BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941601
Length=825
Score E
Sequences producing significant alignments: (Bits) Value
AT5G20510.1 | Symbols: AL5 | alfin-like 5 | chr5:6939813-694290... 1284 0.0
AT3G42790.1 | Symbols: AL3 | alfin-like 3 | chr3:14877958-14879... 512 2e-144
> AT5G20510.1 | Symbols: AL5 | alfin-like 5 | chr5:6939813-6942908
REVERSE LENGTH=1023
Length=1023
Score = 1284 bits (695), Expect = 0.0
Identities = 778/818 (95%), Gaps = 6/818 (1%)
Strand=Plus/Plus
Query 11 GAGAGACGGACATGGAAGGAGGAGCGT-CGCACTACAACCCTCGAACTGTCGAAGAAGTC 69
||||||||||||||||||||||| | | ||||||||| ||||||||||||||||||||||
Sbjct 52 GAGAGACGGACATGGAAGGAGGAAC-TGCGCACTACAGCCCTCGAACTGTCGAAGAAGTC 110
Query 70 TTCCGAGATTTCAAGGGCCGTCGAGATGGCATCATCCAAGCTCTCACCACTGATGTGGAA 129
|| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 111 TTTCGAGATTTTAAGGGCCGTCGAGCTGGCATCATCCAAGCTCTCACCACTGATGTGGAA 170
Query 130 GATTTTTTAAAGCAATGCGACCCTGAGAAGGAGAATCTTTGCTTGTATGGATTCCCAAAT 189
|||||||| |||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 171 GATTTTTTCCAGCAATGCGACCCTGAGAAGCAGAATCTCTGCTTGTATGGATTCCCAAAT 230
Query 190 GAAGTGTGGGAAGTTAACTTACCAGCTGAAGAAGTGCCTCCTGAGCTTCCCGAACCTGCA 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 231 GAAGTGTGGGAAGTTAACTTACCAGCTGAAGAAGTGCCTCCTGAGCTTCCCGAACCTGCA 290
Query 250 CTCGGCATTAACTTTGCCAGAGATGGGATGCAGGAAA-AAGACTGGCTTTCTCTCGTTGC 308
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 291 CTCGGCATTAACTTTGCCAGAGATGGGATGCAGGAAAGAA-ACTGGCTTTCTCTCGTTGC 349
Query 309 TGTCCACAGTGATGCGTGGTTACTTTCTGTGTCCTTTTACTTTGGTTCAAGAATTGGTTT 368
||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 350 TGTCCACAGTGATGCGTGGTTACTTTCTGTGTCTTTTTACTTTGGTTCAAGATTTGGTTT 409
Query 369 TGATAGAGCTGACAGGAAGCGCTTGTTCAACATGATAAATGAGGTTCCTACTGTATTTGA 428
|||||||||||||||||||||||||| | ||||||||||||||||||||||||| |||
Sbjct 410 CGATAGAGCTGACAGGAAGCGCTTGTTTAGTATGATAAATGAGGTTCCTACTGTATATGA 469
Query 429 AGTTGTAACTGGAAATG-AGAAGAAACAAACAAAGGAAAAGCCCTCTTCAGCAAATCAAA 487
||||||||||||||||| ||| ||| ||||||||||||| ||||||||||||||||||||
Sbjct 470 AGTTGTAACTGGAAATGCAGA-GAAGCAAACAAAGGAAATGCCCTCTTCAGCAAATCAAA 528
Query 488 ATGGCAACAGATCCAAGTCAAATTCAAAAGTGAGAGGTTTAGAAGGTAACAGTTCAAAGA 547
||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||
Sbjct 529 ATGGCAACAGATCCAAGTCAAATTCAAAAATGAGAGGTTTAGAAAGTAAAAGTTCAAAGA 588
Query 548 CGATACAGGCTaaggacgaggaagaaggattagagatagaggaaggggaagaggaagagg 607
||||||| || ||||| |||||||||||||||||| |||| |||||||||||||||||||
Sbjct 589 CGATACATGCCAAGGATGAGGAAGAAGGATTAGAGTTAGAAGAAGGGGAAGAGGAAGAGG 648
Query 608 aagaggatgaagatgaaCACGGTGAAACCCTATGTGGAGCTTGTGGAGATAACTATGCTT 667
| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 649 ATGAGGATGAAGACGAACACGGTGAAACCCTATGTGGAGCATGTGGAGATAACTATGCTT 708
Query 668 CTGATGAATTCTGGATTTGCTGTGACATGTGCGAGAAATGGTTCCACGGGAAGTGTGTGA 727
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 709 CTGATGAATTCTGGATTTGCTGTGACATGTGCGAGAAATGGTTCCACGGGGAGTGTGTGA 768
Query 728 AGATCACTCCAGCTAGAGCTGAGCATATCAAGCATTATAAGTGCCCTTCTTGCAGCAACA 787
||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||
Sbjct 769 AGATCACTCCAGCTAGAGCGGAGCATATCAAGCATTACAAGTGCCCTACTTGCAGCAACA 828
Query 788 AAAGAGCACGACCCTAGATGTTTTATTTCCACTAGTCT 825
|||||||||||||||||||||||||||||||||| |||
Sbjct 829 AAAGAGCACGACCCTAGATGTTTTATTTCCACTAATCT 866
> AT3G42790.1 | Symbols: AL3 | alfin-like 3 | chr3:14877958-14879781
REVERSE LENGTH=1086
Length=1086
Score = 512 bits (277), Expect = 2e-144
Identities = 625/787 (79%), Gaps = 48/787 (6%)
Strand=Plus/Plus
Query 21 CATGGAAGGAGGAGCGT-CGCACTACAACCCTCGAACTGTCGAAGAAGTCTTCCGA-GAT 78
||||||||| ||||| | | | |||||| |||||||||||||||||||| || | | |||
Sbjct 163 CATGGAAGGTGGAGC-TGCTCTCTACAATCCTCGAACTGTCGAAGAAGT-TTTCAAGGAT 220
Query 79 TTCAAGGGCCGTCGAGA-TGGCATCATCCAAGCTCTCACCACTGATGTGGAAGATTTTTT 137
||||| || ||||| | || ||| || ||||||||||||| ||||| |||| ||||
Sbjct 221 TTCAAAGGTCGTCG-TACTGCCATTGTCAAAGCTCTCACCACCGATGTTCAAGA-GTTTT 278
Query 138 A--AAGCAATGCGACCCTGAGAAGGAGAATCTTTGCTTGTATGGATTCCCAAATGAAGTG 195
| || ||||| |||||||||||||||||||||||||||||||| || || |||||||
Sbjct 279 ACCAA-CAATGTGACCCTGAGAAGGAGAATCTTTGCTTGTATGGGTTACCGAATGAAGAA 337
Query 196 TGGGAAGTTAACTTACCAGCTGAAGAAGTGCCTCCTGAGCTTCCC-GAACCTGCACTCGG 254
|||||||| || ||||||||||||||||||||||||||| || || || || || || ||
Sbjct 338 TGGGAAGTGAATTTACCAGCTGAAGAAGTGCCTCCTGAG-TTACCAGAGCCAGCTCTTGG 396
Query 255 CATTAACTTTGCCAGAGATGGGATG-CAGGAAAAAGACTGGCTTTCTCTCGTTGCTGTCC 313
||||||||||| || |||||| | | | |||| || |||||||| || |||||| | |
Sbjct 397 TATTAACTTTGCTAGGGATGGGCTCTCTG-AAAAGGAATGGCTTTCGCTTGTTGCTATTC 455
Query 314 ACAGTGATGCGTGGTTACTTTCTGTGTCCTTTTACTTTGGTTCAAGAATTGGTTTTGATA 373
||||||| || |||||||| ||||| || ||||||||||| ||||| || ||| | |
Sbjct 456 ACAGTGACGCTTGGTTACTGTCTGTCTCGTTTTACTTTGGCTCAAGGTTTTCTTTCCACA 515
Query 374 GAGCT-GACAGGAAGCGCTTGTTCAACATGATAAATGAGGTTCCTACTGTATTTGAAGTT 432
|| || |||||||| |||||||||||||| ||||| ||||||||| ||||||||||
Sbjct 516 -AGGAAGAGAGGAAGCGTTTGTTCAACATGATCAATGATGTTCCTACTATATTTGAAGTA 574
Query 433 GTAACTGGAAATGAGAAGAAACAAACAAAGGAAAAGCCCTCTTCAGCAAATCAAAATGGC 492
|| ||||||| || | ||| ||||||| ||| | ||| | ||||||||||| ||
Sbjct 575 GTGACTGGAA-TG-GCT-AAAG---CAAAGGACAAGTCATCTGCTGCAAATCAAAACGGA 628
Query 493 AACAGATCCAAGTCAAATTCAAAAGTGAGAGGTTTAGAAGGTAACAGTTCAAAGACGATA 552
|||| ||||||||| || || ||||| ||| || ||| || || || |||||||| | |
Sbjct 629 AACAAATCCAAGTCTAACTCTAAAGTTAGAACTTCAGAGGGAAAAAGCTCAAAGACCA-A 687
Query 553 CAGGCTaaggacgaggaagaaggattagagatagaggaaggggaagaggaagaggaagag 612
| | | | | | |||| ||| | || || | | || | | || |||||
Sbjct 688 --G-C-A-GC-CAA--AAGA-GGA---G-GAC-GA--A-G---AA-AT-A-GATGAAGAT 724
Query 613 gatgaagatgaaCACGGTGAAACCCTATGTGGAGCTTGTGGAGATAACT-ATGCTTCTGA 671
||||| ||||| ||||| |||||||| |||||||| |||||||| | | ||| | ||||
Sbjct 725 GATGAGGATGACCACGGGGAAACCCTTTGTGGAGCCTGTGGAGACAG-TGATGGTGCTGA 783
Query 672 TGAATTCTGGATTTGCTGTGACATGTGCGAGAAATGGTTCCACGGGAAGTGTGTGAAGAT 731
|||||||||||| ||||||||| | || ||||| |||||||| || ||||||||||||||
Sbjct 784 TGAATTCTGGATCTGCTGTGACCTTTGTGAGAAGTGGTTCCATGGCAAGTGTGTGAAGAT 843
Query 732 CACTCCAGCTAGAGCTGAGCATATCAAGCATTATAAGTGCCCTTCTTGCAGCAACAAAAG 791
||||||||||||||||||||||||||| || || ||||||||||| ||||||||||||||
Sbjct 844 CACTCCAGCTAGAGCTGAGCATATCAAACAATACAAGTGCCCTTCATGCAGCAACAAAAG 903
Query 792 AGCACGA 798
||| |||
Sbjct 904 AGCTCGA 910
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40187317600
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5