGAGGCCGGAGATGAGAAGAAAGAGTCA-CCGATTTTTCGACTGACGGGGATC 1172
Query 822 AAGGAGAATGAAAAGTTTAAGAAGAAGGATGATCCAAACGTTGGGATTAAGAACATTGTC 881
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1173 AAGGAGAACGAAAAGTTTAAGAAGAAGGATGATCCAAACGTTGGGATTAAGAACATTGTC 1232
Query 882 AAGATTGCCAAGGAGAAACACGGTTTGAAATACGTTTACGTGTGGCACGCGATAACGGGT 941
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1233 AAGATTGCTAAGGAGAAACACGGTTTGAAATATGTTTACGTGTGGCACGCGATAACGGGT 1292
Query 942 TATTGGGGCGGAGTTAGACCCGGGGGAGAATACGGATCTGTGATGAAGTATCCTAATATG 1001
||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||
Sbjct 1293 TATTGGGGCGGAGTTAGACCCGGGGAAGAATACGGATCTGTTATGAAATATCCTAATATG 1352
Query 1002 TCAAAGGGTGTGGTGGAGAACGATCCAACGTGGAAGACGGATATAATGGCGCTGCAAGGG 1061
|||||||||||||||||||| ||||| ||||||||||| ||| ||||| |||||||||||
Sbjct 1353 TCAAAGGGTGTGGTGGAGAATGATCCGACGTGGAAGACTGATGTAATGACGCTGCAAGGG 1412
Query 1062 TTGGGTTTGGTTAGTCCCAAGAAAGTGTATAAGTTCTACAATGAGCTTCATAGTTACTTG 1121
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1413 TTGGGTTTGGTTAGCCCCAAGAAAGTGTATAAGTTTTACAATGAGCTTCATAGTTACTTG 1472
Query 1122 GCTGATGCTGGTGTGGACGGTGTGAAAGTGGATGTGCAGTGTATATTGGAGACTTTGGGT 1181
||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1473 GCTGATGCTGGCGTGGACGGTGTGAAAGTGGATGTGCAGTGTGTATTGGAGACTTTGGGT 1532
Query 1182 GGTGGTTTAGGCGGTCGGGTTGAGTTAACTCGTCAGTTTCATCAAGCTCTTGACTCCTCT 1241
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 1533 GGTGGTTTAGGCGGTCGGGTTGAGCTGACTCGTCAGTTTCATCAAGCTCTTGACTCCTCT 1592
Query 1242 GTTGCAAAAAACTTCCCTGACAATGGCTGCATTGCTTGTATGAGCCACAATACGGATGCT 1301
||||| || |||||||| || |||||||||||||||||||||||||| ||||||||||||
Sbjct 1593 GTTGCTAAGAACTTCCCGGATAATGGCTGCATTGCTTGTATGAGCCATAATACGGATGCT 1652
Query 1302 CTCTACTGCTCGAAGCAAGCAGCTGTGATTAGAGCATCAGATGATTTCTACCCACGCGAT 1361
|| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1653 CTTTACTGCTCGAAGCAAGCAGCTGTGATTAGAGCATCAGATGATTTCTATCCACGGGAT 1712
Query 1362 CCGGTGTCTCACACCATCCATATAGCTTCGGTTGCATACAACAGTGTGTTCTTGGGAGAG 1421
||||||||||| |||||||||||||| || ||||| || |||||||||||||||||||||
Sbjct 1713 CCGGTGTCTCATACCATCCATATAGCCTCCGTTGCTTATAACAGTGTGTTCTTGGGAGAG 1772
Query 1422 TTTATGCAGCCTGACTGGGATATGTTCCATTCCGTGCACCCTGCAGCAGAGTACCATGCC 1481
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 1773 TTTATGCAGCCTGACTGGGATATGTTCCATTCCGTGCACCCTGCTGCAGAGTATCATGCC 1832
Query 1482 TCTGCGAGGGCCATCAGTGGTGGGCCTCTCTATGTCAGTGATGCTCCTGGAAAGCACAAC 1541
||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1833 TCTGCTAGGGCCATCAGTGGTGGGCCTCTCTATGTCAGTGATTCTCCTGGAAAGCACAAC 1892
Query 1542 TTTGAGCTTCTAAGAAAGCTTGTATTGCCTGATGGATCGATTCTTCGTGCTCGATTGCCT 1601
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 1893 TTTGAGCTTCTAAGAAAGCTTGTATTGCCTGATGGATCGATTCTTCGTGCTCGACTCCCT 1952
Query 1602 GGTAGACCGACTCGCGATTGTTTGTTCGCAGATCCTGCCCGTGATGGTGTCAGCTTGCTA 1661
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1953 GGTAGACCAACTCGCGATTGTTTGTTCGCTGATCCTGCCCGTGATGGTGTCAGCTTGCTA 2012
Query 1662 AAGATATGGAACATGAACAAGTACACTGGAGTTCTTGGCGTGTATAACTGCCAAGGAGCA 1721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2013 AAGATATGGAACATGAACAAGTACACTGGAGTTCTTGGCGTGTATAACTGCCAAGGAGCA 2072
Query 1722 GCTTGGAGCAGCACAGAAAGAAAAAACATCTTCCACCAGACAAAAACTGATAGCCTCACT 1781
||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 2073 GCTTGGAGCAGCACAGAGAGAAAAAACATTTTCCACCAGACTAAAACTGATAGCCTCACT 2132
Query 1782 GGCTCCATTCGTGGTCGTGATGTGCATTTAATATCCAAGGCCTCTACTGATCCA-CGGAC 1840
|||||||||||||||||||||||||||| |||||| ||||||| ||||||||| | ||
Sbjct 2133 GGCTCCATTCGTGGTCGTGATGTGCATTCAATATCGGAGGCCTCCACTGATCCAACA-AC 2191
Query 1841 CTGGAATGGAGACTGTGCTGTTTACTCCCAGAGCAGAGGCGAACTTATCATTATGCCATA 1900
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2192 CTGGAATGGAGACTGTGCTGTTTACTCCCAGAGCAGAGGCGAACTTATTGTTATGCCATA 2251
Query 1901 CAATGTGTCTCTTCCAATCTCACTCAAAATCTGTGAGCACGAGATCTTCACCGTGAGTCC 1960
|||||||||||||||| |||||||||||||| ||||||||||||||||||| ||||| ||
Sbjct 2252 CAATGTGTCTCTTCCAGTCTCACTCAAAATCCGTGAGCACGAGATCTTCACGGTGAGCCC 2311
Query 1961 CATTAAG-CATCTGGCTACTGATGGTATCTCATTTGCTCCGCTCGGTCTTGTAAACATGT 2019
||||| | ||||| | | ||||||| | || ||||| || | ||||| ||||||||||
Sbjct 2312 CATTA-GTCATCTTG-T--TGATGGTGTATCTTTTGCCCCAATTGGTCTAGTAAACATGT 2367
Query 2020 ACAATTCGGGAGGAGCTATCGAAGGACTTAAATATGAAGCCGAGAAGATGAAAGTGGTAA 2079
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2368 ACAATTCGGGAGGAGCTATCGAAGGACTTAGATATGAAGCCGAGAAGATGAAAGTGGTAA 2427
Query 2080 TGGAAGTTAAAGGGTGTGGCAAATTCGGATCTTACTCTTCTGTGAAGCCTAAGAGGTGCG 2139
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2428 TGGAAGTTAAAGGATGTGGCAAATTCGGATCTTACTCTTCTGTGAAGCCTAAGAGATGCG 2487
Query 2140 TCGTTGAGTCACATGAGATTGCATTCGAGTACGATTCCTCCTCTGGATTGGTCACCTTTG 2199
| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2488 TTGTTGAGTCAAATGAGATTGCATTCGAGTACGATTCCTCCTCTGGATTGGTCACCTTTG 2547
Query 2200 AGTTGGACAAAATGCCTGTAGAGACCAAAAGATTACATCTGATCGAAGTTGAGCTATGAA 2259
|||| |||||||||||| |||||| |||| |||| ||||||||| |||||||| ||||||
Sbjct 2548 AGTTAGACAAAATGCCTATAGAGAACAAACGATTTCATCTGATCCAAGTTGAGTTATGAA 2607
Query 2260 GAGTGATTCATACAATTCATT 2280
|||||||||||||||||||||
Sbjct 2608 GAGTGATTCATACAATTCATT 2628
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 113152028430
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5