BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg941614 Length=1649 Score E Sequences producing significant alignments: (Bits) Value AT5G20600.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 2477 0.0 > AT5G20600.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: rRNA processing; LOCATED IN: preribosome, small subunit precursor; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleolar, Nop52 (InterPro:IPR010301); Has 543 Blast hits to 530 proteins in 201 species: Archae - 0; Bacteria - 10; Metazoa - 211; Fungi - 164; Plants - 46; Viruses - 0; Other Eukaryotes - 112 (source: NCBI BLink). | chr5:6966178-6968033 REVERSE LENGTH=1856 Length=1856 Score = 2477 bits (1341), Expect = 0.0 Identities = 1552/1653 (94%), Gaps = 17/1653 (1%) Strand=Plus/Plus Query 1 TCCTCAAAAATTCGATAACAATGGTGAAACGGAATCGAGTTTCGCCGGCAGAACAAGCAT 60 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 71 TCCTCAAAAATTCGATAACAATGGTGAAACGGAATCGAGTTCCGCCGGCAGAACAAGCAT 130 Query 61 TACCCATTGAAGAAGATTGCAAATCGTTGATAAAGAAGCTTGCTTCGTGCAAGCAATCAA 120 ||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||| Sbjct 131 TACCCATCGAAGAAGATTGCAAATCGTTGATAAAAAAGCTTGCTTCGTGTAAGCAATCAA 190 Query 121 TCCGCGACAGATCCTTGCGAACTGTTCTTCGTACTTGGCTCCCAGAACAAACTGAAATCT 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 191 TCCGCGACAGATCCTTGCGAACTGTTCTTCGTACTTGGCTCCCAGAACAAACTGAAATCT 250 Query 181 CCGATGAAGATATGAAGAAGCTATGGCAAGGAATCTTCTATTGCATCTGGCACGCCGATA 240 ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| Sbjct 251 CCGATGAAGATATGAAGAAGCTATGGCAAGGAATCTTCTATTGTGTCTGGCACGCTGATA 310 Query 241 AGTCTCTTTACCAATCAGAACTCATTGATCGTCTCTCTTCTGCTATTCAATCACTTCCTC 300 |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| Sbjct 311 AGTCTCTTTACCAATCAGAACTTATTGATCGTCTCTCTTCTGCTCTTCAATCACTTCCTC 370 Query 301 TTTCTTTGTCTCTCCATTACTTCACTGTCTTCTTGTTCACCATGCGTCGTGAGTGGTCTC 360 || |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 371 TTCCTTTGTCTATCCATTACTTCACCGTCTTCTTGTTCACCATGCGTCGTGAGTGGTCTC 430 Query 361 GTATTGATCGGCTCAGGTTAGATAAGTTTTACCTCTTGATTCGAAGGTTTTTGCACGGTT 420 |||||||||||||||||||||||||||| ||||| |||||||| ||||| |||||||||| Sbjct 431 GTATTGATCGGCTCAGGTTAGATAAGTTCTACCTATTGATTCGTAGGTTCTTGCACGGTT 490 Query 421 TCTTCTCTCTTCTTGATAGTAATTCGTGGGATTTGGAATTCACTCGTCGTTTGATGGGTG 480 ||||||| ||| ||||||| ||||| ||||||||||||||||||||||||||||||||| Sbjct 491 TCTTCTCACTTATTGATAGCAATTCATGGGATTTGGAATTCACTCGTCGTTTGATGGGTA 550 Query 481 TTTTGTTCGATGGGACTTTCCTTGCTGGTGATAAGTTTCAAGGGAATGGTGTTAACTATC 540 |||||||||| |||||||| ||||||| |||||||||||||||||||||||||||||||| Sbjct 551 TTTTGTTCGACGGGACTTTACTTGCTGATGATAAGTTTCAAGGGAATGGTGTTAACTATC 610 Query 541 ATATAGCTTCTGTTTTTGTTGAAGAGCTTAGGCCGTTTCTTCCTTTAAGGAAAGAGGTTT 600 ||||| |||||| |||||||||||||||||||||||||||||| |||||||| ||||||| Sbjct 611 ATATAACTTCTGCTTTTGTTGAAGAGCTTAGGCCGTTTCTTCCATTAAGGAAGGAGGTTT 670 Query 601 TGGAACTTCTTTTTGCTCCCTTTGTGACCATTTTGGGTGTTGTTACTGATAAGACTTTGG 660 ||||||||||||||||||| ||||||| ||| |||||||||||| |||||||| ||||| Sbjct 671 TGGAACTTCTTTTTGCTCCTTTTGTGAAGATTATGGGTGTTGTTAATGATAAGATTTTGG 730 Query 661 TGGGGAAGATTAAGAGTAATTTGTTTGAGGAGTTACTGAAGATGGGGAAGAAGCTGCTGA 720 |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| Sbjct 731 TGGGGAAGATTAAGAGTAATTTGTTTGATGAGTTACTGAAGATGGGGAAGAAGCTACTGA 790 Query 721 TAATTAAGAAAA-CTGGGAATGATGTAGTGCCTGAGGATGATGATGTAGTGGTTTTGGGT 779 ||||||| | || ||||| |||||| ||||||||||||||||||||| ||||||||||| Sbjct 791 TAATTAA-ACAATCTGGGGATGATGCAGTGCCTGAGGATGATGATGTTGTGGTTTTGGGA 849 Query 780 TCTATTGCTTTGTCTATGGAGTTTGCAAAGAGGTTCTATGAGATGGGTTCTTCTCCGGAT 839 ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| Sbjct 850 TCTATTGCTTTGTCTATGGAGTTTGCAAAGAGGTTTTATGAGTTGGGTTCTTCTCCGGAG 909 Query 840 TGTCATCAAGGTAATAGGAAATCGATATTTGCTCTTCACAAGGAGTTCTTGCAGTTGGAG 899 |||||||| ||||||||||||| |||||||||||||||||||||||| |||||||||||| Sbjct 910 TGTCATCAGGGTAATAGGAAATTGATATTTGCTCTTCACAAGGAGTTTTTGCAGTTGGAG 969 Query 900 AAGGATATGTCGACTTCTGGTATCGCAGTTTCTATCGCAGAAGCTTCTCGTCCTGGCAAT 959 ||||||||||||| |||| |||||| ||| ||||||| ||||||||||||||||||||| Sbjct 970 AAGGATATGTCGAGTTCTAGTATCGAAGTATCTATCGTAGAAGCTTCTCGTCCTGGCAAC 1029 Query 960 GATGAAGTGCCTGAA-CTGGTTCCTGTGTCTGAGTCTGAAT-CAAATACTGGTTCTAAGT 1017 |||||||| |||||| | ||||||||||||||||||| ||| ||||| || |||||||| Sbjct 1030 GATGAAGTTCCTGAATC-GGTTCCTGTGTCTGAGTCT-AATACAAATGTTGTTTCTAAGT 1087 Query 1018 CTAATAAGAAGATTGTTGCGAATGGGTCTTCTTCAAAGAAGAAGGGTTTGAAGAAATGTT 1077 |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1088 CTAA---GAAGATTGTTGCTAATGGGTCTTCTTCAAAGAAGAAGGGTTTGAAGAAATGTT 1144 Query 1078 CAAAGACTAAAAAAGGCAGTGTCAAGAA-GGATGCTGTTATGGATAATGTTATTGATCTT 1136 ||||||||||||||| |||||||||||| || |||||||||||||| |||| | |||||| Sbjct 1145 CAAAGACTAAAAAAGACAGTGTCAAGAAAGG-TGCTGTTATGGATAGTGTTGTCGATCTT 1203 Query 1137 GGTAACAAAGATGAAGCTTTTGATGAGACTATGATATCAGATCTTCGACAGGAGTTTGAG 1196 ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| Sbjct 1204 GGTAACAAAGATGAATCCTTTGATGAGACTATGATATCAGATCTTCGACAGGAGTTTGAG 1263 Query 1197 AAGGTTGCATCTGAAATGAGTCCGTCAAAAAGTGAGGTTGCAAGTGTCTGTGAAGTAGCA 1256 ||| |||| |||||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct 1264 AAGATTGCCTCTGAAATGAGTCCGTCAAAAAGTGAGGTTGCAAGTGTCTGTGACGTGGCA 1323 Query 1257 GAGCCTGTGTCAATATCCAAAAAGAGCAAGAAGAGGAAAAGAGAGAACAAAGGGGAAGGG 1316 ||||||||||| |||| ||||||| |||||||||||||||||||||||||||||||| | Sbjct 1324 GAGCCTGTGTCCGTATCTAAAAAGACCAAGAAGAGGAAAAGAGAGAACAAAGGGGAAGAG 1383 Query 1317 CAAGTTATTACTGTTAACAGAGATGTAGCAGAGACAAGCTTAGCTGGCCCGAGCAGTGAG 1376 ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1384 CAAGTTAGTACTGTTAACAGAGATGCAGCAGAGACAAGCTTAGCTGGCCCGAGCAGTGAG 1443 Query 1377 AAAAGCTCAAAGAGAGTAAGATTCGCAATGAAGAACAATTTGGTGTGGAAGCCTCATTGC 1436 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1444 AAGAGCTCAAAGAGAGTAAGATTCGCAATGAAGAACAATTTGGTGTGGAAGCCTCATTGC 1503 Query 1437 CCTCTACCTCCACAAGATTTGAGGTGTCCTCCGTCTGCTACGCCAAGAGGAAGTGCTCTG 1496 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1504 CCTCTACCTCCACAAGATTTGAGGTGTCCTCCGTCTGCTACACCAAGAGGAAGTGCTCTG 1563 Query 1497 AAGCAAGGAATCCCAGCCGGTCCAGTGAGGGAGTTGGCTTCCCAGAGTAGGAAGACGAAG 1556 |||||||||||||| ||||||||||||||||||||||| | ||||||||||||||| Sbjct 1564 AAGCAAGGAATCCCGGCCGGTCCAGTGAGGGAGTTGGC-----A-AGTAGGAAGACGAAG 1617 Query 1557 AAGAAAGTGAAACCTGCTGCACGTAGAGGAGTGAAGACGATCAAGAATTTGAAGAAGAAA 1616 |||||||||||||| ||||| ||||||||||||||| | ||||||||||||||||||||| Sbjct 1618 AAGAAAGTGAAACCCGCTGCTCGTAGAGGAGTGAAGTCTATCAAGAATTTGAAGAAGAAA 1677 Query 1617 TTGTCGCCATGAAAATGGAGTGTCGAGTCATTT 1649 |||||||||||||||||||||||| |||| ||| Sbjct 1678 TTGTCGCCATGAAAATGGAGTGTCAAGTCGTTT 1710 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 81475484535 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5