BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941617
Length=676
Score E
Sequences producing significant alignments: (Bits) Value
AT5G20630.1 | Symbols: GLP3, GLP3A, GLP3B, ATGER3, GER3 | germi... 1029 0.0
> AT5G20630.1 | Symbols: GLP3, GLP3A, GLP3B, ATGER3, GER3 | germin
3 | chr5:6975104-6975993 REVERSE LENGTH=890
Length=890
Score = 1029 bits (557), Expect = 0.0
Identities = 635/674 (94%), Gaps = 0/674 (0%)
Strand=Plus/Plus
Query 1 ATAAAACATTTTAAAGAAAAATGAAGATGATAATCCATATTTTCTTCATCATCTCCCTCG 60
|||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 24 ATAAAACATTCTAAAGAAAAATGAAGATGATAATCCAAATTTTCTTCATCATCTCCCTCA 83
Query 61 TTTCATCCATCTCTTTTGCCTCTGTTCAAGACTTTTGTGTAGCTGATCCAAATGGTCCTC 120
||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 84 TTTCAACCATCTCTTTTGCCTCTGTTCAAGACTTTTGTGTAGCTGACCCAAAGGGTCCTC 143
Query 121 AAAGTCCATCAGGGTACTCTTGCAAGAACCCTGACCAGGTCACCGAAAATGACTTTGCAT 180
|||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 144 AAAGCCCATCAGGTTACTCTTGCAAGAACCCTGACCAAGTCACCGAAAATGACTTTGCAT 203
Query 181 TTTCCGGACTCGGCAAAGCTGGAAACACTTCGAACATCATTAAAGCCGCAGTGACTCCAG 240
|| |||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 204 TTACCGGCCTCGGCACAGCTGGAAACACTTCCAACATCATTAAAGCCGCAGTGACTCCAG 263
Query 241 CCTTTGCGCCTGCTTTTGCGGGCACCAATGGCCTTGGCGTCTCTCTGGCTCGTCTTGACT 300
||||||| ||||||| || |||| ||||||||||||||| |||||||||||||||||||
Sbjct 264 CCTTTGCTCCTGCTTACGCAGGCATCAATGGCCTTGGCGTATCTCTGGCTCGTCTTGACT 323
Query 301 TAGCCGGTGGTGGTGTCATCCCTCTTCACACTCATCCTGGTGCTTCTGAGGCCCTTGTAG 360
||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 324 TAGCCGGTGGTGGTGTCATCCCTCTCCACACTCATCCTGGTGCTTCTGAGGTCCTTGTAG 383
Query 361 TCATACAAGGCACCATTTGCGCCGGATTCATCTCCTCTGCTAACAAAGTCTACTTGAAGA 420
|||| ||||||||||||||||||||||| |||||||| || |||||||| ||||||||||
Sbjct 384 TCATTCAAGGCACCATTTGCGCCGGATTTATCTCCTCCGCCAACAAAGTTTACTTGAAGA 443
Query 421 CTCTCAACAGAGGCGATTCTATGGTGTTTCCTCAAGGGCTTCTTCATTTTCAGCTTAACT 480
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 444 CTCTCAACAGAGGAGATTCTATGGTGTTTCCTCAAGGACTTCTTCATTTTCAGCTAAACT 503
Query 481 CTGGGAAAGGCCCTGCCTTAGCCTTCGTCGCCTTCGGAAGCTCCTCCCCGGGGCTCCAGA 540
||||||||||||||||||| ||||| ||||| ||||||||||||||||| |||||||| |
Sbjct 504 CTGGGAAAGGCCCTGCCTTGGCCTTTGTCGCATTCGGAAGCTCCTCCCCAGGGCTCCAAA 563
Query 541 TTCTACCATTTGCTCTGTTTGCAAACGATTTGCCTTCAGAACTCGTTGAAGCCACGACGT 600
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 564 TTCTACCATTTGCTCTGTTTGCAAACGATTTGCCTTCAGAACTTGTTGAAGCCACAACGT 623
Query 601 TCCTTAGCGATGCAGAAGTTAAGAAGCTTAAGGGTGTGCTTGGAGGAACTAATTAAGCGT 660
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 624 TCCTTAGCGATGCAGAAGTTAAGAAGCTTAAGGGTGTGCTTGGGGGAACTAATTAAGCTT 683
Query 661 CTCTTAATTTCATT 674
|||||| |||||||
Sbjct 684 CTCTTAGTTTCATT 697
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32702429697
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5