BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg941600

Length=447
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G20500.1 | Symbols:  | Glutaredoxin family protein | chr5:69...   628    1e-179


> AT5G20500.1 | Symbols:  | Glutaredoxin family protein | chr5:6938598-6939848 
FORWARD LENGTH=645
Length=645

 Score =  628 bits (340),  Expect = 1e-179
 Identities = 422/459 (92%), Gaps = 15/459 (3%)
 Strand=Plus/Plus

Query  1    agaagaagaagaagaagaaagGAGCCATGACAATGCTTAGATCTATCTCGATGGTAATGT  60
            ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| 
Sbjct  29   AGAAGAAGAAGAAGAAGAAAGGAGCCATGACAATGTTTAGATCTATCTCCATGGTAATGC  88

Query  61   TGCTCGT----C-----ACATTCATTTCTATGGTTTCTTCTTCTGCTTCTTCCCCAGAAG  111
            |||||||    |     |||||||||||||||||||||||| ||||||| ||||||||||
Sbjct  89   TGCTCGTCGCACTAGTTACATTCATTTCTATGGTTTCTTCTGCTGCTTCGTCCCCAGAAG  148

Query  112  CCGACTTTGTTAAGAAGACCATCTCTTCCCACAAGATCGTCATCTTCTCCAAATCCTACT  171
            ||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||
Sbjct  149  CCGACTTTGTTAAGAAGACTATCTCTTCCCATAAGATCGTCATTTTCTCCAAATCCTACT  208

Query  172  GCCCCTATTGCAGGAAAGCTAAATCCGTTTTCAGAGAGCTAGATCAAGTTCCTTATGTTG  231
            ||||||| |||| |||||||||||| || ||||||||||| |||||||||||||||||||
Sbjct  209  GCCCCTACTGCAAGAAAGCTAAATCAGTGTTCAGAGAGCTGGATCAAGTTCCTTATGTTG  268

Query  232  TCGAGCTTGATGAAAGAGAAGATGGGTGGAGCATCCAGACTGCACTTGGAGAGATTGTTG  291
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  269  TCGAGCTTGATGAAAGAGAAGATGGTTGGAGCATCCAGACTGCACTTGGAGAGATTGTTG  328

Query  292  GGAGGCGAACAGTACCGCAAGTCTTCATTGACGGAAAACA-CATTGGAGGATCAGACGAT  350
            | ||||||||||||||||||||||||||| |||||||||| | | ||||||||||| |||
Sbjct  329  GAAGGCGAACAGTACCGCAAGTCTTCATTAACGGAAAACATC-TCGGAGGATCAGATGAT  387

Query  351  ACCGTAGATGCGAACGAGAGCGGTGAACTGGCCAAGCTTCTTGGTGTTTCCGGAAACAAA  410
            |||||||||||| | |||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct  388  ACCGTAGATGCGTATGAGAGCGGTGAACTCGCCAAGCTTCTTGGTGTTTCCGGGAACAAA  447

Query  411  -AATGCTGAACTCTAGGTTGA-ATATAGTTGGAAGAATT  447
             || ||||||||||||||| | |||||||||||||||||
Sbjct  448  GAA-GCTGAACTCTAGGTT-ATATATAGTTGGAAGAATT  484



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21263257827


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5