BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg941590

Length=554
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G20370.1 | Symbols:  | serine-rich protein-related | chr5:68...   693    0.0  


> AT5G20370.1 | Symbols:  | serine-rich protein-related | chr5:6886931-6887458 
REVERSE LENGTH=528
Length=528

 Score =  693 bits (375),  Expect = 0.0
 Identities = 484/532 (91%), Gaps = 26/532 (5%)
 Strand=Plus/Plus

Query  22   ATGGCGGCTACTGGAAGATCAAGCCGATCAGTTCTTCGTCCTCTTTCTTCTTCCCAGAGA  81
            ||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||
Sbjct  1    ATGGCGGCTACTGGAAGATCAAGCCGATCAGTTCTACGTCCTCTCTCTTCTTCACAGAGA  60

Query  82   TT--AC-ACAA-CA--ATCATCATCATCGTCAACGATCTCCGTCTCCTTGCAAC---AAT  132
            ||  || |||| ||  ||||||||||||||||||||||||||||||||||||||   |||
Sbjct  61   TTACACAACAATCATCATCATCATCATCGTCAACGATCTCCGTCTCCTTGCAACAAGAAT  120

Query  133  CTCAATCTCCGATTAAAGGTTTT-TTCTCCCGGAAACATCCCGACGAAACCCT-C--CGT  188
            |||||||||||||| || ||||| ||||||||||| ||| ||  ||||||| | |  |||
Sbjct  121  CTCAATCTCCGATTGAA-GTTTTATTCTCCCGGAAGCAT-CC--CGAAACCATCCGTCGT  176

Query  189  AACCGTTTCTTCTAATCATCAG---AAGAGAAAGTGTTTGTGCTCTCCTACGACGCACCC  245
            ||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||
Sbjct  177  AACCGTTTCTTCTAATCATCAGACCAAGAGAAAGTGTTTGTGCTCTCCTACGACGCACCC  236

Query  246  TGGTTCTTTCCGGTGCTCTTTTCACCGCCGGTTAGAACATGAGAAGTCCAAAACCCTAGC  305
            |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct  237  TGGTTCTTTCCGGTGCTCTTTTCACCGCCGATTAGAACATGAGAAATCCAAAACCCTAGC  296

Query  306  TTCTTCGACGGCCAAGCGTAACAATCGTGGTGATTATCCGATTA-----A-TGTTGGATT  359
            ||||||||||| |||||||||||||||||||||| || ||||||     | |||||||||
Sbjct  297  TTCTTCGACGGTCAAGCGTAACAATCGTGGTGATAATACGATTAGGGTTAATGTTGGATT  356

Query  360  GAATCTGAGGAAATTGGCGTTGATGAATTCGCTAGCGAAGATTGGTAGTGTTGAGGCGGA  419
            ||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct  357  GAATCTGAGGAAATTGGCGTTGATGAATTCGTTAGCGAAGATCGGTAGTGTTGAGGCGGA  416

Query  420  GAGGTTTAGGAGATCTTTAGCGGCGAATCTAGTTAAACCGTCGTCTCTTCATAGCCATCA  479
            ||||||||||||||||||||| |||||| | | |||||||||||||||||||||||||| 
Sbjct  417  GAGGTTTAGGAGATCTTTAGCAGCGAATTTGGCTAAACCGTCGTCTCTTCATAGCCATCG  476

Query  480  CCGTTCTGAGTTCCGGCCACGGCTTAGCCGCTTTCATAAAGATCAAGATTAA  531
            |||| |||||||||||||||| ||||||||||| ||| ||||||||||||||
Sbjct  477  CCGTCCTGAGTTCCGGCCACGACTTAGCCGCTTCCATGAAGATCAAGATTAA  528



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26573863763


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5