BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941581
Length=777
Score E
Sequences producing significant alignments: (Bits) Value
AT5G20290.1 | Symbols: | Ribosomal protein S8e family protein ... 1146 0.0
> AT5G20290.1 | Symbols: | Ribosomal protein S8e family protein
| chr5:6851452-6853066 REVERSE LENGTH=966
Length=966
Score = 1146 bits (620), Expect = 0.0
Identities = 746/802 (93%), Gaps = 27/802 (3%)
Strand=Plus/Plus
Query 1 AGCTTAACTTTGTTGGAGAAACCCTAATCGGCGACAATGGGTATTTCTCGTGACTCCATC 60
|||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 19 AGCTAAACTTTATTGGAGAAACCCTAATCGGCGACAATGGGTATTTCTCGTGACTCTATC 78
Query 61 CACAAGAGGCGTGCCACTGGAGGCAAGCAGAAGCAATGGAGGAAGAAGCGAAAGTATGAG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 79 CACAAGAGGCGTGCCACTGGAGGCAAGCAGAAGCAATGGAGGAAGAAGCGAAAGTATGAG 138
Query 121 ATGGGAAGGCAGCCAGCCAACACCAAGCTCTCAAGCAACAAGACGGTCAGAAGAATCAGA 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 139 ATGGGAAGGCAGCCAGCCAACACCAAGCTCTCAAGCAACAAGACGGTCAGAAGAATAAGA 198
Query 181 GTTCGTGGTGGAAATGTTAAGTGGCGTGCGTTGAGGCTCGATACTGGTAACTACTCTTGG 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 199 GTTCGTGGTGGAAATGTTAAGTGGCGTGCGTTGAGGCTCGATACTGGTAACTACTCGTGG 258
Query 241 GGAAGTGAAGCTGTTACCCGCAAGACCAGAGTCCTTGATGTCGTCTACAATGCCTCCAAC 300
||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 259 GGAAGTGAAGCAACTACCCGCAAGACCAGAGTCCTTGATGTGGTCTACAATGCCTCCAAC 318
Query 301 AATGAGCTTGTCCGTACTAAGACACTTGTCAAGAGTGCTATTGTTCATGTTGATGCAGCT 360
||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 319 AATGAGCTTGTACGTACTAAGACACTTGTCAAGAGTGCTATTGTTCAGGTTGATGCTGCT 378
Query 361 CCTTTCAAGCAGTGGTATCTCTCGCACTATGGTGTTGAGGTTGGCCGCAAGAAGAAGAAT 420
|| |||||||||||||| ||||||||||||||||||||| |||| ||||||||||||| |
Sbjct 379 CCGTTCAAGCAGTGGTACCTCTCGCACTATGGTGTTGAGCTTGGGCGCAAGAAGAAGAGT 438
Query 421 GCTCCTTCCAACAAGAAGGACGCAGAGGAAGGTGAAGAGGTAGCAGCT--A--T--TGAG 474
||| |||||| ||||||||||| ||||||||||||||||| ||| | | | | ||||
Sbjct 439 GCTTCTTCCACCAAGAAGGACGGAGAGGAAGGTGAAGAGGCAGCTGTTGCAGCTCCTGAG 498
Query 475 GAGACCAAGAAGAGCAACCACCTCTCT-AGAAAGATTG-AGAGCCGTCAAGAGGGTCGCA 532
||| ||||||||||||||||||| || |||||||||| | |||||||||||||||||||
Sbjct 499 GAGGTCAAGAAGAGCAACCACCTC-CTGAGAAAGATTGCA-AGCCGTCAAGAGGGTCGCA 556
Query 533 GTCTTGATTCACACATTGAGGACCAATTCGCAAGTGGACGTTTGTTGGCTTGTATCTCTT 592
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 557 GTCTTGATTCACACATTGAGGACCAATTTGCAAGTGGACGTTTGTTGGCTTGTATCTCTT 616
Query 593 CAAGGCCTGGCCAGTGCGGACGTGCTGATGGATACATCTTGGAAGGTAAAGAGTTGGAGT 652
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 617 CAAGGCCTGGCCAGTGCGGGCGTGCTGATGGATACATCTTGGAAGGTAAAGAGTTGGAGT 676
Query 653 TCTACATGAAGAAGATCCAGAAGAAGAAGGGCAAGGGTGCCGCTTAGA-T-TCT-CTT-- 707
|||||||||||||||||||||||||||||||||||||||| ||||||| | ||| |||
Sbjct 677 TCTACATGAAGAAGATCCAGAAGAAGAAGGGCAAGGGTGCTGCTTAGAGTCTCTTCTTAT 736
Query 708 CT---T-G---T-----CTTACAACATGTTTTGAGTTTTCAGTTTCAGTTGTCTGAGAAA 755
|| | | | |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 737 CTGCCTTGAGCTTTTGTCTTACAACATGTTTTGAGTTTTCAGTTTCAATTGTCTGAGAAA 796
Query 756 CTATGTTTTTGGATTAGCTTGT 777
||||||||||||||||||||||
Sbjct 797 CTATGTTTTTGGATTAGCTTGT 818
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37776078544
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5