BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941614
Length=1649
Score E
Sequences producing significant alignments: (Bits) Value
AT5G20600.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 2477 0.0
> AT5G20600.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: rRNA processing; LOCATED IN: preribosome,
small subunit precursor; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Nucleolar, Nop52 (InterPro:IPR010301); Has 543 Blast hits
to 530 proteins in 201 species: Archae - 0; Bacteria - 10;
Metazoa - 211; Fungi - 164; Plants - 46; Viruses - 0; Other
Eukaryotes - 112 (source: NCBI BLink). | chr5:6966178-6968033
REVERSE LENGTH=1856
Length=1856
Score = 2477 bits (1341), Expect = 0.0
Identities = 1552/1653 (94%), Gaps = 17/1653 (1%)
Strand=Plus/Plus
Query 1 TCCTCAAAAATTCGATAACAATGGTGAAACGGAATCGAGTTTCGCCGGCAGAACAAGCAT 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 71 TCCTCAAAAATTCGATAACAATGGTGAAACGGAATCGAGTTCCGCCGGCAGAACAAGCAT 130
Query 61 TACCCATTGAAGAAGATTGCAAATCGTTGATAAAGAAGCTTGCTTCGTGCAAGCAATCAA 120
||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 131 TACCCATCGAAGAAGATTGCAAATCGTTGATAAAAAAGCTTGCTTCGTGTAAGCAATCAA 190
Query 121 TCCGCGACAGATCCTTGCGAACTGTTCTTCGTACTTGGCTCCCAGAACAAACTGAAATCT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 191 TCCGCGACAGATCCTTGCGAACTGTTCTTCGTACTTGGCTCCCAGAACAAACTGAAATCT 250
Query 181 CCGATGAAGATATGAAGAAGCTATGGCAAGGAATCTTCTATTGCATCTGGCACGCCGATA 240
||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 251 CCGATGAAGATATGAAGAAGCTATGGCAAGGAATCTTCTATTGTGTCTGGCACGCTGATA 310
Query 241 AGTCTCTTTACCAATCAGAACTCATTGATCGTCTCTCTTCTGCTATTCAATCACTTCCTC 300
|||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 311 AGTCTCTTTACCAATCAGAACTTATTGATCGTCTCTCTTCTGCTCTTCAATCACTTCCTC 370
Query 301 TTTCTTTGTCTCTCCATTACTTCACTGTCTTCTTGTTCACCATGCGTCGTGAGTGGTCTC 360
|| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 371 TTCCTTTGTCTATCCATTACTTCACCGTCTTCTTGTTCACCATGCGTCGTGAGTGGTCTC 430
Query 361 GTATTGATCGGCTCAGGTTAGATAAGTTTTACCTCTTGATTCGAAGGTTTTTGCACGGTT 420
|||||||||||||||||||||||||||| ||||| |||||||| ||||| ||||||||||
Sbjct 431 GTATTGATCGGCTCAGGTTAGATAAGTTCTACCTATTGATTCGTAGGTTCTTGCACGGTT 490
Query 421 TCTTCTCTCTTCTTGATAGTAATTCGTGGGATTTGGAATTCACTCGTCGTTTGATGGGTG 480
||||||| ||| ||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 491 TCTTCTCACTTATTGATAGCAATTCATGGGATTTGGAATTCACTCGTCGTTTGATGGGTA 550
Query 481 TTTTGTTCGATGGGACTTTCCTTGCTGGTGATAAGTTTCAAGGGAATGGTGTTAACTATC 540
|||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 551 TTTTGTTCGACGGGACTTTACTTGCTGATGATAAGTTTCAAGGGAATGGTGTTAACTATC 610
Query 541 ATATAGCTTCTGTTTTTGTTGAAGAGCTTAGGCCGTTTCTTCCTTTAAGGAAAGAGGTTT 600
||||| |||||| |||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 611 ATATAACTTCTGCTTTTGTTGAAGAGCTTAGGCCGTTTCTTCCATTAAGGAAGGAGGTTT 670
Query 601 TGGAACTTCTTTTTGCTCCCTTTGTGACCATTTTGGGTGTTGTTACTGATAAGACTTTGG 660
||||||||||||||||||| ||||||| ||| |||||||||||| |||||||| |||||
Sbjct 671 TGGAACTTCTTTTTGCTCCTTTTGTGAAGATTATGGGTGTTGTTAATGATAAGATTTTGG 730
Query 661 TGGGGAAGATTAAGAGTAATTTGTTTGAGGAGTTACTGAAGATGGGGAAGAAGCTGCTGA 720
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 731 TGGGGAAGATTAAGAGTAATTTGTTTGATGAGTTACTGAAGATGGGGAAGAAGCTACTGA 790
Query 721 TAATTAAGAAAA-CTGGGAATGATGTAGTGCCTGAGGATGATGATGTAGTGGTTTTGGGT 779
||||||| | || ||||| |||||| ||||||||||||||||||||| |||||||||||
Sbjct 791 TAATTAA-ACAATCTGGGGATGATGCAGTGCCTGAGGATGATGATGTTGTGGTTTTGGGA 849
Query 780 TCTATTGCTTTGTCTATGGAGTTTGCAAAGAGGTTCTATGAGATGGGTTCTTCTCCGGAT 839
||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 850 TCTATTGCTTTGTCTATGGAGTTTGCAAAGAGGTTTTATGAGTTGGGTTCTTCTCCGGAG 909
Query 840 TGTCATCAAGGTAATAGGAAATCGATATTTGCTCTTCACAAGGAGTTCTTGCAGTTGGAG 899
|||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 910 TGTCATCAGGGTAATAGGAAATTGATATTTGCTCTTCACAAGGAGTTTTTGCAGTTGGAG 969
Query 900 AAGGATATGTCGACTTCTGGTATCGCAGTTTCTATCGCAGAAGCTTCTCGTCCTGGCAAT 959
||||||||||||| |||| |||||| ||| ||||||| |||||||||||||||||||||
Sbjct 970 AAGGATATGTCGAGTTCTAGTATCGAAGTATCTATCGTAGAAGCTTCTCGTCCTGGCAAC 1029
Query 960 GATGAAGTGCCTGAA-CTGGTTCCTGTGTCTGAGTCTGAAT-CAAATACTGGTTCTAAGT 1017
|||||||| |||||| | ||||||||||||||||||| ||| ||||| || ||||||||
Sbjct 1030 GATGAAGTTCCTGAATC-GGTTCCTGTGTCTGAGTCT-AATACAAATGTTGTTTCTAAGT 1087
Query 1018 CTAATAAGAAGATTGTTGCGAATGGGTCTTCTTCAAAGAAGAAGGGTTTGAAGAAATGTT 1077
|||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1088 CTAA---GAAGATTGTTGCTAATGGGTCTTCTTCAAAGAAGAAGGGTTTGAAGAAATGTT 1144
Query 1078 CAAAGACTAAAAAAGGCAGTGTCAAGAA-GGATGCTGTTATGGATAATGTTATTGATCTT 1136
||||||||||||||| |||||||||||| || |||||||||||||| |||| | ||||||
Sbjct 1145 CAAAGACTAAAAAAGACAGTGTCAAGAAAGG-TGCTGTTATGGATAGTGTTGTCGATCTT 1203
Query 1137 GGTAACAAAGATGAAGCTTTTGATGAGACTATGATATCAGATCTTCGACAGGAGTTTGAG 1196
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1204 GGTAACAAAGATGAATCCTTTGATGAGACTATGATATCAGATCTTCGACAGGAGTTTGAG 1263
Query 1197 AAGGTTGCATCTGAAATGAGTCCGTCAAAAAGTGAGGTTGCAAGTGTCTGTGAAGTAGCA 1256
||| |||| |||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1264 AAGATTGCCTCTGAAATGAGTCCGTCAAAAAGTGAGGTTGCAAGTGTCTGTGACGTGGCA 1323
Query 1257 GAGCCTGTGTCAATATCCAAAAAGAGCAAGAAGAGGAAAAGAGAGAACAAAGGGGAAGGG 1316
||||||||||| |||| ||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1324 GAGCCTGTGTCCGTATCTAAAAAGACCAAGAAGAGGAAAAGAGAGAACAAAGGGGAAGAG 1383
Query 1317 CAAGTTATTACTGTTAACAGAGATGTAGCAGAGACAAGCTTAGCTGGCCCGAGCAGTGAG 1376
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1384 CAAGTTAGTACTGTTAACAGAGATGCAGCAGAGACAAGCTTAGCTGGCCCGAGCAGTGAG 1443
Query 1377 AAAAGCTCAAAGAGAGTAAGATTCGCAATGAAGAACAATTTGGTGTGGAAGCCTCATTGC 1436
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1444 AAGAGCTCAAAGAGAGTAAGATTCGCAATGAAGAACAATTTGGTGTGGAAGCCTCATTGC 1503
Query 1437 CCTCTACCTCCACAAGATTTGAGGTGTCCTCCGTCTGCTACGCCAAGAGGAAGTGCTCTG 1496
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1504 CCTCTACCTCCACAAGATTTGAGGTGTCCTCCGTCTGCTACACCAAGAGGAAGTGCTCTG 1563
Query 1497 AAGCAAGGAATCCCAGCCGGTCCAGTGAGGGAGTTGGCTTCCCAGAGTAGGAAGACGAAG 1556
|||||||||||||| ||||||||||||||||||||||| | |||||||||||||||
Sbjct 1564 AAGCAAGGAATCCCGGCCGGTCCAGTGAGGGAGTTGGC-----A-AGTAGGAAGACGAAG 1617
Query 1557 AAGAAAGTGAAACCTGCTGCACGTAGAGGAGTGAAGACGATCAAGAATTTGAAGAAGAAA 1616
|||||||||||||| ||||| ||||||||||||||| | |||||||||||||||||||||
Sbjct 1618 AAGAAAGTGAAACCCGCTGCTCGTAGAGGAGTGAAGTCTATCAAGAATTTGAAGAAGAAA 1677
Query 1617 TTGTCGCCATGAAAATGGAGTGTCGAGTCATTT 1649
|||||||||||||||||||||||| |||| |||
Sbjct 1678 TTGTCGCCATGAAAATGGAGTGTCAAGTCGTTT 1710
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81475484535
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5