BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941602
Length=969
Score E
Sequences producing significant alignments: (Bits) Value
AT5G20520.1 | Symbols: WAV2 | alpha/beta-Hydrolases superfamily... 1580 0.0
> AT5G20520.1 | Symbols: WAV2 | alpha/beta-Hydrolases superfamily
protein | chr5:6943154-6946454 REVERSE LENGTH=1448
Length=1448
Score = 1580 bits (855), Expect = 0.0
Identities = 933/971 (96%), Gaps = 4/971 (0%)
Strand=Plus/Plus
Query 1 CTTTAGCAGAAACAGAGGAAATGGTGACCTATGTGAGCGCGTTGTTCTACGGAGTAGGAG 60
||||||||||| |||||||||||||||| || ||||||||||||||||||||| | ||||
Sbjct 120 CTTTAGCAGAACCAGAGGAAATGGTGACGTACGTGAGCGCGTTGTTCTACGGATTCGGAG 179
Query 61 GTATAGTCGTCGCCGGAGTTGCGCTGCTCGTGGCTTTCCAGGAGAAGCTTGTCTACGTAC 120
| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
Sbjct 180 GGATAGTCGTCGCCGGAGTGGCGCTGCTCGTGGCTTTCCAGGAGAAGCTTGTGTACGTCC 239
Query 121 CAGTGCTTCCCGGTTTAAGCAAGTCTTATCCGATCACTCCCGCTAGGCTCAATCTCATCT 180
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 CAGTGCTTCCGGGTTTAAGCAAGTCTTATCCGATCACTCCCGCTAGGCTCAATCTCATCT 299
Query 181 ACGAAGACGTTTGGCTTCAATCATCCGATGGTGTTCGCCTCCACGCTTGGTTCATCAAGA 240
||||||| ||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 300 ACGAAGATATTTGGCTTCAATCATCCGATGGTGTACGTCTCCACGCTTGGTTCATCAAGA 359
Query 241 TGTTCCCCGAATGTCGAGGTCCAACCATTTTATTTTTCCAGGAGAATGCCGGAAACATTG 300
||||||| |||||||||||||||||||||||||||||||||||||| || |||||||| |
Sbjct 360 TGTTCCCTGAATGTCGAGGTCCAACCATTTTATTTTTCCAGGAGAACGCTGGAAACATCG 419
Query 301 CTCATCGTCTGGAGATGGTTCGCATCATGATTCAAAAATTGAAGTGCAATGTATTCATGC 360
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 420 CTCATCGTCTGGAGATGGTTCGCATCATGATACAAAAATTGAAGTGCAATGTATTCATGC 479
Query 361 TTTCATATCGCGGCTACGGGGCAAGTGATGGTTATCCTTCACAGCAAGGAATCATAAGAG 420
|||||||||||||||| ||||||||||| || ||||||||||| ||||| ||||||| ||
Sbjct 480 TTTCATATCGCGGCTATGGGGCAAGTGAAGGCTATCCTTCACAACAAGGTATCATAAAAG 539
Query 421 ATGCTCAGGCTGCATTGGATCACCTTTCTGGAAGGACTGACATTGATACATCTAGAATAG 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 ATGCTCAGGCTGCATTGGATCACCTTTCTGGAAGGACTGACATTGATACATCTAGAATAG 599
Query 481 TTGTGTTTGGAAGGTCCCTTGGGGGAGCTGTTGGAGCTGTGCTTACCAAAAACAATCCAG 540
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TTGTATTTGGAAGGTCCCTTGGGGGAGCTGTTGGAGCTGTGCTTACCAAAAACAATCCAG 659
Query 541 ATAAGGTATCTGCATTGATTCTAGAAAATACTTTCACATCCATTCTTGATATGGCTGGCG 600
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 660 ATAAGGTATCTGCATTGATTCTGGAAAATACTTTCACATCCATTCTTGATATGGCTGGCG 719
Query 601 TTTTGCTGCCGTTCTTGAAGTGGTTTATTGGAGGAAGTGGTACGAAAAGCCTGAAGCTTC 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 TTTTGCTGCCGTTCTTGAAGTGGTTTATTGGAGGAAGTGGTACGAAAAGCCTGAAGCTTC 779
Query 661 TTAATTTTGTTGTACGTTCCCCCTGGAAAACAATTGATGCTATTGCTGAGGTCAAACAAC 720
||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 780 TTAATTTTGTTGTACGTTCTCCCTGGAAAACAATTGATGCTATTGCTGAGATCAAACAAC 839
Query 721 CGGTGCTTTTCCTCTCTGGACTGCAAGATGAGATGGTCCCTCCATTTCACATGAAAATGC 780
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 CAGTGCTTTTCCTCTCTGGACTGCAAGATGAGATGGTCCCTCCATTTCACATGAAAATGC 899
Query 781 TGTATGCGAAAGCGGCTGCCCGTAACCCTCAGTGCACATTTGTGGAGTTTCCAAGTGGGA 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 TGTATGCGAAAGCGGCTGCCCGTAACCCTCAGTGCACATTTGTGGAGTTTCCAAGTGGGA 959
Query 841 TGCATATGGATACATGGCTGTCTGGTGGTGAAGTTTACTGGAAAACAAACATGCAGTTTC 900
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 960 TGCATATGGATACATGGCTGTCTGGTGGTGAAGTTTACTGGAAAACAAACTTGCAATTTC 1019
Query 901 TTGAAAAGTATGCGCCTGAGAAAAGGAAAGACA-ATACAGGAAGGTAACGAGTGA-CGAT 958
| ||||||||||||||||||||||||||||| | ||||||||||||||||| | | ||||
Sbjct 1020 TCGAAAAGTATGCGCCTGAGAAAAGGAAAGA-AGATACAGGAAGGTAACGA-TCAACGAT 1077
Query 959 GCTGTGTTTAG 969
|||||||||||
Sbjct 1078 GCTGTGTTTAG 1088
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47421034768
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5