BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941585
Length=1733
Score E
Sequences producing significant alignments: (Bits) Value
AT3G48150.1 | Symbols: APC8, CDC23 | anaphase-promoting complex... 841 0.0
> AT3G48150.1 | Symbols: APC8, CDC23 | anaphase-promoting complex
subunit 8 | chr3:17779653-17782645 REVERSE LENGTH=1967
Length=1967
Score = 841 bits (455), Expect = 0.0
Identities = 508/533 (95%), Gaps = 5/533 (1%)
Strand=Plus/Plus
Query 855 AGGGAATTTGACCACGTTGAAATCATGGTTAG-AGAACATCTGAGAAACGATCCCTATCG 913
|||||||| ||||| ||||||||||| ||| | ||||| ||||||||||||||| |||||
Sbjct 933 AGGGAATTCGACCAGGTTGAAATCAT-GTTTGAAGAACTTCTGAGAAACGATCCATATCG 991
Query 914 GATGGAAGATATGGATTTGTATTCTTATGTTCTGTATGCAAAAGAAGCATGTGCTGCGCT 973
| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 992 GGTAGAAGATATGGATTTGTATTCTAATGTTCTGTATGCAAAAGAAGCATGTGCTGCGCT 1051
Query 974 GAGTTACCTTGCACATAAGGTGGTTTTGACTGATAAGTACAGACCTGAGTCTTGCTGCAT 1033
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1052 GAGTTACCTTGCACATAAGGTGTTTTTGACTGATAAGTACAGACCTGAGTCTTGCTGCAT 1111
Query 1034 CATTGGCAACTACTACAATTTAAAAGGCCAGCATGAGAAAACAGTTATGTACTTCCGGAG 1093
||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||||
Sbjct 1112 CATTGGCAACTACTACAGTTTAAAAGGCCAGCATGAGAAAGCAGTTATGTATTTCCGGAG 1171
Query 1094 AGCTTTAAAACTGAAC---AAGTATTTATCGGCGTGGACTCTTATGGGCCATGAATATGT 1150
|||||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1172 AGCTTTGAAACTGAACAAGAAGTATTTATCTGCGTGGACTCTTATGGGCCATGAATATGT 1231
Query 1151 TGAGATGAAGAACACGCATGCTGCCATTGATGCATATCGACGAGCTGTTGATATAAACCC 1210
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1232 TGAGATGAAGAACACGCCTGCTGCCATTGATGCATATCGACGAGCTGTTGATATAAACCC 1291
Query 1211 TTGTGATTATCGAGCTTGGTATGGGTTAGGACAAGCATGTGAGATGATGGGGATGCCTTT 1270
| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1292 TACTGATTATCGAGCTTGGTATGGGTTAGGACAAGCATATGAGATGATGGGGATGCCTTT 1351
Query 1271 CTATGCACTTTACTATTTTCGCAAATCCATATTCTTTCTTCCAAACGATTCTCGGTTGTG 1330
|||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1352 CTATGCACTTCACTATTTTCGCAAATCCATATTCTTTCTTCCAAATGATTCTCGGTTGTG 1411
Query 1331 GATAGCCATGGCTAAATGTTATCAAACCGAACAGCTTTACATGCTTGAAGAGG 1383
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1412 GATAGCCATGGCTAAATGTTATCAAACCGAACAGCTTTACATGCTTGAAGAGG 1464
Score = 318 bits (172), Expect = 1e-85
Identities = 188/196 (96%), Gaps = 0/196 (0%)
Strand=Plus/Plus
Query 1398 AAGCTTCACCAGAAGCTTGGACGTAATGAAGAAGCTGCATTTTATTTCGAGAAGGATTTA 1457
|||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 1533 AAGCTTCACCAGAAGCTTGGACGTAATGAAGAAGCTGCATATTACTTCGAGAAGGATTTA 1592
Query 1458 GAGAGAATGGATGCTGAAGGATTAGAAGGACCAAACAAGTTTGAGGCTTTAATTTTTCTT 1517
|||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||||
Sbjct 1593 GAGAGAATGGATGCTGAAGGATTAGAAGGACCGAACATGTTTGAGGCTTTGGTTTTTCTT 1652
Query 1518 GCCACACATTTTAAAACTCACAAGAAATTCGCAGAAGCAGAAGTGTATTGCACCCGTCTT 1577
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1653 GCCACACATTTTAAAAATCACAAGAAATTCGAAGAAGCAGAAGTGTATTGCACCCGTCTT 1712
Query 1578 CTCGATTATAGTGGAC 1593
||||||||||||||||
Sbjct 1713 CTCGATTATAGTGGAC 1728
Score = 244 bits (132), Expect = 2e-63
Identities = 151/160 (94%), Gaps = 1/160 (1%)
Strand=Plus/Plus
Query 698 GAGTGCATGGTCAGAGCTGCAGTCTCTGTGTACTTCGATTGAAATCTTGAATAGCCTTAA 757
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 716 GAGTGCCTGGTCAGAGCTGCAGTCTCTGTGTACTTCGATCGAAATCTTGAATAGCCTTAA 775
Query 758 TTTAAACAATCACTGGATGAAAGAGTGTTTTTCTTGGCAATGCGGATCAAGAACTCAGAA 817
||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 776 CTTAAACAATCACTGGATGAAAGAGT-TTTTTCTTGGCAATGCTTATCAAGAACTCAGAA 834
Query 818 TGCACATTGGGTCTTTGGCGAAGTACGAGTATTTGCAAGG 857
|||||| | ||||||||||||||||||||||||||||||
Sbjct 835 TGCACACCGAGTCTTTGGCGAAGTACGAGTATTTGCAAGG 874
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85692330315
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5