BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941608
Length=1107
Score E
Sequences producing significant alignments: (Bits) Value
AT5G20390.1 | Symbols: | Glycosyl hydrolase superfamily protei... 725 0.0
AT1G33220.1 | Symbols: | Glycosyl hydrolase superfamily protei... 370 2e-101
> AT5G20390.1 | Symbols: | Glycosyl hydrolase superfamily protein
| chr5:6892831-6894195 REVERSE LENGTH=1270
Length=1270
Score = 725 bits (392), Expect = 0.0
Identities = 539/611 (88%), Gaps = 6/611 (1%)
Strand=Plus/Plus
Query 495 TCAAGTCGAGGAATCTCCCGATCCTGATCAGCACCACCGTGGCTATGACCAATCTTGGCC 554
|||||||||||| |||||||||| ||||||||||||| |||||||||||||| |||||||
Sbjct 527 TCAAGTCGAGGAGTCTCCCGATCTTGATCAGCACCACGGTGGCTATGACCAACCTTGGCC 586
Query 555 AATCGTATCCACCTTCGGCCGGAGATTTTACGCCTCAAGCACGTGAACAACTAACTCCAG 614
| || ||||||||||||||||||||||| | ||||||||||||||||||||| || || |
Sbjct 587 AGTCATATCCACCTTCGGCCGGAGATTTCATGCCTCAAGCACGTGAACAACTTACCCCGG 646
Query 615 TGCTGAAGTTTTTATCTCAAACAAGTACACCTATTCTCGTCAACATCTACCCTTACTTCG 674
||||||||||||| |||||||||| ||| ||||| ||||||||||||||||| |||||||
Sbjct 647 TGCTGAAGTTTTTGTCTCAAACAAATACGCCTATCCTCGTCAACATCTACCCCTACTTCG 706
Query 675 CTTATGCTGCTGATTCTGTCAACATTCATCTTGATTACGCAACCTTCAACACCGACGCGG 734
| |||||||||||| || |||||||||| || || || || | |||||||||| || ||
Sbjct 707 CATATGCTGCTGATCCTATCAACATTCAGCTCGACTATGCCATCTTCAACACCAACAAGG 766
Query 735 TCGTGGTTCAAGACGGGCCACTAAGTTATTCAAACATGTTCGATGTAATATTTGATGCGT 794
||||||| |||||||||||||| ||||| |||||||||||||||| |||||||||||||
Sbjct 767 TCGTGGTCCAAGACGGGCCACTTGGTTATACAAACATGTTCGATGTGATATTTGATGCGT 826
Query 795 TCGTATGGGCAATGGAGAAAGAAGGCGTGAAAGATTTACCCATGGTGGTAACAGAGACCG 854
||||||||||||||||||||||||| ||||| |||||||| |||||||||||||| || |
Sbjct 827 TCGTATGGGCAATGGAGAAAGAAGGTGTGAAGGATTTACCAATGGTGGTAACAGAAACTG 886
Query 855 GATGGCCGTCTGCCGGTAACGGGAACTTAACAACGCCAGATATCGCGTCTATATACAACG 914
||||||| ||||| |||||||| |||||||| || ||||||||||| |||||||||||
Sbjct 887 GATGGCCATCTGCTGGTAACGGAAACTTAACGACTCCAGATATCGCATCTATATACAATA 946
Query 915 GAAATTTTGTCAAACATGTGGAAAGCGGTAAAGGGACACCGAAGAGGCCAAACAATAGCA 974
|||||||| |||||||||||||||||||||||||| || ||||| ||||| | | |||
Sbjct 947 CCAATTTTGTTAAACATGTGGAAAGCGGTAAAGGGACGCCAAAGAGACCAAAGAGTGGCA 1006
Query 975 TTCA-TGGATTTTTATTTGCTACGTTCAATGAAAATCAAAAGCCAGCTGGAACCGAACAA 1033
|| | ||||||| ||||||| ||||||||||| |||||||||||||| ||||||||||||
Sbjct 1007 TT-AGTGGATTTCTATTTGCGACGTTCAATGAGAATCAAAAGCCAGCGGGAACCGAACAA 1065
Query 1034 AATTTTGGATTGTACTA-TCCTACTGATATGAAACCAATCTACAA-ATTGTTTTAATTTT 1091
|||||||| || || || ||| || |||||||| || |||||||| || ||||| |||||
Sbjct 1066 AATTTTGGGTTATA-TAATCCAACAGATATGAAGCCCATCTACAAGAT-GTTTTGATTTT 1123
Query 1092 TAGATTCTTGA 1102
|||||||||||
Sbjct 1124 TAGATTCTTGA 1134
Score = 634 bits (343), Expect = 0.0
Identities = 433/477 (91%), Gaps = 4/477 (1%)
Strand=Plus/Plus
Query 23 ATTATGGATTATCCTAAAAATTCGTTGTTGTT-AATGCTCTTGTGCACGGCATTTTTGTC 81
|||||||||| || || ||| |||| ||||| || | | |||||| ||||||| |||
Sbjct 82 ATTATGGATTGTCATAGAAAGACGTTCTTGTTGAA-GTTTTTGTGCGTGGCATTTCTGTT 140
Query 82 AAACTACAACAGTGGTGGCTTTGTAGATGCAGCAACAAACATTGGCTTGAACTACGGCCT 141
|||||||| || || |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 141 AAACTACAGCAATGTTGGCTTTGTAGACGCAGCAACAAACATTGGCTTGAACTACGGCCT 200
Query 142 CCTCGGAGACAACCTTCCACCTCCATCTGAAGTTATCAACCTCTACAAGTCTTTAAGTAT 201
||| ||||||||||| || |||||||||||||||||||||||||||||||| |||||| |
Sbjct 201 CCTTGGAGACAACCTCCCGCCTCCATCTGAAGTTATCAACCTCTACAAGTCCTTAAGTGT 260
Query 202 TACCAATATTCGGATCTTCGACACGAA-TACGGATGTCCTTAACGCCTTTCGAGGGAACC 260
|||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |
Sbjct 261 TACCAATATTCGGATCTTCGACAC-AACTACGGATGTCCTTAACGCCTTTCGAGGGAATC 319
Query 261 GCGATATTGGACTTATGGTAGGCGTTAAGAACCAAGACTTAGAGGCTCTTTCGGTCAGCG 320
|| |||| ||| ||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 320 GCAATATCGGAGTTATGGTAGACGTGAAGAACCAAGACTTAGAGGCTCTTTCGGTCAGCG 379
Query 321 AAGAAGCTGTTAACACATGGATCGTGACCAACATTGAGCCTTACTTAGCTGATGTCAACA 380
|||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 380 AAGAAGCTGTTAACACCTGGTTCGTGACCAACATTGAGCCTTACTTAGCTGATGTCAACA 439
Query 381 TCACGTTCATTACTGTTGGGAATGAAATCATCCCTGGAAAAATCGGCTCTTATGTGCTCC 440
||||||||||| |||| ||||| ||| ||||||| || ||||||||||||||||||| |
Sbjct 440 TCACGTTCATTGCTGTCGGGAACGAAGTCATCCCAGGGGAAATCGGCTCTTATGTGCTAC 499
Query 441 CCGTCATGAAGTCTCTCACCAACATTGTCAAGTCGAGGAATCTCCCGATCCTGATCA 497
|||||||||| |||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 500 CCGTCATGAAATCTCTCACCAACATTGTCAAGTCGAGGAGTCTCCCGATCTTGATCA 556
> AT1G33220.1 | Symbols: | Glycosyl hydrolase superfamily protein
| chr1:12044872-12045879 FORWARD LENGTH=1008
Length=1008
Score = 370 bits (200), Expect = 2e-101
Identities = 430/540 (80%), Gaps = 20/540 (4%)
Strand=Plus/Plus
Query 488 ATCCT-GATCAAGTCGAGGAATC-TCCCGATCCT-GATCAGCACCACCGTGGCTATGACC 544
||||| | ||||||||| ||| | |||| || || ||| |||||| ||||||||| |
Sbjct 439 ATCCTCG-TCAAGTCGATGAACCTTCCC-AT-CTCGATAAGCACCGTGGTGGCTATGTCG 495
Query 545 AATCTTG-GCCAATCGTATCCACCTTCGGCCGGAGATTTTACGCCTCAAGCACGTGAACA 603
||||||| | ||||| || |||||||| || ||||| || ||| ||||||| || |||||
Sbjct 496 AATCTTGAG-CAATCATACCCACCTTCTGCTGGAGAGTTCACGTCTCAAGCGCGAGAACA 554
Query 604 AC-TAACTCCAGTGCTGAAGTTTTTATCTCAAACAAGTACACCTATTCTCGTCAACATCT 662
|| | | || |||||||| | || |||||||||||||| |||||||||||||| || |
Sbjct 555 ACTTGTC-CCCGTGCTGAAACTATTGTCTCAAACAAGTACGCCTATTCTCGTCAATATTT 613
Query 663 ACCCTTAC-TTCGCTTATGC-TGCTGATTCTGTC-AACATTCATCTTGATTACGCAACCT 719
|||||||| ||| |||| || | | || | | ||||| | ||| || || || ||||
Sbjct 614 ACCCTTACTTTC-CTTACGCAT-CCGA-CCCAACGAACATCCCTCTAGACTATGCTACCT 670
Query 720 TCAACACCGACGCGGTCGTGGTTCAAGACGGGCCACTAAGTTATTCAAACATGTTCGATG 779
||||||| | || ||| || ||||| || ||| | | |||||||||||||| ||||
Sbjct 671 TCAACACTAAGGCCACCGTCGTCCAAGATGGACCATTGGGCTATTCAAACATGTTTGATG 730
Query 780 TAATATTTGATGCGTTCGTATGGGCAATGGAGAAAGAAGGCGTGAAAGATTTACCCATGG 839
||| ||||| || ||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 731 CAATCTTTGACGCATTCGTGTGGGCAATGGAGAAGGAAGGCGTGAAAGATTTACCCATGG 790
Query 840 TGGTAACAGAGACCGGATGGCCGTCTGCCGGTAACGGGAACTTAACAACGCCAGATATCG 899
|||| | |||||||||||||| |||||||| || ||||||||||| || || |||||||
Sbjct 791 TGGTGTCCGAGACCGGATGGCCATCTGCCGGAAATGGGAACTTAACCACACCGGATATCG 850
Query 900 CGTCTA-TATACAACGGAAATTTTGTCAAACATGTGGAAAGCGGTAAAGGGA-CACCGAA 957
|| || | |||||| ||||||| || |||||| | | |||||| || |||| | || ||
Sbjct 851 CGGGTACT-TACAACAGAAATTTCGTGAAACATATAGTAAGCGGGAA-GGGAACGCCTAA 908
Query 958 GAGGCCAAACAATAGCATTCATGGATTTTTATTTGCTACGTTCAATGAAAATCAAAAGCC 1017
| | || |||||| | || |||| ||||||||||| |||||||| ||||||||||||||
Sbjct 909 GCGACCCAACAATGGAATGGATGGGTTTTTATTTGCAACGTTCAACGAAAATCAAAAGCC 968
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54266789145
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5